data_5VX9 # _entry.id 5VX9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5VX9 WWPDB D_1000228099 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5VX9 _pdbx_database_status.recvd_initial_deposition_date 2017-05-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hu, L.' 1 ? 'Venkataram Prasad, B.V.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 9 _citation.language ? _citation.page_first 2631 _citation.page_last 2631 _citation.title 'Glycan recognition in globally dominant human rotaviruses.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-018-05098-4 _citation.pdbx_database_id_PubMed 29980685 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hu, L.' 1 ? primary 'Sankaran, B.' 2 ? primary 'Laucirica, D.R.' 3 ? primary 'Patil, K.' 4 ? primary 'Salmen, W.' 5 ? primary 'Ferreon, A.C.M.' 6 ? primary 'Tsoi, P.S.' 7 ? primary 'Lasanajak, Y.' 8 ? primary 'Smith, D.F.' 9 ? primary 'Ramani, S.' 10 ? primary 'Atmar, R.L.' 11 ? primary 'Estes, M.K.' 12 ? primary 'Ferreon, J.C.' 13 ? primary 'Prasad, B.V.V.' 14 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5VX9 _cell.details ? _cell.formula_units_Z ? _cell.length_a 36.510 _cell.length_a_esd ? _cell.length_b 42.630 _cell.length_b_esd ? _cell.length_c 95.070 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Outer capsid protein VP4' 18483.477 1 ? ? 'UNP residues 65-223' ? 2 branched man ;alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose ; 853.771 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 4 water nat water 18.015 194 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Rotavirus RV3 VP8*' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSLDGPYQSTSFKPPSDYWILLNPTNQQVVLEGTNKTDIWVALLLVEPNVTNQSRQYTLFGETKQITVENNTNKWKFFEM FRSSVSAEFQHKRTLTSDTKLAGFLKHYNSVWTFHGETPHATTDYSSTSNLSEVETTIHVEFYIIPRSQESKCVEYINTG L ; _entity_poly.pdbx_seq_one_letter_code_can ;GSLDGPYQSTSFKPPSDYWILLNPTNQQVVLEGTNKTDIWVALLLVEPNVTNQSRQYTLFGETKQITVENNTNKWKFFEM FRSSVSAEFQHKRTLTSDTKLAGFLKHYNSVWTFHGETPHATTDYSSTSNLSEVETTIHVEFYIIPRSQESKCVEYINTG L ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 LEU n 1 4 ASP n 1 5 GLY n 1 6 PRO n 1 7 TYR n 1 8 GLN n 1 9 SER n 1 10 THR n 1 11 SER n 1 12 PHE n 1 13 LYS n 1 14 PRO n 1 15 PRO n 1 16 SER n 1 17 ASP n 1 18 TYR n 1 19 TRP n 1 20 ILE n 1 21 LEU n 1 22 LEU n 1 23 ASN n 1 24 PRO n 1 25 THR n 1 26 ASN n 1 27 GLN n 1 28 GLN n 1 29 VAL n 1 30 VAL n 1 31 LEU n 1 32 GLU n 1 33 GLY n 1 34 THR n 1 35 ASN n 1 36 LYS n 1 37 THR n 1 38 ASP n 1 39 ILE n 1 40 TRP n 1 41 VAL n 1 42 ALA n 1 43 LEU n 1 44 LEU n 1 45 LEU n 1 46 VAL n 1 47 GLU n 1 48 PRO n 1 49 ASN n 1 50 VAL n 1 51 THR n 1 52 ASN n 1 53 GLN n 1 54 SER n 1 55 ARG n 1 56 GLN n 1 57 TYR n 1 58 THR n 1 59 LEU n 1 60 PHE n 1 61 GLY n 1 62 GLU n 1 63 THR n 1 64 LYS n 1 65 GLN n 1 66 ILE n 1 67 THR n 1 68 VAL n 1 69 GLU n 1 70 ASN n 1 71 ASN n 1 72 THR n 1 73 ASN n 1 74 LYS n 1 75 TRP n 1 76 LYS n 1 77 PHE n 1 78 PHE n 1 79 GLU n 1 80 MET n 1 81 PHE n 1 82 ARG n 1 83 SER n 1 84 SER n 1 85 VAL n 1 86 SER n 1 87 ALA n 1 88 GLU n 1 89 PHE n 1 90 GLN n 1 91 HIS n 1 92 LYS n 1 93 ARG n 1 94 THR n 1 95 LEU n 1 96 THR n 1 97 SER n 1 98 ASP n 1 99 THR n 1 100 LYS n 1 101 LEU n 1 102 ALA n 1 103 GLY n 1 104 PHE n 1 105 LEU n 1 106 LYS n 1 107 HIS n 1 108 TYR n 1 109 ASN n 1 110 SER n 1 111 VAL n 1 112 TRP n 1 113 THR n 1 114 PHE n 1 