HEADER APOPTOSIS 23-MAY-17 5VX2 TITLE MCL-1 IN COMPLEX WITH BIM-H3PC-RT COMPND MOL_ID: 1; COMPND 2 MOLECULE: INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL-1 COMPND 3 HOMOLOG,INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL-1 COMPND 4 CHIMERA; COMPND 5 CHAIN: A, C; COMPND 6 FRAGMENT: UNP P97287 RESIDUES 152-189, UNP Q07820 RESIDUES 209-327; COMPND 7 SYNONYM: BCL-2-RELATED PROTEIN EAT/MCL1,BCL-2-LIKE PROTEIN 3,BCL2-L- COMPND 8 3,BCL-2-RELATED PROTEIN EAT/MCL1,MCL1/EAT; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: BCL-2-LIKE PROTEIN 11; COMPND 12 CHAIN: B, D; COMPND 13 FRAGMENT: UNP RESIDUES 141-166; COMPND 14 SYNONYM: BCL2-L-11,BCL2-INTERACTING MEDIATOR OF CELL DEATH; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: MOUSE, HUMAN; SOURCE 4 ORGANISM_TAXID: 10090, 9606; SOURCE 5 GENE: MCL1, MCL1, BCL2L3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS APOPTOSIS, BCL-2 FAMILY, PRO-SURIVIAL EXPDTA X-RAY DIFFRACTION AUTHOR A.D.COWAN,J.M.BROUWER,P.M.COLMAN,P.E.CZABOTAR REVDAT 3 08-JAN-20 5VX2 1 REMARK REVDAT 2 29-NOV-17 5VX2 1 JRNL REVDAT 1 15-NOV-17 5VX2 0 JRNL AUTH J.M.BROUWER,P.LAN,A.D.COWAN,J.P.BERNARDINI,R.W.BIRKINSHAW, JRNL AUTH 2 M.F.VAN DELFT,B.E.SLEEBS,A.Y.ROBIN,A.WARDAK,I.K.TAN, JRNL AUTH 3 B.RELJIC,E.F.LEE,W.D.FAIRLIE,M.J.CALL,B.J.SMITH,G.DEWSON, JRNL AUTH 4 G.LESSENE,P.M.COLMAN,P.E.CZABOTAR JRNL TITL CONVERSION OF BIM-BH3 FROM ACTIVATOR TO INHIBITOR OF BAK JRNL TITL 2 THROUGH STRUCTURE-BASED DESIGN. JRNL REF MOL. CELL V. 68 659 2017 JRNL REFN ISSN 1097-4164 JRNL PMID 29149594 JRNL DOI 10.1016/J.MOLCEL.2017.11.001 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 34460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.3160 - 4.4575 0.96 2326 136 0.1497 0.1700 REMARK 3 2 4.4575 - 3.5395 1.00 2337 149 0.1357 0.1842 REMARK 3 3 3.5395 - 3.0925 1.00 2335 141 0.1626 0.2012 REMARK 3 4 3.0925 - 2.8099 1.00 2331 139 0.1851 0.2214 REMARK 3 5 2.8099 - 2.6086 1.00 2326 147 0.1837 0.2378 REMARK 3 6 2.6086 - 2.4549 1.00 2336 142 0.1823 0.2183 REMARK 3 7 2.4549 - 2.3320 1.00 2335 144 0.1842 0.2394 REMARK 3 8 2.3320 - 2.2305 1.00 2321 139 0.1756 0.2259 REMARK 3 9 2.2305 - 2.1446 1.00 2338 147 0.1775 0.2398 REMARK 3 10 2.1446 - 2.0706 1.00 2302 144 0.1918 0.2377 REMARK 3 11 2.0706 - 2.0059 1.00 2298 140 0.2081 0.2819 REMARK 3 12 2.0059 - 1.9486 1.00 2342 147 0.2335 0.2862 REMARK 3 13 1.9486 - 1.8973 1.00 2308 145 0.2631 0.2729 REMARK 3 14 1.8973 - 1.8510 0.96 2227 138 0.3210 0.3654 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2959 REMARK 3 ANGLE : 0.761 3985 REMARK 3 CHIRALITY : 0.046 431 REMARK 3 PLANARITY : 0.014 526 REMARK 3 DIHEDRAL : 16.914 1798 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9556 -13.8631 31.3235 REMARK 3 T TENSOR REMARK 3 T11: 0.3289 T22: 0.2913 REMARK 3 