HEADER TRANSFERASE 22-MAY-17 5VWR TITLE E.COLI ASPARTATE AMINOTRANSFERASE-(1R,3S,4S)-3-AMINO-4- TITLE 2 FLUOROCYCLOPENTANE-1-CARBOXYLIC ACID (FCP)-ALPHA-KETOGLUTARATE CAVEAT 5VWR PL6 A 501 HAS WRONG CHIRALITY AT ATOM CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPAT,TRANSAMINASE A; COMPND 5 EC: 2.6.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: ASPC, B0928, JW0911; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ASPARTATE AMINOTRANSFERASE, MECHANISM-BASED INACTIVATOR, KETIMINE, KEYWDS 2 (1R, 3S, 4S)-3-AMINO-4-FLUOROCYCLOPENTANE-1-CARBOXYLIC ACID (FCP), KEYWDS 3 ALPHA-KETOGLUTARATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.MASCARENHAS,D.LIU,H.LE,R.SILVERMAN REVDAT 4 13-MAR-24 5VWR 1 REMARK REVDAT 3 04-OCT-17 5VWR 1 JRNL REVDAT 2 20-SEP-17 5VWR 1 JRNL REMARK REVDAT 1 13-SEP-17 5VWR 0 JRNL AUTH R.MASCARENHAS,H.V.LE,K.D.CLEVENGER,H.J.LEHRER,D.RINGE, JRNL AUTH 2 N.L.KELLEHER,R.B.SILVERMAN,D.LIU JRNL TITL SELECTIVE TARGETING BY A MECHANISM-BASED INACTIVATOR AGAINST JRNL TITL 2 PYRIDOXAL 5'-PHOSPHATE-DEPENDENT ENZYMES: MECHANISMS OF JRNL TITL 3 INACTIVATION AND ALTERNATIVE TURNOVER. JRNL REF BIOCHEMISTRY V. 56 4951 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28816437 JRNL DOI 10.1021/ACS.BIOCHEM.7B00499 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 49.1 REMARK 3 NUMBER OF REFLECTIONS : 53898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.790 REMARK 3 FREE R VALUE TEST SET COUNT : 2043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.7512 - 4.1725 0.60 4231 161 0.1726 0.1934 REMARK 3 2 4.1725 - 3.3127 0.54 3838 149 0.1449 0.1649 REMARK 3 3 3.3127 - 2.8942 0.53 3691 153 0.1665 0.1761 REMARK 3 4 2.8942 - 2.6297 0.52 3677 139 0.1634 0.1629 REMARK 3 5 2.6297 - 2.4412 0.52 3630 143 0.1696 0.2028 REMARK 3 6 2.4412 - 2.2973 0.52 3669 142 0.1665 0.1865 REMARK 3 7 2.2973 - 2.1823 0.52 3629 150 0.1598 0.1888 REMARK 3 8 2.1823 - 2.0873 0.52 3626 147 0.1653 0.1925 REMARK 3 9 2.0873 - 2.0070 0.52 3625 139 0.1638 0.2218 REMARK 3 10 2.0070 - 1.9377 0.51 3625 145 0.1779 0.2055 REMARK 3 11 1.9377 - 1.8771 0.51 3592 130 0.1826 0.2241 REMARK 3 12 1.8771 - 1.8235 0.49 3482 152 0.1876 0.2017 REMARK 3 13 1.8235 - 1.7755 0.44 3089 117 0.1915 0.2060 REMARK 3 14 1.7755 - 1.7322 0.38 2626 101 0.2000 0.2764 REMARK 3 15 1.7322 - 1.7200 0.26 1825 75 0.2210 0.3267 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3224 REMARK 3 ANGLE : 1.138 4372 REMARK 3 CHIRALITY : 0.046 479 REMARK 3 PLANARITY : 0.006 573 REMARK 3 DIHEDRAL : 13.287 1194 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.5988 -26.2117 15.0881 REMARK 3 T TENSOR REMARK 3 T11: 0.2128 T22: 0.2110 REMARK 3 T33: 0.2043 T12: 0.0052 REMARK 3 T13: 0.0358 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.0812 L22: 0.0126 REMARK 3 L33: 0.0104 L12: -0.0533 REMARK 3 L13: -0.0367 L23: 0.0063 REMARK 3 S TENSOR REMARK 3 S11: -0.0185 S12: -0.0782 S13: -0.0298 REMARK 3 S21: 0.0696 S22: 0.1337 S23: -0.0375 REMARK 3 S31: -0.1018 S32: 0.1424 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -47.8322 -17.5028 10.0705 REMARK 3 T TENSOR REMARK 3 T11: 0.0876 T22: 0.0989 REMARK 3 T33: 0.1290 T12: 0.0066 REMARK 3 T13: -0.0057 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 