HEADER VIRAL PROTEIN 23-MAY-17 5VX8 TITLE VP8* OF P[6] HUMAN ROTAVIRUS RV3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER CAPSID PROTEIN VP4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 65-223; COMPND 5 SYNONYM: ROTAVIRUS RV3 VP8*; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ROTAVIRUS A; SOURCE 3 ORGANISM_TAXID: 10941; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GLYCAN, HBGA, ROTAVIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.HU,B.V.VENKATARAM PRASAD REVDAT 3 04-OCT-23 5VX8 1 REMARK REVDAT 2 11-DEC-19 5VX8 1 REMARK REVDAT 1 18-JUL-18 5VX8 0 JRNL AUTH L.HU,B.SANKARAN,D.R.LAUCIRICA,K.PATIL,W.SALMEN, JRNL AUTH 2 A.C.M.FERREON,P.S.TSOI,Y.LASANAJAK,D.F.SMITH,S.RAMANI, JRNL AUTH 3 R.L.ATMAR,M.K.ESTES,J.C.FERREON,B.V.V.PRASAD JRNL TITL GLYCAN RECOGNITION IN GLOBALLY DOMINANT HUMAN ROTAVIRUSES. JRNL REF NAT COMMUN V. 9 2631 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29980685 JRNL DOI 10.1038/S41467-018-05098-4 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.0 REMARK 3 NUMBER OF REFLECTIONS : 18332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.4150 - 4.5726 0.84 2684 167 0.1878 0.2147 REMARK 3 2 4.5726 - 3.6321 0.83 2668 128 0.1724 0.2015 REMARK 3 3 3.6321 - 3.1737 0.85 2720 155 0.1878 0.2590 REMARK 3 4 3.1737 - 2.8839 0.86 2769 139 0.2040 0.2467 REMARK 3 5 2.8839 - 2.6774 0.87 2750 163 0.2160 0.2412 REMARK 3 6 2.6774 - 2.5196 0.86 2663 178 0.2158 0.2509 REMARK 3 7 2.5196 - 2.3935 0.87 2826 166 0.2097 0.2983 REMARK 3 8 2.3935 - 2.2894 0.86 2739 147 0.2388 0.2781 REMARK 3 9 2.2894 - 2.2013 0.77 2491 123 0.2836 0.3778 REMARK 3 10 2.2013 - 2.1254 0.86 2710 100 0.2232 0.3137 REMARK 3 11 2.1254 - 2.0589 0.85 2744 145 0.2238 0.2945 REMARK 3 12 2.0589 - 2.0001 0.66 2148 91 0.2147 0.2790 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2670 REMARK 3 ANGLE : 0.694 3642 REMARK 3 CHIRALITY : 0.048 408 REMARK 3 PLANARITY : 0.004 460 REMARK 3 DIHEDRAL : 5.051 1560 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5482 30.6188 60.8576 REMARK 3 T TENSOR REMARK 3 T11: 0.0512 T22: 0.0177 REMARK 3 T33: 0.0113 T12: 0.0335 REMARK 3 T13: -0.0093 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.0330 L22: 0.0530 REMARK 3 L33: 0.0546 L12: 0.0190 REMARK 3 L13: 0.0154 L23: -0.0361 REMARK 3 S TENSOR REMARK 3 S11: -0.0032 S12: 0.0017 S13: 0.0050 REMARK 3 S21: -0.0365 S22: -0.0094 S23: 0.0005 REMARK 3 S31: 0.0249 S32: 0.0177 S33: -0.0618 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6798 18.5718 71.3579 REMARK 3 T TENSOR REMARK 3 T11: 0.0249 T22: 0.0121 REMARK 3 T33: 0.0207 T12: 0.0077 REMARK 3 T13: 0.0067 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.1985 L22: 0.0638 REMARK 3 L33: 0.0310 L12: 0.0337 REMARK 3 L13: -0.0608 L23: -0.0047 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: -0.0592 S13: -0.0325 REMARK 3 S21: -0.0021 S22: -0.0117 S23: -0.0079 REMARK 3 S31: 0.0212 S32: 0.0280 S33: -0.0103 