T33: 0.2294 T12: 0.0106 REMARK 3 T13: 0.0191 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 6.0412 L22: 6.2400 REMARK 3 L33: 4.2437 L12: -5.0899 REMARK 3 L13: -4.1790 L23: 5.0848 REMARK 3 S TENSOR REMARK 3 S11: -0.4094 S12: -0.2204 S13: -0.0314 REMARK 3 S21: 0.6223 S22: 0.3624 S23: -0.0999 REMARK 3 S31: 0.5688 S32: 0.1716 S33: 0.1312 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 192 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9763 -12.8299 39.5648 REMARK 3 T TENSOR REMARK 3 T11: 0.5862 T22: 0.4738 REMARK 3 T33: 0.4335 T12: 0.0172 REMARK 3 T13: 0.0257 T23: -0.0622 REMARK 3 L TENSOR REMARK 3 L11: 2.4158 L22: 2.2214 REMARK 3 L33: 4.2537 L12: -1.7561 REMARK 3 L13: 2.0046 L23: -3.0059 REMARK 3 S TENSOR REMARK 3 S11: 0.1563 S12: 0.5090 S13: -0.3328 REMARK 3 S21: -0.1243 S22: -0.1185 S23: -0.5865 REMARK 3 S31: 0.5300 S32: 0.1679 S33: -0.1087 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9016 -0.9824 26.0395 REMARK 3 T TENSOR REMARK 3 T11: 0.2618 T22: 0.2783 REMARK 3 T33: 0.2086 T12: -0.0497 REMARK 3 T13: 0.0082 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 4.5982 L22: 7.1366 REMARK 3 L33: 7.7405 L12: -2.9109 REMARK 3 L13: 2.2205 L23: -2.3785 REMARK 3 S TENSOR REMARK 3 S11: -0.3733 S12: -0.3799 S13: 0.0942 REMARK 3 S21: 0.4417 S22: 0.2225 S23: -0.1303 REMARK 3 S31: -0.7848 S32: 0.0653 S33: 0.1667 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 236 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7529 -11.0029 16.1346 REMARK 3 T TENSOR REMARK 3 T11: 0.4602 T22: 0.3949 REMARK 3 T33: 0.4411 T12: -0.1297 REMARK 3 T13: 0.0602 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 2.3930 L22: 6.5410 REMARK 3 L33: 8.0118 L12: -0.4093 REMARK 3 L13: -1.7338 L23: 0.8941 REMARK 3 S TENSOR REMARK 3 S11: 0.0558 S12: -0.3234 S13: -0.4490 REMARK 3 S21: 0.3718 S22: -0.1375 S23: 1.1410 REMARK 3 S31: 0.4522 S32: -0.6140 S33: 0.0828 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 280 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4067 -5.2554 22.4915 REMARK 3 T TENSOR REMARK 3 T11: 0.2705 T22: 0.1920 REMARK 3 T33: 0.2163 T12: -0.0528 REMARK 3 T13: -0.0198 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 6.9759 L22: 3.7903 REMARK 3 L33: 6.8548 L12: -1.0278 REMARK 3 L13: -3.7009 L23: 1.3099 REMARK 3 S TENSOR REMARK 3 S11: 0.0722 S12: -0.0730 S13: 0.4033 REMARK 3 S21: -0.1258 S22: 0.2412 S23: -0.0067 REMARK 3 S31: -0.3837 S32: 0.1087 S33: -0.3026 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 281 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5904 -14.2856 25.1817 REMARK 3 T TENSOR REMARK 3 T11: 0.3666 T22: 0.3559 REMARK 3 T33: 0.3820 T12: -0.0343 REMARK 3 T13: 0.0129 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 5.1867 L22: 5.5869 REMARK 3 L33: 7.2704 L12: -5.3187 