115 HIS n 1 116 GLY n 1 117 GLU n 1 118 THR n 1 119 PRO n 1 120 HIS n 1 121 ALA n 1 122 THR n 1 123 THR n 1 124 ASP n 1 125 TYR n 1 126 SER n 1 127 SER n 1 128 THR n 1 129 SER n 1 130 ASN n 1 131 LEU n 1 132 SER n 1 133 GLU n 1 134 VAL n 1 135 GLU n 1 136 THR n 1 137 THR n 1 138 ILE n 1 139 HIS n 1 140 VAL n 1 141 GLU n 1 142 PHE n 1 143 TYR n 1 144 ILE n 1 145 ILE n 1 146 PRO n 1 147 ARG n 1 148 SER n 1 149 GLN n 1 150 GLU n 1 151 SER n 1 152 LYS n 1 153 CYS n 1 154 VAL n 1 155 GLU n 1 156 TYR n 1 157 ILE n 1 158 ASN n 1 159 THR n 1 160 GLY n 1 161 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 161 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human rotavirus A' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10941 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code D7F7M7_9REOV _struct_ref.pdbx_db_accession D7F7M7 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LDGPYQSTSFKPPSDYWILLNPTNQQVVLEGTNKTDIWVALLLVEPNVTNQSRQYTLFGETKQITVENNTNKWKFFEMFR SSVSAEFQHKRTLTSDTKLAGFLKHYNSVWTFHGETPHATTDYSSTSNLSEVETTIHVEFYIIPRSQESKCVEYINTGL ; _struct_ref.pdbx_align_begin 65 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5VX9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 161 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession D7F7M7 _struct_ref_seq.db_align_beg 65 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 223 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 65 _struct_ref_seq.pdbx_auth_seq_align_end 223 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5VX9 GLY A 1 ? UNP D7F7M7 ? ? 'expression tag' 63 1 1 5VX9 SER A 2 ? UNP D7F7M7 ? ? 'expression tag' 64 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BGC 'D-saccharide, beta linking' . beta-D-glucopyranose ? 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose ? 'C6 H12 O5' 164.156 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5VX9 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.00 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 38.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '2.0 M ammonium sulfate, 0.1 M Tris, pH 8.5' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-12-12 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 17-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5VX9 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.822 _reflns.d_resolution_low 31.74 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13693 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 1.9 _reflns.pdbx_Rmerge_I_obs 0.091 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.62 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.046 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.993 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.822 _reflns_shell.d_res_low ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.183 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.091 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.962 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5VX9 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.822 _refine.ls_d_res_low 31.74 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13692 _refine.ls_number_reflns_R_free 684 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.05 _refine.ls_percent_reflns_R_free 4.88 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1459 _refine.ls_R_factor_R_free 0.1994 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1432 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.19 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 2AEN' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 16.99 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.18 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1306 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 68 _refine_hist.number_atoms_solvent 194 _refine_hist.number_atoms_total 1568 _refine_hist.d_res_high 1.822 _refine_hist.d_res_low 31.74 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 1420 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.094 ? 1945 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 13.077 ? 610 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.052 ? 231 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 235 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.8220 1.8950 . . 130 2660 98.00 . . . 0.2318 . 0.1600 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8950 1.9812 . . 178 2613 98.00 . . . 0.2845 . 0.1524 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9812 2.0857 . . 144 2640 98.00 . . . 0.2177 . 0.1459 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0857 2.2163 . . 139 2669 99.00 . . . 0.2020 . 0.1377 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2163 2.3874 . . 117 2650 98.00 . . . 0.2112 . 0.1455 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3874 2.6276 . . 133 2636 97.00 . . . 0.2175 . 0.1523 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6276 3.0076 . . 138 2682 99.00 . . . 0.1945 . 0.1543 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0076 3.7884 . . 119 2659 98.00 . . . 0.2013 . 0.1330 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.7884 34.0890 . . 128 2669 98.00 . . . 0.1397 . 0.1336 . . . . . . . . . . # _struct.entry_id 5VX9 _struct.title 'VP8* of P[6] Human Rotavirus RV3 in complex with LNFP1' _struct.pdbx_descriptor 'Outer capsid protein VP4' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5VX9 _struct_keywords.text 'Glycan, HBGA, rotavirus, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASN A 130 ? VAL A 134 ? ASN A 192 VAL A 196 5 ? 5 HELX_P HELX_P2 AA2 GLN A 149 ? GLY A 160 ? GLN A 211 GLY A 222 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? B BGC . O4 ? ? ? 1_555 B GAL . C1 ? ? B BGC 1 B GAL 2 1_555 ? ? ? ? ? ? ? 1.420 ? ? covale2 covale one ? B GAL . O3 ? ? ? 1_555 B NAG . C1 ? ? B GAL 2 B NAG 3 1_555 ? ? ? ? ? ? ? 1.411 ? ? covale3 covale one ? B NAG . O3 ? ? ? 1_555 B GAL . C1 ? ? B NAG 3 B GAL 4 1_555 ? ? ? ? ? ? ? 1.432 ? ? covale4 covale one ? B GAL . O2 ? ? ? 1_555 B FUC . C1 ? ? B GAL 4 B FUC 5 1_555 ? ? ? ? ? ? ? 1.436 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 5 A . ? GLY 67 A PRO 6 A ? PRO 68 A 1 6.27 2 THR 118 A . ? THR 180 A PRO 119 A ? PRO 181 A 1 3.52 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 11 ? AA2 ? 