0.4914 L22: 0.1957 REMARK 3 L33: 0.3269 L12: -0.0812 REMARK 3 L13: -0.1352 L23: 0.1143 REMARK 3 S TENSOR REMARK 3 S11: 0.0431 S12: 0.1240 S13: 0.1056 REMARK 3 S21: -0.0177 S22: -0.0009 S23: 0.0464 REMARK 3 S31: -0.0246 S32: -0.0739 S33: 0.0044 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.8428 -38.6055 -1.5319 REMARK 3 T TENSOR REMARK 3 T11: 0.2021 T22: 0.1728 REMARK 3 T33: 0.1441 T12: -0.0042 REMARK 3 T13: 0.0348 T23: -0.0518 REMARK 3 L TENSOR REMARK 3 L11: 0.1744 L22: 0.1663 REMARK 3 L33: 0.0379 L12: -0.1647 REMARK 3 L13: -0.0601 L23: 0.0646 REMARK 3 S TENSOR REMARK 3 S11: -0.0304 S12: 0.1565 S13: -0.2353 REMARK 3 S21: -0.0830 S22: -0.0371 S23: -0.0970 REMARK 3 S31: 0.1911 S32: 0.0070 S33: -0.0017 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): -47.5748 -25.5657 2.5304 REMARK 3 T TENSOR REMARK 3 T11: 0.0896 T22: 0.1428 REMARK 3 T33: 0.0643 T12: -0.0149 REMARK 3 T13: -0.0207 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.9425 L22: 0.4592 REMARK 3 L33: 0.1008 L12: -0.1590 REMARK 3 L13: -0.1971 L23: -0.0642 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: 0.2576 S13: 0.0311 REMARK 3 S21: -0.0418 S22: -0.0321 S23: 0.0738 REMARK 3 S31: 0.0394 S32: -0.1038 S33: 0.0296 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 408 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.7624 -17.3198 -5.0007 REMARK 3 T TENSOR REMARK 3 T11: 0.1313 T22: 0.1369 REMARK 3 T33: 0.1026 T12: 0.0023 REMARK 3 T13: 0.0699 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.3347 L22: 0.5942 REMARK 3 L33: 0.5560 L12: 0.4147 REMARK 3 L13: 0.0157 L23: 0.3028 REMARK 3 S TENSOR REMARK 3 S11: 0.1351 S12: 0.2613 S13: 0.1411 REMARK 3 S21: -0.2688 S22: 0.1259 S23: -0.2119 REMARK 3 S31: -0.0088 S32: 0.0445 S33: 0.2742 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VWR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000228088. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 273 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55946 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.99700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 MM POTASSIUM PHOSPHATE, 43% REMARK 280 SATURATED AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.70450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.70450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.20000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 77.76050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.20000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 77.76050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.70450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.20000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 77.76050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 38.70450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.20000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 77.76050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -84.40000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 38.70450 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 791 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 794 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 882 