HEADER GMP BINDING PROTEIN 23-MAY-17 5VX6 TITLE STRUCTURE OF BACILLUS SUBTILIS INHIBITOR OF MOTILITY (MOTI/DGRA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YPFA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS (STRAIN 168); SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YPFA, JOFA, BSU22910; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS C-DI-GMP, YCGR, MOTI, PILZ, DGRA, YPFA, MOTILITY, GMP BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.SUBRAMANIAN,C.DANN III REVDAT 5 13-MAR-24 5VX6 1 REMARK REVDAT 4 01-JAN-20 5VX6 1 HETSYN REVDAT 3 05-DEC-18 5VX6 1 JRNL REVDAT 2 17-JAN-18 5VX6 1 REMARK REVDAT 1 22-NOV-17 5VX6 0 JRNL AUTH S.SUBRAMANIAN,X.GAO,C.E.DANN 3RD.,D.B.KEARNS JRNL TITL MOTI (DGRA) ACTS AS A MOLECULAR CLUTCH ON THE FLAGELLAR JRNL TITL 2 STATOR PROTEIN MOTA INBACILLUS SUBTILIS. JRNL REF PROC. NATL. ACAD. SCI. V. 114 13537 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29196522 JRNL DOI 10.1073/PNAS.1716231114 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 11077 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7977 - 6.3887 0.98 1499 167 0.2017 0.2381 REMARK 3 2 6.3887 - 5.0729 0.99 1391 155 0.2314 0.2642 REMARK 3 3 5.0729 - 4.4322 0.98 1333 150 0.1903 0.2349 REMARK 3 4 4.4322 - 4.0272 0.98 1338 147 0.2289 0.2807 REMARK 3 5 4.0272 - 3.7387 0.97 1283 145 0.2627 0.3010 REMARK 3 6 3.7387 - 3.5183 0.97 1297 143 0.2839 0.3208 REMARK 3 7 3.5183 - 3.3422 0.85 1129 126 0.2968 0.3386 REMARK 3 8 3.3422 - 3.1967 0.53 696 78 0.3490 0.4044 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3438 REMARK 3 ANGLE : 0.861 4702 REMARK 3 CHIRALITY : 0.054 558 REMARK 3 PLANARITY : 0.003 577 REMARK 3 DIHEDRAL : 16.584 2094 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VX6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000227138. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK SI(111) SAGITALLY REMARK 200 FOCUSED MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11077 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.197 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 15.40 REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.37800 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23- 24 % PEG3350 0.1M BIS-TRIS PROPANE REMARK 280 PH-6.5 0.2M NA-K TARTARATE, PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 268.31333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 134.15667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 201.23500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.07833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 335.39167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 268.31333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 134.15667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 67.07833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 