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8659 33.7722 69.5597 REMARK 3 T TENSOR REMARK 3 T11: -0.0130 T22: 0.0542 REMARK 3 T33: 0.0379 T12: 0.0035 REMARK 3 T13: 0.0094 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.0583 L22: 0.0106 REMARK 3 L33: 0.0056 L12: -0.0224 REMARK 3 L13: 0.0171 L23: -0.0052 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: -0.0002 S13: 0.0300 REMARK 3 S21: -0.0039 S22: 0.0074 S23: -0.0612 REMARK 3 S31: 0.0026 S32: 0.0658 S33: -0.0165 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 65 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6867 9.0291 51.4361 REMARK 3 T TENSOR REMARK 3 T11: 0.0747 T22: 0.0180 REMARK 3 T33: 0.0493 T12: -0.0273 REMARK 3 T13: 0.0298 T23: 0.0894 REMARK 3 L TENSOR REMARK 3 L11: 0.0466 L22: 0.0301 REMARK 3 L33: 0.0345 L12: -0.0045 REMARK 3 L13: 0.0168 L23: -0.0305 REMARK 3 S TENSOR REMARK 3 S11: -0.0292 S12: 0.0321 S13: 0.0171 REMARK 3 S21: 0.0243 S22: -0.0166 S23: -0.0245 REMARK 3 S31: 0.0026 S32: 0.0199 S33: -0.1288 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8284 -0.5914 44.4125 REMARK 3 T TENSOR REMARK 3 T11: 0.0295 T22: 0.0124 REMARK 3 T33: 0.0434 T12: -0.0063 REMARK 3 T13: -0.0006 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.1016 L22: 0.0580 REMARK 3 L33: 0.0194 L12: 0.0202 REMARK 3 L13: -0.0207 L23: -0.0304 REMARK 3 S TENSOR REMARK 3 S11: 0.0024 S12: 0.0217 S13: 0.0103 REMARK 3 S21: 0.0334 S22: 0.0048 S23: 0.0018 REMARK 3 S31: -0.0098 S32: 0.0030 S33: -0.0031 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 130 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2874 -8.8534 34.4944 REMARK 3 T TENSOR REMARK 3 T11: 0.0672 T22: 0.1141 REMARK 3 T33: 0.0363 T12: -0.0146 REMARK 3 T13: -0.0232 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 0.0139 L22: 0.0021 REMARK 3 L33: 0.0082 L12: -0.0016 REMARK 3 L13: 0.0065 L23: -0.0026 REMARK 3 S TENSOR REMARK 3 S11: 0.0413 S12: 0.0733 S13: -0.0389 REMARK 3 S21: -0.0458 S22: -0.0008 S23: 0.0250 REMARK 3 S31: 0.0680 S32: 0.0068 S33: -0.0003 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 131 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6902 -3.7667 32.5878 REMARK 3 T TENSOR REMARK 3 T11: 0.0777 T22: 0.0752 REMARK 3 T33: 0.0441 T12: 0.0064 REMARK 3 T13: -0.0047 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.1466 L22: 0.1413 REMARK 3 L33: 0.1524 L12: 0.1158 REMARK 3 L13: 0.0935 L23: 0.0300 REMARK 3 S TENSOR REMARK 3 S11: -0.0696 S12: 0.1013 S13: 0.0016 REMARK 3 S21: -0.0937 S22: 0.0265 S23: 0.0049 REMARK 3 S31: -0.0481 S32: 0.0551 S33: -0.0144 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9572 -10.1413 40.6193 REMARK 3 T TENSOR REMARK 3 T11: 0.0771 T22: 0.0378 REMARK 3 T33: 0.0397 T12: -0.0502 REMARK 3 T13: 0.0123 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.0250 L22: 0.0426 REMARK 3 L33: 0.0347 L12: 0.0340 REMARK 3 L13: 0.0303 L23: 0.0379 REMARK 3 S TENSOR REMARK 3 S11: -0.0428 S12: 0.0256 S13: 