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 33 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 ASN A 347 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 897 O HOH A 908 1.85 REMARK 500 O HOH A 888 O HOH A 920 1.87 REMARK 500 O HOH A 644 O HOH A 745 1.89 REMARK 500 O HOH A 963 O HOH A 965 1.92 REMARK 500 OD1 ASP A 172 O HOH A 601 1.93 REMARK 500 O HOH A 783 O HOH A 921 1.95 REMARK 500 O HOH A 632 O HOH A 905 1.96 REMARK 500 O HOH A 654 O HOH A 809 1.98 REMARK 500 O HOH A 864 O HOH A 951 2.00 REMARK 500 O HOH A 858 O HOH A 881 2.06 REMARK 500 O HOH A 726 O HOH A 798 2.07 REMARK 500 O HOH A 844 O HOH A 874 2.07 REMARK 500 O HOH A 795 O HOH A 926 2.09 REMARK 500 O HOH A 946 O HOH A 955 2.13 REMARK 500 OE1 GLU A 204 O HOH A 602 2.13 REMARK 500 O HOH A 809 O HOH A 871 2.13 REMARK 500 O HOH A 856 O HOH A 901 2.14 REMARK 500 OD1 ASN A 179 O HOH A 603 2.15 REMARK 500 O HOH A 848 O HOH A 854 2.15 REMARK 500 O HOH A 605 O HOH A 683 2.16 REMARK 500 O HOH A 619 O HOH A 869 2.17 REMARK 500 O HOH A 874 O HOH A 889 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 678 O HOH A 844 8545 1.86 REMARK 500 O HOH A 724 O HOH A 914 3455 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 25 -62.10 -105.76 REMARK 500 ARG A 33 -39.62 64.29 REMARK 500 TYR A 161 -45.30 -146.22 REMARK 500 ARG A 266 73.38 61.33 REMARK 500 ARG A 266 70.07 64.22 REMARK 500 ASN A 294 -73.85 -109.04 REMARK 500 SER A 296 -58.46 77.14 REMARK 500 LYS A 344 -8.23 62.50 REMARK 500 LYS A 344 -4.10 58.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PL6 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VWO RELATED DB: PDB REMARK 900 RELATED ID: 5VWQ RELATED DB: PDB DBREF 5VWR A 13 408 UNP P00509 AAT_ECOLI 1 396 SEQRES 1 A 396 MET PHE GLU ASN ILE THR ALA ALA PRO ALA ASP PRO ILE SEQRES 2 A 396 LEU GLY LEU ALA ASP LEU PHE ARG ALA ASP GLU ARG PRO SEQRES 3 A 396 GLY LYS ILE ASN LEU GLY ILE GLY VAL TYR LYS ASP GLU SEQRES 4 A 396 THR GLY LYS THR PRO VAL LEU THR SER VAL LYS LYS ALA SEQRES 5 A 396 GLU GLN TYR LEU LEU GLU ASN GLU THR THR LYS ASN TYR SEQRES 6 A 396 LEU GLY ILE ASP GLY ILE PRO GLU PHE GLY ARG CYS THR SEQRES 7 A 396 GLN GLU LEU LEU PHE GLY LYS GLY SER ALA LEU ILE ASN SEQRES 8 A 396 ASP LYS ARG ALA ARG THR ALA GLN THR PRO GLY GLY THR SEQRES 9 A 396 GLY ALA LEU ARG VAL ALA ALA ASP PHE LEU ALA LYS ASN SEQRES 10 A 396 THR SER VAL LYS ARG VAL TRP VAL SER ASN PRO SER TRP SEQRES 11 A 396 PRO ASN HIS LYS SER VAL PHE ASN SER ALA GLY LEU GLU SEQRES 12 A 396 VAL ARG GLU TYR ALA TYR TYR ASP ALA GLU ASN HIS THR SEQRES 13 A 396 LEU ASP PHE ASP ALA LEU ILE ASN SER LEU ASN GLU ALA SEQRES 14 A 396 GLN ALA GLY ASP VAL VAL LEU PHE HIS GLY CYS CYS HIS SEQRES 15 A 396 ASN PRO THR GLY ILE ASP PRO THR LEU GLU GLN TRP GLN SEQRES 16 A 396 THR LEU ALA GLN LEU SER VAL GLU LYS GLY TRP LEU PRO SEQRES 17 A 396 LEU PHE ASP PHE ALA TYR GLN GLY PHE ALA ARG GLY LEU SEQRES 18 A 396 GLU GLU ASP ALA GLU GLY LEU ARG ALA PHE ALA ALA MET SEQRES 19 A 396 HIS LYS GLU LEU ILE VAL ALA SER SER TYR SER LYS ASN SEQRES 20 A 396 PHE GLY LEU TYR ASN GLU ARG VAL GLY ALA CYS THR LEU SEQRES 21 A 396 VAL ALA ALA ASP SER GLU THR VAL ASP ARG ALA PHE SER SEQRES 22 A 396 GLN MET LYS ALA ALA ILE ARG ALA ASN TYR