201.23500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 335.39167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 GLY A 116 REMARK 465 ASN A 117 REMARK 465 LYS A 213 REMARK 465 GLY B -2 REMARK 465 ALA B -1 REMARK 465 PRO B 115 REMARK 465 GLY B 116 REMARK 465 ASN B 117 REMARK 465 ARG B 212 REMARK 465 LYS B 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 2 CG1 CG2 CD1 REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 ILE A 28 CG1 CG2 CD1 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 ASN A 30 CG OD1 ND2 REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 ARG A 122 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 LYS A 181 CG CD CE NZ REMARK 470 ARG A 211 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 212 CG CD NE CZ NH1 NH2 REMARK 470 MET B 0 CG SD CE REMARK 470 ILE B 4 CG1 CG2 CD1 REMARK 470 GLU B 15 CG CD OE1 OE2 REMARK 470 GLU B 17 CG CD OE1 OE2 REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 LYS B 20 CG CD CE NZ REMARK 470 GLU B 29 CG CD OE1 OE2 REMARK 470 ASN B 30 CG OD1 ND2 REMARK 470 ASN B 31 CG OD1 ND2 REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 GLU B 64 CG CD OE1 OE2 REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 LYS B 80 CG CD CE NZ REMARK 470 GLU B 87 CG CD OE1 OE2 REMARK 470 ARG B 91 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 93 CG CD CE NZ REMARK 470 LYS B 95 CG CD CE NZ REMARK 470 GLN B 101 CG CD OE1 NE2 REMARK 470 GLU B 118 CG CD OE1 OE2 REMARK 470 GLU B 119 CG CD OE1 OE2 REMARK 470 GLN B 144 CG CD OE1 NE2 REMARK 470 ARG B 205 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 211 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 171 OE1 GLU A 187 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 206 OE1 GLU B 159 8556 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 16 -1.49 71.72 REMARK 500 SER A 23 -160.66 -121.82 REMARK 500 ASN A 30 -127.70 58.53 REMARK 500 PRO A 38 99.12 -68.62 REMARK 500 SER A 71 -153.94 -151.59 REMARK 500 ASP A 79 -35.42 -136.26 REMARK 500 LYS A 80 -6.36 -164.11 REMARK 500 PRO A 89 -168.98 -77.64 REMARK 500 PRO A 90 -153.64 -65.62 REMARK 500 GLU A 119 -133.05 -77.55 REMARK 500 PHE A 143 -162.82 -123.82 REMARK 500 GLU A 158 -147.69 50.40 REMARK 500 TYR A 188 108.99 -58.85 REMARK 500 GLU B 15 -132.94 55.12 REMARK 500 GLU B 29 -89.01 -82.76 REMARK 500 ASN B 30 -136.61 -77.69 REMARK 500 ASN B 31 41.95 -84.61 REMARK 500 ASP B 79 -116.02 56.67 REMARK 500 GLN B 98 69.51 -164.28 REMARK 500 ARG B 99 31.24 -96.62 REMARK 500 GLU B 120 113.18 76.25 REMARK 500 THR B 123 -169.47 -110.82 REMARK 500 GLU B 158 -126.35 59.43 REMARK 500 GLU B 180 -2.98 64.94 REMARK 500 SER B 189 -72.00 -85.23 REMARK 500 LYS B 210 42.00 -89.