0.0180 REMARK 3 S21: -0.0377 S22: 0.0011 S23: 0.0328 REMARK 3 S31: -0.0192 S32: -0.0149 S33: -0.0678 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 160 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7191 4.9422 42.1733 REMARK 3 T TENSOR REMARK 3 T11: 0.0546 T22: 0.0633 REMARK 3 T33: 0.0753 T12: 0.0043 REMARK 3 T13: 0.0181 T23: 0.0405 REMARK 3 L TENSOR REMARK 3 L11: 0.0327 L22: 0.1482 REMARK 3 L33: 0.1048 L12: 0.0693 REMARK 3 L13: 0.0587 L23: 0.1246 REMARK 3 S TENSOR REMARK 3 S11: -0.0014 S12: 0.0162 S13: 0.0212 REMARK 3 S21: 0.0431 S22: -0.0664 S23: 0.0630 REMARK 3 S31: -0.0093 S32: -0.0324 S33: -0.0430 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 170 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6403 -0.3941 46.0083 REMARK 3 T TENSOR REMARK 3 T11: 0.0448 T22: 0.0767 REMARK 3 T33: 0.0461 T12: -0.0243 REMARK 3 T13: 0.0091 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.0072 L22: 0.0385 REMARK 3 L33: 0.2540 L12: -0.0078 REMARK 3 L13: -0.0142 L23: 0.0826 REMARK 3 S TENSOR REMARK 3 S11: -0.0162 S12: 0.0227 S13: 0.0041 REMARK 3 S21: 0.0471 S22: -0.0596 S23: 0.0160 REMARK 3 S31: -0.0433 S32: -0.0904 S33: -0.0608 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3347 12.1929 42.7122 REMARK 3 T TENSOR REMARK 3 T11: 0.0393 T22: 0.0446 REMARK 3 T33: 0.1309 T12: 0.0232 REMARK 3 T13: -0.0163 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.0952 L22: 0.0226 REMARK 3 L33: 0.1189 L12: 0.0354 REMARK 3 L13: 0.0219 L23: -0.0015 REMARK 3 S TENSOR REMARK 3 S11: -0.0188 S12: -0.0022 S13: 0.0378 REMARK 3 S21: 0.0183 S22: 0.0604 S23: 0.0888 REMARK 3 S31: -0.0434 S32: -0.0324 S33: 0.0228 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VX8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000228097. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.0.9 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33614 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 27.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.10200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: PDB ENTRY 2AEN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M AMMONIUM SULFATE, 0.1 M TRIS, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 63 REMARK 465 SER A 64 REMARK 465 GLY B 63 REMARK 465 SER B 64 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1185 O HOH A 1254 1.88 REMARK 500 O HOH A 1102 O HOH A 1124 1.91 REMARK 500 O HOH B 1195 O HOH B 1226 1.92 REMARK 500 O HOH B 1248 O HOH B 1265 1.99 REMARK 500 O HOH A 1130 O HOH A 1159 2.00 REMARK 500 O HOH A 1172 O HOH A 1225 2.04 REMARK 500 O HOH A 1146 O HOH A 1229 2.04 REMARK 500 O HOH A 1220 O HOH A 1258 2.05 REMARK 500 O HOH A 1256 O HOH B 1196 2.05 REMARK 500 O HOH A 1181 O HOH A 1183 2.05 REMARK 500 OG1 THR B 72 O HOH B 1101 2.06 REMARK 500 O HOH A 1169 O HOH A 1230 2.06 REMARK 500 O HOH B 1102 O HOH B 1204 2.10 REMARK 500 O HOH A 1273 O HOH A 1276 2.11 REMARK 500 O HOH A 1245 O HOH A 1266 