SER ASN PRO SEQRES 23 A 396 PRO ALA HIS GLY ALA SER VAL VAL ALA THR ILE LEU SER SEQRES 24 A 396 ASN ASP ALA LEU ARG ALA ILE TRP GLU GLN GLU LEU THR SEQRES 25 A 396 ASP MET ARG GLN ARG ILE GLN ARG MET ARG GLN LEU PHE SEQRES 26 A 396 VAL ASN THR LEU GLN GLU LYS GLY ALA ASN ARG ASP PHE SEQRES 27 A 396 SER PHE ILE ILE LYS GLN ASN GLY MET PHE SER PHE SER SEQRES 28 A 396 GLY LEU THR LYS GLU GLN VAL LEU ARG LEU ARG GLU GLU SEQRES 29 A 396 PHE GLY VAL TYR ALA VAL ALA SER GLY ARG VAL ASN VAL SEQRES 30 A 396 ALA GLY MET THR PRO ASP ASN MET ALA PRO LEU CYS GLU SEQRES 31 A 396 ALA ILE VAL ALA VAL LEU HET PL6 A 501 25 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET GOL A 506 6 HETNAM PL6 (E)-N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY) HETNAM 2 PL6 METHYL]PYRIDIN-4-YL}METHYLIDENE)-L-GLUTAMIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PL6 C13 H17 N2 O9 P FORMUL 3 GOL 5(C3 H8 O3) FORMUL 8 HOH *366(H2 O) HELIX 1 AA1 LEU A 26 PHE A 32 1 7 HELIX 2 AA2 LEU A 58 GLU A 72 1 15 HELIX 3 AA3 ILE A 83 GLY A 96 1 14 HELIX 4 AA4 SER A 99 ASP A 104 1 6 HELIX 5 AA5 PRO A 113 THR A 130 1 18 HELIX 6 AA6 PRO A 143 ALA A 152 1 10 HELIX 7 AA7 ASP A 170 ASN A 179 1 10 HELIX 8 AA8 THR A 202 GLY A 217 1 16 HELIX 9 AA9 GLY A 232 ALA A 237 1 6 HELIX 10 AB1 ALA A 237 HIS A 247 1 11 HELIX 11 AB2 LEU A 262 ARG A 266 5 5 HELIX 12 AB3 ASP A 276 ALA A 293 1 18 HELIX 13 AB4 PRO A 299 SER A 311 1 13 HELIX 14 AB5 ASN A 312 GLU A 343 1 32 HELIX 15 AB6 SER A 351 GLN A 356 1 6 HELIX 16 AB7 THR A 366 GLY A 378 1 13 HELIX 17 AB8 ALA A 390 MET A 392 5 3 HELIX 18 AB9 ASN A 396 LEU A 408 1 13 SHEET 1 AA1 2 ILE A 41 ASN A 42 0 SHEET 2 AA1 2 VAL A 379 TYR A 380 1 O TYR A 380 N ILE A 41 SHEET 1 AA2 7 ALA A 107 THR A 112 0 SHEET 2 AA2 7 GLY A 268 VAL A 273 -1 O LEU A 272 N ARG A 108 SHEET 3 AA2 7 LEU A 250 SER A 255 -1 N VAL A 252 O THR A 271 SHEET 4 AA2 7 LEU A 219 PHE A 224 1 N PHE A 222 O ALA A 253 SHEET 5 AA2 7 VAL A 186 HIS A 190 1 N PHE A 189 O ASP A 223 SHEET 6 AA2 7 ARG A 134 ASN A 139 1 N TRP A 136 O LEU A 188 SHEET 7 AA2 7 GLU A 155 ALA A 160 1 O ARG A 157 N VAL A 137 SHEET 1 AA3 2 TYR A 162 ASP A 163 0 SHEET 2 AA3 2 THR A 168 LEU A 169 -1 O THR A 168 N ASP A 163 SHEET 1 AA4 2 PHE A 360 PHE A 362 0 SHEET 2 AA4 2 ARG A 386 ASN A 388 -1 O VAL A 387 N SER A 361 CISPEP 1 ASN A 139 PRO A 140 0 4.49 CISPEP 2 ASN A 195 PRO A 196 0 17.26 CISPEP 3 ALA A 346 ASN A 347 0 10.13 SITE 1 AC1 18 ILE A 25 ILE A 45 GLY A 46 TYR A 77 SITE 2 AC1 18 GLY A 114 GLY A 115 THR A 116 TRP A 142 SITE 3 AC1 18 ASN A 195 ASP A 223 TYR A 226 SER A 255 SITE 4 AC1 18 SER A 257 LYS A 258 ARG A 266 ARG A 292 SITE 5 AC1 18 ARG A 386 HOH A 711 SITE 1 AC2 7 LYS A 146 ASN A 150 GLU A 155 VAL A 156 SITE 2 AC2 7 ARG A 157 HOH A 654 HOH A 809 SITE 1 AC3 4 PRO A 84 ARG A 88 HOH A 775 HOH A 783 SITE 1 AC4 3 ARG A 327 GLN A 328 HOH A 604 SITE 1 AC5 6 LEU A 26 ASP A 30 GLY A 79 ILE A 80 SITE 2 AC5 6 LYS A 288 HOH A 699 SITE 1 AC6 9 PRO A 21 ASP A 23 ILE A 80 SER A 285 SITE 2 AC6 9 LYS A 288 ALA A 289 HOH A 662 HOH A 676 SITE 3 AC6 9 HOH A 722 CRYST1 84.400 155.521 77.409 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011848 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012918 0.00000