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2E A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2E A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2E B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C2E B 302 DBREF 5VX6 A 2 213 UNP P38491 YPFA_BACSU 2 213 DBREF 5VX6 B 2 213 UNP P38491 YPFA_BACSU 2 213 SEQADV 5VX6 GLY A -2 UNP P38491 EXPRESSION TAG SEQADV 5VX6 ALA A -1 UNP P38491 EXPRESSION TAG SEQADV 5VX6 MET A 0 UNP P38491 EXPRESSION TAG SEQADV 5VX6 GLY A 1 UNP P38491 EXPRESSION TAG SEQADV 5VX6 GLY B -2 UNP P38491 EXPRESSION TAG SEQADV 5VX6 ALA B -1 UNP P38491 EXPRESSION TAG SEQADV 5VX6 MET B 0 UNP P38491 EXPRESSION TAG SEQADV 5VX6 GLY B 1 UNP P38491 EXPRESSION TAG SEQRES 1 A 216 GLY ALA MET GLY ILE GLU ILE GLY GLU ASN VAL LEU LEU SEQRES 2 A 216 GLU TYR ILE GLU GLU ASN GLU LEU LYS LYS ALA LYS SER SEQRES 3 A 216 LYS ALA VAL SER ILE GLU ASN ASN GLU LEU LEU ILE ALA SEQRES 4 A 216 TYR PRO VAL ASP VAL VAL THR GLY ARG THR VAL ILE LEU SEQRES 5 A 216 HIS ASN ASP MET GLU VAL THR VAL GLU PHE VAL GLY LYS SEQRES 6 A 216 ASP GLU VAL PRO TYR ARG PHE ILE SER ARG ILE LYS GLY SEQRES 7 A 216 LYS VAL LYS ASP LYS LEU GLN MET ILE CYS LEU GLU MET SEQRES 8 A 216 PRO PRO ARG GLU LYS MET LYS ARG ILE GLN ARG ARG GLN SEQRES 9 A 216 TYR VAL ARG THR ASP ALA VAL LEU ASP VAL GLN ILE GLN SEQRES 10 A 216 PRO GLY ASN GLU GLU GLU ILE ARG THR LEU SER TYR ASN SEQRES 11 A 216 ILE SER ALA GLY GLY ILE ALA VAL VAL LEU ALA ASP GLY SEQRES 12 A 216 LEU SER PHE GLN SER GLY GLU SER LEU ARG LEU ILE ILE SEQRES 13 A 216 ARG LEU PRO GLU GLU GLU HIS THR ARG GLN ILE GLU THR SEQRES 14 A 216 GLU ALA VAL VAL ARG ARG ILE PHE ASN ASP PRO LYS SER SEQRES 15 A 216 GLU LYS ARG LYS MET THR LEU GLU TYR SER GLU ILE ALA SEQRES 16 A 216 ALA GLY ASP GLN GLN ALA LEU LEU GLN TYR CYS ILE ARG SEQRES 17 A 216 ARG GLN LEU ASN LYS ARG ARG LYS SEQRES 1 B 216 GLY ALA MET GLY ILE GLU ILE GLY GLU ASN VAL LEU LEU SEQRES 2 B 216 GLU TYR ILE GLU GLU ASN GLU LEU LYS LYS ALA LYS SER SEQRES 3 B 216 LYS ALA VAL SER ILE GLU ASN ASN GLU LEU LEU ILE ALA SEQRES 4 B 216 TYR PRO VAL ASP VAL VAL THR GLY ARG THR VAL ILE LEU SEQRES 5 B 216 HIS ASN ASP MET GLU VAL THR VAL GLU PHE VAL GLY LYS SEQRES 6 B 216 ASP GLU VAL PRO TYR ARG PHE ILE SER ARG ILE LYS GLY SEQRES 7 B 216 LYS VAL LYS ASP LYS LEU GLN MET ILE CYS LEU GLU MET SEQRES 8 B 216 PRO PRO ARG GLU LYS MET LYS ARG ILE GLN ARG ARG GLN SEQRES 9 B 216 TYR VAL ARG THR ASP ALA VAL LEU ASP VAL GLN ILE GLN SEQRES 10 B 216 PRO GLY ASN GLU GLU GLU ILE ARG THR LEU SER TYR ASN SEQRES 11 B 216 ILE SER ALA GLY GLY ILE ALA VAL VAL LEU ALA ASP GLY SEQRES 12 B 216 LEU SER PHE GLN SER GLY GLU SER LEU ARG LEU ILE ILE SEQRES 13 B 216 ARG LEU PRO GLU GLU GLU HIS THR ARG GLN ILE GLU THR SEQRES 14 B 216 GLU ALA VAL VAL ARG ARG ILE PHE ASN ASP PRO LYS SER SEQRES 15 B 216 GLU LYS ARG LYS MET THR LEU GLU TYR SER GLU ILE ALA SEQRES 16 B 216 ALA GLY ASP GLN GLN ALA LEU LEU GLN TYR CYS ILE ARG SEQRES 17 B 