2.11 REMARK 500 O HOH B 1213 O HOH B 1247 2.13 REMARK 500 OG SER B 213 O HOH B 1102 2.18 REMARK 500 OG1 THR A 72 O HOH A 1101 2.18 REMARK 500 O HOH B 1177 O HOH B 1180 2.19 REMARK 500 OE1 GLU B 150 O HOH B 1103 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 1229 O HOH B 1257 1455 1.90 REMARK 500 O HOH A 1241 O HOH B 1236 1666 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 181 31.66 -90.90 REMARK 500 GLN B 90 169.54 178.88 REMARK 500 ASN B 114 52.93 31.90 REMARK 500 PRO B 181 30.79 -90.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1279 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A1280 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A1281 DISTANCE = 7.52 ANGSTROMS REMARK 525 HOH B1271 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH B1272 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH B1273 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH B1274 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH B1275 DISTANCE = 8.32 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1000 DBREF 5VX8 A 65 223 UNP D7F7M7 D7F7M7_9REOV 65 223 DBREF 5VX8 B 65 223 UNP D7F7M7 D7F7M7_9REOV 65 223 SEQADV 5VX8 GLY A 63 UNP D7F7M7 EXPRESSION TAG SEQADV 5VX8 SER A 64 UNP D7F7M7 EXPRESSION TAG SEQADV 5VX8 GLY B 63 UNP D7F7M7 EXPRESSION TAG SEQADV 5VX8 SER B 64 UNP D7F7M7 EXPRESSION TAG SEQRES 1 A 161 GLY SER LEU ASP GLY PRO TYR GLN SER THR SER PHE LYS SEQRES 2 A 161 PRO PRO SER ASP TYR TRP ILE LEU LEU ASN PRO THR ASN SEQRES 3 A 161 GLN GLN VAL VAL LEU GLU GLY THR ASN LYS THR ASP ILE SEQRES 4 A 161 TRP VAL ALA LEU LEU LEU VAL GLU PRO ASN VAL THR ASN SEQRES 5 A 161 GLN SER ARG GLN TYR THR LEU PHE GLY GLU THR LYS GLN SEQRES 6 A 161 ILE THR VAL GLU ASN ASN THR ASN LYS TRP LYS PHE PHE SEQRES 7 A 161 GLU MET PHE ARG SER SER VAL SER ALA GLU PHE GLN HIS SEQRES 8 A 161 LYS ARG THR LEU THR SER ASP THR LYS LEU ALA GLY PHE SEQRES 9 A 161 LEU LYS HIS TYR ASN SER VAL TRP THR PHE HIS GLY GLU SEQRES 10 A 161 THR PRO HIS ALA THR THR ASP TYR SER SER THR SER ASN SEQRES 11 A 161 LEU SER GLU VAL GLU THR THR ILE HIS VAL GLU PHE TYR SEQRES 12 A 161 ILE ILE PRO ARG SER GLN GLU SER LYS CYS VAL GLU TYR SEQRES 13 A 161 ILE ASN THR GLY LEU SEQRES 1 B 161 GLY SER LEU ASP GLY PRO TYR GLN SER THR SER PHE LYS SEQRES 2 B 161 PRO PRO SER ASP TYR TRP ILE LEU LEU ASN PRO THR ASN SEQRES 3 B 161 GLN GLN VAL VAL LEU GLU GLY THR ASN LYS THR ASP ILE SEQRES 4 B 161 TRP VAL ALA LEU LEU LEU VAL GLU PRO ASN VAL THR ASN SEQRES 5 B 161 GLN SER ARG GLN TYR THR LEU PHE GLY GLU THR LYS GLN SEQRES 6 B 161 ILE THR VAL GLU ASN ASN THR ASN LYS TRP LYS PHE PHE SEQRES 7 B 161 GLU MET PHE ARG SER SER VAL SER ALA GLU PHE GLN HIS SEQRES 8 B 161 LYS ARG THR LEU THR SER ASP THR LYS LEU ALA GLY PHE SEQRES 9 B 161 LEU LYS HIS TYR ASN SER VAL TRP THR PHE HIS GLY GLU SEQRES 10 B 161 THR PRO HIS ALA THR THR ASP TYR SER SER THR SER ASN SEQRES 11 B 161 LEU SER GLU VAL GLU THR THR ILE HIS VAL GLU PHE TYR