REMARK 3 L13: -4.9915 L23: 4.6705 REMARK 3 S TENSOR REMARK 3 S11: -0.2924 S12: -0.1166 S13: -1.0937 REMARK 3 S21: 0.0002 S22: -0.1197 S23: 0.8419 REMARK 3 S31: 0.2122 S32: -0.4334 S33: 0.4070 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 302 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5458 -11.4298 23.1779 REMARK 3 T TENSOR REMARK 3 T11: 0.1817 T22: 0.3793 REMARK 3 T33: 0.3954 T12: -0.0357 REMARK 3 T13: -0.0012 T23: -0.0533 REMARK 3 L TENSOR REMARK 3 L11: 5.7708 L22: 7.9330 REMARK 3 L33: 7.8426 L12: 1.4573 REMARK 3 L13: 0.2858 L23: 0.5482 REMARK 3 S TENSOR REMARK 3 S11: -0.2785 S12: -0.2950 S13: 0.0005 REMARK 3 S21: -0.0674 S22: 0.1839 S23: -1.1151 REMARK 3 S31: 0.1086 S32: 0.9887 S33: 0.0768 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9245 -1.0638 13.2024 REMARK 3 T TENSOR REMARK 3 T11: 0.3851 T22: 0.2779 REMARK 3 T33: 0.2600 T12: -0.1081 REMARK 3 T13: 0.0324 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 9.5355 L22: 3.1326 REMARK 3 L33: 3.7171 L12: -1.0601 REMARK 3 L13: 0.9628 L23: 0.5621 REMARK 3 S TENSOR REMARK 3 S11: -0.3210 S12: 0.2167 S13: 0.2585 REMARK 3 S21: -0.5097 S22: 0.2566 S23: -0.2823 REMARK 3 S31: -0.6369 S32: 0.3564 S33: 0.2057 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 172 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3338 28.7519 6.7023 REMARK 3 T TENSOR REMARK 3 T11: 0.5309 T22: 0.3643 REMARK 3 T33: 0.2698 T12: -0.0464 REMARK 3 T13: 0.0926 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 2.9833 L22: 4.1091 REMARK 3 L33: 6.4803 L12: 1.7776 REMARK 3 L13: 2.3596 L23: 5.0670 REMARK 3 S TENSOR REMARK 3 S11: -0.2025 S12: 0.3106 S13: 0.0539 REMARK 3 S21: -1.0419 S22: 0.5653 S23: -0.3212 REMARK 3 S31: -0.7773 S32: 0.4098 S33: -0.3477 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 192 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8608 26.4407 0.0458 REMARK 3 T TENSOR REMARK 3 T11: 0.7816 T22: 0.6199 REMARK 3 T33: 0.4183 T12: 0.0317 REMARK 3 T13: 0.1672 T23: -0.1917 REMARK 3 L TENSOR REMARK 3 L11: 6.9500 L22: 2.8134 REMARK 3 L33: 7.0932 L12: -0.3138 REMARK 3 L13: 1.5335 L23: -2.2231 REMARK 3 S TENSOR REMARK 3 S11: 0.1662 S12: -0.9417 S13: 1.1038 REMARK 3 S21: 1.4067 S22: 0.1937 S23: 0.4232 REMARK 3 S31: -0.1049 S32: 0.0111 S33: -0.2307 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 203 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5121 16.1787 11.2026 REMARK 3 T TENSOR REMARK 3 T11: 0.3261 T22: 0.3064 REMARK 3 T33: 0.2113 T12: 0.0794 REMARK 3 T13: 0.0359 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 7.8358 L22: 6.0775 REMARK 3 L33: 4.5422 L12: 2.6780 REMARK 3 L13: -1.1894 L23: 0.3152 REMARK 3 S TENSOR REMARK 3 S11: -0.3135 S12: 0.3677 S13: -0.4339 REMARK 3 S21: -0.4521 S22: 0.2707 S23: -0.4778 REMARK 3 S31: 0.3572 S32: 