216 ARG GLN LEU ASN LYS ARG ARG LYS HET C2E A 301 46 HET C2E A 302 46 HET C2E B 301 46 HET C2E B 302 46 HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 3 C2E 4(C20 H24 N10 O14 P2) HELIX 1 AA1 ALA A 192 ASN A 209 1 18 HELIX 2 AA2 PRO B 90 MET B 94 5 5 HELIX 3 AA3 ALA B 192 LEU B 208 1 17 SHEET 1 AA1 5 ASN A 7 GLU A 14 0 SHEET 2 AA1 5 GLU A 17 SER A 27 -1 O ALA A 21 N LEU A 10 SHEET 3 AA1 5 GLU A 32 ASP A 40 -1 O VAL A 39 N LYS A 22 SHEET 4 AA1 5 GLN A 82 GLU A 87 -1 O LEU A 86 N LEU A 33 SHEET 5 AA1 5 ILE A 73 LYS A 78 -1 N GLY A 75 O CYS A 85 SHEET 1 AA2 3 THR A 56 VAL A 60 0 SHEET 2 AA2 3 PRO A 66 ILE A 70 -1 O TYR A 67 N PHE A 59 SHEET 3 AA2 3 LYS A 95 ARG A 96 -1 O LYS A 95 N ARG A 68 SHEET 1 AA3 7 ASP A 110 GLN A 114 0 SHEET 2 AA3 7 ILE A 121 ILE A 128 -1 O THR A 123 N VAL A 111 SHEET 3 AA3 7 GLY A 132 VAL A 136 -1 O ALA A 134 N ASN A 127 SHEET 4 AA3 7 ARG A 182 GLU A 190 -1 O MET A 184 N VAL A 135 SHEET 5 AA3 7 ARG A 162 ASN A 175 -1 N ARG A 171 O THR A 185 SHEET 6 AA3 7 SER A 148 LEU A 155 -1 N ILE A 153 O ILE A 164 SHEET 7 AA3 7 ASP A 110 GLN A 114 -1 N ASP A 110 O ARG A 154 SHEET 1 AA4 8 GLY B 75 LYS B 78 0 SHEET 2 AA4 8 LEU B 81 GLU B 87 -1 O MET B 83 N LYS B 76 SHEET 3 AA4 8 GLU B 32 ASP B 40 -1 N LEU B 33 O LEU B 86 SHEET 4 AA4 8 GLU B 17 ILE B 28 -1 N LYS B 22 O VAL B 39 SHEET 5 AA4 8 ASN B 7 GLU B 14 -1 N LEU B 10 O ALA B 21 SHEET 6 AA4 8 GLU B 54 VAL B 60 -1 O THR B 56 N GLU B 11 SHEET 7 AA4 8 PRO B 66 ARG B 72 -1 O TYR B 67 N PHE B 59 SHEET 8 AA4 8 LYS B 95 ARG B 96 -1 O LYS B 95 N ARG B 68 SHEET 1 AA5 8 ARG B 104 THR B 105 0 SHEET 2 AA5 8 ILE B 121 SER B 129 -1 O ILE B 128 N THR B 105 SHEET 3 AA5 8 GLY B 132 LEU B 137 -1 O GLY B 132 N SER B 129 SHEET 4 AA5 8 ARG B 182 ILE B 191 -1 O ARG B 182 N LEU B 137 SHEET 5 AA5 8 HIS B 160 ASN B 175 -1 N GLU B 167 O SER B 189 SHEET 6 AA5 8 SER B 148 GLU B 157 -1 N LEU B 151 O THR B 166 SHEET 7 AA5 8 ASP B 110 ILE B 113 -1 N GLN B 112 O ILE B 152 SHEET 8 AA5 8 ILE B 121 SER B 129 -1 O THR B 123 N VAL B 111 SITE 1 AC1 14 ARG A 99 ARG A 100 GLN A 101 ARG A 104 SITE 2 AC1 14 ASN A 127 GLY A 131 GLY A 132 ILE A 133 SITE 3 AC1 14 ALA A 134 ARG A 171 ARG A 172 THR A 185 SITE 4 AC1 14 GLU A 187 C2E A 302 SITE 1 AC2 8 VAL A 60 GLU A 64 GLN A 98 ARG A 99 SITE 2 AC2 8 ARG A 100 ARG A 104 ARG A 172 C2E A 301 SITE 1 AC3 13 ARG B 99 ARG B 100 GLN B 101 ARG B 104 SITE 2 AC3 13 ASN B 127 GLY B 131 GLY B 132 ILE B 133 SITE 3 AC3 13 ALA B 134 THR B 185 LEU B 186 GLU B 187 SITE 4 AC3 13 C2E B 302 SITE 1 AC4 9 VAL B 60 VAL B 65 PRO B 66 GLN B 98 SITE 2 AC4 9 ARG B 99 ARG B 100 ARG B 104 ARG B 172 SITE 3 AC4 9 C2E B 301 CRYST1 75.410 75.410 402.470 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013261 0.007656 0.000000 0.00000 SCALE2 0.000000 0.015312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002485 0.00000