SEQRES 12 B 161 ILE ILE PRO ARG SER GLN GLU SER LYS CYS VAL GLU TYR SEQRES 13 B 161 ILE ASN THR GLY LEU HET SO4 A1000 5 HET SO4 B1000 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *356(H2 O) HELIX 1 AA1 GLN A 211 GLY A 222 1 12 HELIX 2 AA2 GLN B 211 GLY B 222 1 12 SHEET 1 AA111 ASP A 66 TYR A 69 0 SHEET 2 AA111 PHE A 204 PRO A 208 -1 O PHE A 204 N TYR A 69 SHEET 3 AA111 TYR A 80 LEU A 84 -1 N TRP A 81 O ILE A 207 SHEET 4 AA111 ALA A 164 HIS A 169 -1 O PHE A 166 N ILE A 82 SHEET 5 AA111 SER A 172 GLU A 179 -1 O TRP A 174 N LEU A 167 SHEET 6 AA111 GLN A 152 SER A 159 1 N THR A 158 O GLY A 178 SHEET 7 AA111 TRP A 137 ARG A 144 -1 N TRP A 137 O SER A 159 SHEET 8 AA111 TRP A 102 VAL A 108 -1 N LEU A 106 O PHE A 140 SHEET 9 AA111 GLN A 90 THR A 96 -1 N GLN A 90 O LEU A 107 SHEET 10 AA111 GLU A 197 ILE A 200 -1 O GLU A 197 N THR A 96 SHEET 11 AA111 THR A 72 PHE A 74 -1 N PHE A 74 O THR A 198 SHEET 1 AA2 6 ASP A 66 TYR A 69 0 SHEET 2 AA2 6 PHE A 204 PRO A 208 -1 O PHE A 204 N TYR A 69 SHEET 3 AA2 6 TYR A 80 LEU A 84 -1 N TRP A 81 O ILE A 207 SHEET 4 AA2 6 ALA A 164 HIS A 169 -1 O PHE A 166 N ILE A 82 SHEET 5 AA2 6 SER A 172 GLU A 179 -1 O TRP A 174 N LEU A 167 SHEET 6 AA2 6 THR A 184 SER A 189 -1 O THR A 184 N HIS A 177 SHEET 1 AA3 2 VAL A 112 LEU A 121 0 SHEET 2 AA3 2 GLU A 124 ASN A 132 -1 O ASN A 132 N VAL A 112 SHEET 1 AA411 ASP B 66 TYR B 69 0 SHEET 2 AA411 PHE B 204 PRO B 208 -1 O PHE B 204 N TYR B 69 SHEET 3 AA411 TYR B 80 LEU B 84 -1 N TRP B 81 O ILE B 207 SHEET 4 AA411 ALA B 164 HIS B 169 -1 O PHE B 166 N ILE B 82 SHEET 5 AA411 SER B 172 GLU B 179 -1 O TRP B 174 N LEU B 167 SHEET 6 AA411 GLN B 152 SER B 159 1 N THR B 158 O GLY B 178 SHEET 7 AA411 TRP B 137 ARG B 144 -1 N TRP B 137 O SER B 159 SHEET 8 AA411 TRP B 102 VAL B 108 -1 N LEU B 106 O PHE B 140 SHEET 9 AA411 VAL B 91 THR B 96 -1 N GLY B 95 O VAL B 103 SHEET 10 AA411 GLU B 197 ILE B 200 -1 O GLU B 197 N THR B 96 SHEET 11 AA411 THR B 72 PHE B 74 -1 N PHE B 74 O THR B 198 SHEET 1 AA5 6 ASP B 66 TYR B 69 0 SHEET 2 AA5 6 PHE B 204 PRO B 208 -1 O PHE B 204 N TYR B 69 SHEET 3 AA5 6 TYR B 80 LEU B 84 -1 N TRP B 81 O ILE B 207 SHEET 4 AA5 6 ALA B 164 HIS B 169 -1 O PHE B 166 N ILE B 82 SHEET 5 AA5 6 SER B 172 GLU B 179 -1 O TRP B 174 N LEU B 167 SHEET 6 AA5 6 THR B 184 SER B 189 -1 O THR B 184 N HIS B 177 SHEET 1 AA6 2 VAL B 112 LEU B 121 0 SHEET 2 AA6 2 GLU B 124 ASN B 132 -1 O LYS B 126 N TYR B 119 CISPEP 1 THR A 180 PRO A 181 0 2.07 CISPEP 2 THR B 180 PRO B 181 0 2.22 SITE 1 AC1 10 PRO A 86 THR A 87 ASN A 88 GLN A 90 SITE 2 AC1 10 VAL A 202 HOH A1116 HOH A1121 HOH A1135 SITE 3 AC1 10 HOH A1196 HOH A1204 SITE 1 AC2 7 PRO B 86 THR B 87 ASN B 88 GLN B 90 SITE 2 AC2 7 VAL B 202 HOH B1109 HOH B1174 CRYST1 27.790 43.100 65.740 94.86 99.40 90.22 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035984 0.000138 0.005992 0.00000 SCALE2 0.000000 0.023202 0.002015 0.00000 SCALE3 0.000000 0.000000 0.015476 0.00000