0.4472 S33: 0.1037 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 236 THROUGH 280 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0189 22.8476 14.6561 REMARK 3 T TENSOR REMARK 3 T11: 0.3233 T22: 0.1816 REMARK 3 T33: 0.2369 T12: 0.0460 REMARK 3 T13: -0.0028 T23: 0.0510 REMARK 3 L TENSOR REMARK 3 L11: 3.7565 L22: 3.1188 REMARK 3 L33: 7.4673 L12: 1.0832 REMARK 3 L13: -1.0450 L23: 3.2101 REMARK 3 S TENSOR REMARK 3 S11: -0.1313 S12: 0.2371 S13: 0.1793 REMARK 3 S21: -0.4347 S22: 0.0279 S23: 0.1632 REMARK 3 S31: -0.3110 S32: -0.2698 S33: 0.1404 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 281 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7239 29.4475 8.9300 REMARK 3 T TENSOR REMARK 3 T11: 0.4887 T22: 0.3654 REMARK 3 T33: 0.3292 T12: 0.0663 REMARK 3 T13: 0.0431 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 8.2589 L22: 8.3939 REMARK 3 L33: 4.2690 L12: 5.2935 REMARK 3 L13: 5.6404 L23: 5.0511 REMARK 3 S TENSOR REMARK 3 S11: -0.2088 S12: 0.1380 S13: 0.7263 REMARK 3 S21: -0.7634 S22: -0.2995 S23: 0.3823 REMARK 3 S31: -0.8781 S32: -0.6793 S33: 0.4997 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 302 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7637 27.0139 20.4625 REMARK 3 T TENSOR REMARK 3 T11: 0.2478 T22: 0.5161 REMARK 3 T33: 0.3947 T12: 0.0790 REMARK 3 T13: -0.0295 T23: -0.1356 REMARK 3 L TENSOR REMARK 3 L11: 7.0381 L22: 7.3659 REMARK 3 L33: 7.4116 L12: -4.0270 REMARK 3 L13: -4.5801 L23: 3.1803 REMARK 3 S TENSOR REMARK 3 S11: 0.1597 S12: -0.0220 S13: -0.0355 REMARK 3 S21: -0.0574 S22: 0.3827 S23: -0.9753 REMARK 3 S31: -0.2392 S32: 1.3876 S33: -0.4642 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 51 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1004 16.3995 23.4705 REMARK 3 T TENSOR REMARK 3 T11: 0.3820 T22: 0.1754 REMARK 3 T33: 0.1805 T12: 0.1013 REMARK 3 T13: 0.0203 T23: 0.0189 REMARK 3 L TENSOR REMARK 3 L11: 8.4319 L22: 6.5862 REMARK 3 L33: 8.4376 L12: -0.0945 REMARK 3 L13: 1.9238 L23: 0.0182 REMARK 3 S TENSOR REMARK 3 S11: 0.0714 S12: -0.3397 S13: -0.2095 REMARK 3 S21: 0.2385 S22: 0.0838 S23: 0.0905 REMARK 3 S31: 0.6836 S32: -0.0043 S33: -0.1221 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VX2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000227662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34486 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.851 REMARK 200 RESOLUTION RANGE LOW (A) : 32.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG 3000, 100 MM TRISODIUM REMARK 280 CITRATE BUFFERED WITH CITRIC ACID PH 5.