6 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA1 8 9 ? anti-parallel AA1 9 10 ? anti-parallel AA1 10 11 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASP A 4 ? TYR A 7 ? ASP A 66 TYR A 69 AA1 2 GLU A 141 ? PRO A 146 ? GLU A 203 PRO A 208 AA1 3 TYR A 18 ? ASN A 23 ? TYR A 80 ASN A 85 AA1 4 ALA A 102 ? HIS A 107 ? ALA A 164 HIS A 169 AA1 5 SER A 110 ? GLU A 117 ? SER A 172 GLU A 179 AA1 6 GLN A 90 ? SER A 97 ? GLN A 152 SER A 159 AA1 7 TRP A 75 ? ARG A 82 ? TRP A 137 ARG A 144 AA1 8 TRP A 40 ? VAL A 46 ? TRP A 102 VAL A 108 AA1 9 VAL A 29 ? THR A 34 ? VAL A 91 THR A 96 AA1 10 GLU A 135 ? ILE A 138 ? GLU A 197 ILE A 200 AA1 11 THR A 10 ? PHE A 12 ? THR A 72 PHE A 74 AA2 1 ASP A 4 ? TYR A 7 ? ASP A 66 TYR A 69 AA2 2 GLU A 141 ? PRO A 146 ? GLU A 203 PRO A 208 AA2 3 TYR A 18 ? ASN A 23 ? TYR A 80 ASN A 85 AA2 4 ALA A 102 ? HIS A 107 ? ALA A 164 HIS A 169 AA2 5 SER A 110 ? GLU A 117 ? SER A 172 GLU A 179 AA2 6 THR A 122 ? SER A 127 ? THR A 184 SER A 189 AA3 1 VAL A 50 ? LEU A 59 ? VAL A 112 LEU A 121 AA3 2 GLU A 62 ? ASN A 70 ? GLU A 124 ASN A 132 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N TYR A 7 ? N TYR A 69 O PHE A 142 ? O PHE A 204 AA1 2 3 O ILE A 145 ? O ILE A 207 N TRP A 19 ? N TRP A 81 AA1 3 4 N LEU A 22 ? N LEU A 84 O ALA A 102 ? O ALA A 164 AA1 4 5 N LEU A 105 ? N LEU A 167 O TRP A 112 ? O TRP A 174 AA1 5 6 O GLY A 116 ? O GLY A 178 N THR A 96 ? N THR A 158 AA1 6 7 O SER A 97 ? O SER A 159 N TRP A 75 ? N TRP A 137 AA1 7 8 O MET A 80 ? O MET A 142 N ALA A 42 ? N ALA A 104 AA1 8 9 O VAL A 41 ? O VAL A 103 N GLY A 33 ? N GLY A 95 AA1 9 10 N GLU A 32 ? N GLU A 94 O THR A 137 ? O THR A 199 AA1 10 11 O ILE A 138 ? O ILE A 200 N THR A 10 ? N THR A 72 AA2 1 2 N TYR A 7 ? N TYR A 69 O PHE A 142 ? O PHE A 204 AA2 2 3 O ILE A 145 ? O ILE A 207 N TRP A 19 ? N TRP A 81 AA2 3 4 N LEU A 22 ? N LEU A 84 O ALA A 102 ? O ALA A 164 AA2 4 5 N LEU A 105 ? N LEU A 167 O TRP A 112 ? O TRP A 174 AA2 5 6 N HIS A 115 ? N HIS A 177 O THR A 122 ? O THR A 184 AA3 1 2 N TYR A 57 ? N TYR A 119 O LYS A 64 ? O LYS A 126 # _atom_sites.entry_id 5VX9 _atom_sites.fract_transf_matrix[1][1] 0.027390 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023458 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010519 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 63 63 GLY GLY A . n A 1 2 SER 2 64 64 SER SER A . n A 1 3 LEU 3 65 65 LEU LEU A . n A 1 4 ASP 4 66 66 ASP ASP A . n A 1 5 GLY 5 67 67 GLY GLY A . n A 1 6 PRO 6 68 68 PRO PRO A . n A 1 7 TYR 7 69 69 TYR TYR A . n A 1 8 GLN 8 70 70 GLN GLN A . n A 1 9 SER 9 71 71 SER SER A . n A 1 10 THR 10 72 72 THR THR A . n A 1 11 SER 11 73 73 SER SER A . n A 1 12 PHE 12 74 74 PHE PHE A . n A 1 13 LYS 13 75 75 LYS LYS A . n A 1 14 PRO 14 76 76 PRO PRO A . n A 1 15 PRO 15 77 77 PRO PRO A . n A 1 16 SER 16 78 78 SER SER A . n A 1 17 ASP 17 79 79 ASP ASP A . n A 1 18 TYR 18 80 80 TYR TYR A . n A 1 19 TRP 19 81 81 TRP TRP A . n A 1 20 ILE 20 82 82 ILE ILE A . n A 1 21 LEU 21 83 83 LEU LEU A . n A 1 22 LEU 22 84 84 LEU LEU A . n A 1 23 ASN 23 85 85 ASN ASN A . n A 1 24 PRO 24 86 86 PRO PRO A . n A 1 25 THR 25 87 87 THR THR A . n A 1 26 ASN 26 88 88 ASN ASN A . n A 1 27 GLN 27 89 89 GLN GLN A . n A 1 28 GLN 28 90 90 GLN GLN A . n A 1 29 VAL 29 91 91 VAL VAL A . n A 1 30 VAL 30 92 92 VAL VAL A . n A 1 31 LEU 31 93 93 LEU LEU A . n A 1 32 GLU 32 94 94 GLU GLU A . n A 1 33 GLY 33 95 95 GLY GLY A . n A 1 34 THR 34 96 96 THR THR A . n A 1 35 ASN 35 97 97 ASN ASN A . n A 1 36 LYS 36 98 98 LYS LYS A . n A 1 37 THR 37 99 99 THR THR A . n A 1 38 ASP 38 100 100 ASP ASP A . n A 1 39 ILE 39 101 101 ILE ILE A . n A 1 40 TRP 40 102 102 TRP TRP A . n A 1 41 VAL 41 103 103 VAL VAL A . n A 1 42 ALA 42 104 