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.07850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 166 REMARK 465 PRO A 167 REMARK 465 LEU A 168 REMARK 465 GLY A 169 REMARK 465 SER A 170 REMARK 465 GLU A 171 REMARK 465 ASP A 323 REMARK 465 LEU A 324 REMARK 465 GLU A 325 REMARK 465 GLY A 326 REMARK 465 GLY A 327 REMARK 465 ASP B 51 REMARK 465 MET B 52 REMARK 465 ARG B 76 REMARK 465 GLY C 166 REMARK 465 PRO C 167 REMARK 465 LEU C 168 REMARK 465 GLY C 169 REMARK 465 SER C 170 REMARK 465 GLU C 171 REMARK 465 GLU C 322 REMARK 465 ASP C 323 REMARK 465 LEU C 324 REMARK 465 GLU C 325 REMARK 465 GLY C 326 REMARK 465 GLY C 327 REMARK 465 ARG D 76 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 187 O HOH A 501 2.01 REMARK 500 NZ LYS A 238 O HOH A 502 2.03 REMARK 500 OG SER A 247 OG SER A 293 2.10 REMARK 500 O HOH A 511 O HOH B 102 2.12 REMARK 500 O HOH D 113 O HOH D 123 2.13 REMARK 500 NE2 GLN B 60 O HOH B 101 2.19 REMARK 500 NH1 ARG A 300 O HOH A 503 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 204 -54.47 61.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 591 DISTANCE = 7.17 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO C 402 DBREF 5VX2 A 171 208 UNP P97287 MCL1_MOUSE 152 189 DBREF 5VX2 A 209 327 UNP Q07820 MCL1_HUMAN 209 327 DBREF 5VX2 B 51 76 UNP O43521 B2L11_HUMAN 141 166 DBREF 5VX2 C 171 208 UNP P97287 MCL1_MOUSE 152 189 DBREF 5VX2 C 209 327 UNP Q07820 MCL1_HUMAN 209 327 DBREF 5VX2 D 51 76 UNP O43521 B2L11_HUMAN 141 166 SEQADV 5VX2 GLY A 166 UNP P97287 EXPRESSION TAG SEQADV 5VX2 PRO A 167 UNP P97287 EXPRESSION TAG SEQADV 5VX2 LEU A 168 UNP P97287 EXPRESSION TAG SEQADV 5VX2 GLY A 169 UNP P97287 EXPRESSION TAG SEQADV 5VX2 SER A 170 UNP P97287 EXPRESSION TAG SEQADV 5VX2 ARG B 57 UNP O43521 TRP 147 ENGINEERED MUTATION SEQADV 5VX2 THR B 72 UNP O43521 TYR 162 ENGINEERED MUTATION SEQADV 5VX2 GLY C 166 UNP P97287 EXPRESSION TAG SEQADV 5VX2 PRO C 167 UNP P97287 EXPRESSION TAG SEQADV 5VX2 LEU C 168 UNP P97287 EXPRESSION TAG SEQADV 5VX2 GLY C 169 UNP P97287 EXPRESSION TAG SEQADV 5VX2 SER C 170 UNP P97287 EXPRESSION TAG SEQADV 5VX2 ARG D 57 UNP O43521 TRP 147 ENGINEERED MUTATION SEQADV 5VX2 THR D 72 UNP O43521 TYR 162 ENGINEERED MUTATION SEQRES 1 A 162 GLY PRO LEU GLY SER GLU ASP ASP LEU TYR ARG GLN SER SEQRES 2 A 162 LEU GLU ILE ILE SER ARG TYR LEU ARG GLU GLN ALA THR SEQRES 3 A 162 GLY SER LYS ASP SER LYS PRO LEU GLY GLU ALA GLY ALA SEQRES 4 A 162 ALA GLY ARG ARG ALA LEU GLU THR LEU ARG ARG VAL GLY SEQRES 5 A 162 ASP GLY VAL GLN ARG ASN HIS GLU THR ALA PHE GLN GLY SEQRES 6 A 162 MET LEU ARG LYS LEU ASP ILE LYS ASN GLU ASP ASP VAL SEQRES 7 A 162 LYS SER LEU SER ARG VAL MET ILE HIS VAL PHE SER ASP SEQRES 8 A 162 GLY VAL THR ASN TRP GLY ARG ILE VAL THR LEU ILE SER SEQRES 9 A 162 PHE GLY ALA PHE VAL ALA LYS HIS LEU LYS THR ILE ASN SEQRES 10 A 162 GLN GLU SER CYS ILE GLU PRO LEU ALA GLU SER ILE THR SEQRES 11 A 162 ASP VAL LEU VAL ARG THR LYS ARG ASP TRP LEU VAL LYS SEQRES 12 A 162 GLN ARG GLY TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL SEQRES 13 A 162 GLU ASP LEU GLU GLY GLY SEQRES 1 B 26 ASP MET ARG PRO GLU ILE ARG ILE ALA GLN GLU LEU ARG SEQRES 2 B 26 ARG 9R1 GLY ASP GLU PHE ASN ALA THR TYR ALA ARG ARG SEQRES 1 C 162 GLY PRO LEU GLY SER GLU ASP ASP LEU TYR ARG GLN SER SEQRES 2 C 162 LEU GLU ILE ILE SER ARG TYR LEU ARG GLU GLN ALA THR SEQRES 3 C 162 GLY SER LYS ASP SER LYS PRO LEU GLY GLU ALA GLY ALA SEQRES 4 C 162 ALA GLY ARG ARG ALA LEU GLU THR LEU ARG ARG VAL GLY SEQRES 5 C 162 ASP GLY VAL GLN ARG ASN HIS GLU THR ALA PHE GLN GLY SEQRES 6 C 162 MET LEU ARG LYS LEU ASP ILE LYS ASN GLU ASP ASP VAL SEQRES 7 C 162 LYS SER LEU SER ARG VAL MET ILE HIS VAL PHE SER ASP SEQRES 8 C 162 GLY VAL THR ASN TRP GLY ARG ILE VAL THR LEU ILE SER SEQRES 9 C 162 PHE GLY ALA PHE VAL ALA LYS HIS LEU LYS THR ILE ASN SEQRES 10 C 162 GLN GLU SER CYS ILE GLU PRO LEU ALA GLU SER ILE THR SEQRES 11 C 162 ASP VAL LEU VAL ARG THR LYS ARG ASP TRP LEU VAL LYS SEQRES 12 C 162 GLN ARG GLY TRP ASP GLY PHE VAL GLU PHE PHE HIS VAL SEQRES 13 C 162 GLU ASP LEU GLU GLY GLY SEQRES 1 D 26 ASP MET ARG PRO GLU ILE ARG ILE ALA GLN GLU LEU ARG SEQRES 2 D 26 ARG 9R1 GLY ASP GLU PHE ASN ALA THR TYR ALA ARG ARG MODRES 5VX2 9R1 B 65 ILE MODIFIED RESIDUE MODRES 5VX2 9R1 D 65 ILE MODIFIED RESIDUE HET 9R1 B 65 12 HET 9R1 D 65 12 HET EDO A 401 10 HET EDO C 401 4 HET EDO C 402 10 HETNAM 9R1 (2S)-2-AMINOOCTANEDIOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 9R1 2(C8 H15 N O4) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 8 HOH *211(H2 O) HELIX 1 AA1 ASP A 172 GLY A 192 1 21 HELIX 2 AA2 ALA A 204 ASP A 236 1 33 HELIX 3 AA3 ASN A 239 ASP A 241 5 3 HELIX 4 AA4 ASP A 242 PHE A 254 1 13 HELIX 5 AA5 SER A 255 GLY A 257 5 3 HELIX 6 AA6 ASN A 260 ILE A 281 1 22 HELIX 7 AA7 GLN A 283 SER A 285 5 3 HELIX 8 AA8 CYS A 286 GLN A 309 1 24 HELIX 9 AA9 ARG A 310 PHE A 319 1 10 HELIX 10 AB1 PRO B 54 ARG B 75 1 22 HELIX 11 AB2 ASP C 173 GLY C 192 1 20 HELIX 12 AB3 ALA C 202 ASP C 236 1 35 HELIX 13 AB4 GLU C 240 ASP C 242 5 3 HELIX 14 AB5 VAL C 243 PHE C 254 1 12 HELIX 15 AB6 SER C 255 GLY C 257 5 3 HELIX 16 AB7 ASN C 260 ILE C 281 1 22 HELIX 17 AB8 GLN C 283 SER C 285 5 3 HELIX 18 AB9 CYS C 286 GLN C 309 1 24 HELIX 19 AC1 ARG C 310 PHE C 319 1 10 HELIX 20 AC2 MET D 52 ARG D 75 1 24 LINK C ARG B 64 N 9R1 B 65 1555 1555 1.32 LINK C 9R1 B 65 N GLY B 66 1555 1555 1.33 LINK C ARG D 64 N 9R1 D 65 1555 1555 1.32 LINK C 9R1 D 65 N GLY D 66 1555 1555 1.32 SITE 1 AC1 2 ASP A 172 ARG A 176 SITE 1 AC2 4 THR C 301 LYS C 302 ASP C 304 TRP C 305 SITE 1 AC3 2 ASP C 172 ARG C 176 CRYST1 42.031 66.157 76.673 90.00 105.02 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023792 0.000000 0.006382 0.00000 SCALE2 0.000000 0.015116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013503 0.00000