104 ALA ALA A . n A 1 43 LEU 43 105 105 LEU LEU A . n A 1 44 LEU 44 106 106 LEU LEU A . n A 1 45 LEU 45 107 107 LEU LEU A . n A 1 46 VAL 46 108 108 VAL VAL A . n A 1 47 GLU 47 109 109 GLU GLU A . n A 1 48 PRO 48 110 110 PRO PRO A . n A 1 49 ASN 49 111 111 ASN ASN A . n A 1 50 VAL 50 112 112 VAL VAL A . n A 1 51 THR 51 113 113 THR THR A . n A 1 52 ASN 52 114 114 ASN ASN A . n A 1 53 GLN 53 115 115 GLN GLN A . n A 1 54 SER 54 116 116 SER SER A . n A 1 55 ARG 55 117 117 ARG ARG A . n A 1 56 GLN 56 118 118 GLN GLN A . n A 1 57 TYR 57 119 119 TYR TYR A . n A 1 58 THR 58 120 120 THR THR A . n A 1 59 LEU 59 121 121 LEU LEU A . n A 1 60 PHE 60 122 122 PHE PHE A . n A 1 61 GLY 61 123 123 GLY GLY A . n A 1 62 GLU 62 124 124 GLU GLU A . n A 1 63 THR 63 125 125 THR THR A . n A 1 64 LYS 64 126 126 LYS LYS A . n A 1 65 GLN 65 127 127 GLN GLN A . n A 1 66 ILE 66 128 128 ILE ILE A . n A 1 67 THR 67 129 129 THR THR A . n A 1 68 VAL 68 130 130 VAL VAL A . n A 1 69 GLU 69 131 131 GLU GLU A . n A 1 70 ASN 70 132 132 ASN ASN A . n A 1 71 ASN 71 133 133 ASN ASN A . n A 1 72 THR 72 134 134 THR THR A . n A 1 73 ASN 73 135 135 ASN ASN A . n A 1 74 LYS 74 136 136 LYS LYS A . n A 1 75 TRP 75 137 137 TRP TRP A . n A 1 76 LYS 76 138 138 LYS LYS A . n A 1 77 PHE 77 139 139 PHE PHE A . n A 1 78 PHE 78 140 140 PHE PHE A . n A 1 79 GLU 79 141 141 GLU GLU A . n A 1 80 MET 80 142 142 MET MET A . n A 1 81 PHE 81 143 143 PHE PHE A . n A 1 82 ARG 82 144 144 ARG ARG A . n A 1 83 SER 83 145 145 SER SER A . n A 1 84 SER 84 146 146 SER SER A . n A 1 85 VAL 85 147 147 VAL VAL A . n A 1 86 SER 86 148 148 SER SER A . n A 1 87 ALA 87 149 149 ALA ALA A . n A 1 88 GLU 88 150 150 GLU GLU A . n A 1 89 PHE 89 151 151 PHE PHE A . n A 1 90 GLN 90 152 152 GLN GLN A . n A 1 91 HIS 91 153 153 HIS HIS A . n A 1 92 LYS 92 154 154 LYS LYS A . n A 1 93 ARG 93 155 155 ARG ARG A . n A 1 94 THR 94 156 156 THR THR A . n A 1 95 LEU 95 157 157 LEU LEU A . n A 1 96 THR 96 158 158 THR THR A . n A 1 97 SER 97 159 159 SER SER A . n A 1 98 ASP 98 160 160 ASP ASP A . n A 1 99 THR 99 161 161 THR THR A . n A 1 100 LYS 100 162 162 LYS LYS A . n A 1 101 LEU 101 163 163 LEU LEU A . n A 1 102 ALA 102 164 164 ALA ALA A . n A 1 103 GLY 103 165 165 GLY GLY A . n A 1 104 PHE 104 166 166 PHE PHE A . n A 1 105 LEU 105 167 167 LEU LEU A . n A 1 106 LYS 106 168 168 LYS LYS A . n A 1 107 HIS 107 169 169 HIS HIS A . n A 1 108 TYR 108 170 170 TYR TYR A . n A 1 109 ASN 109 171 171 ASN ASN A . n A 1 110 SER 110 172 172 SER SER A . n A 1 111 VAL 111 173 173 VAL VAL A . n A 1 112 TRP 112 174 174 TRP TRP A . n A 1 113 THR 113 175 175 THR THR A . n A 1 114 PHE 114 176 176 PHE PHE A . n A 1 115 HIS 115 177 177 HIS HIS A . n A 1 116 GLY 116 178 178 GLY GLY A . n A 1 117 GLU 117 179 179 GLU GLU A . n A 1 118 THR 118 180 180 THR THR A . n A 1 119 PRO 119 181 181 PRO PRO A . n A 1 120 HIS 120 182 182 HIS HIS A . n A 1 121 ALA 121 183 183 ALA ALA A . n A 1 122 THR 122 184 184 THR THR A . n A 1 123 THR 123 185 185 THR THR A . n A 1 124 ASP 124 186 186 ASP ASP A . n A 1 125 TYR 125 187 187 TYR TYR A . n A 1 126 SER 126 188 188 SER SER A . n A 1 127 SER 127 189 189 SER SER A . n A 1 128 THR 128 190 190 THR THR A . n A 1 129 SER 129 191 191 SER SER A . n A 1 130 ASN 130 192 192 ASN ASN A . n A 1 131 LEU 131 193 193 LEU LEU A . n A 1 132 SER 132 194 194 SER SER A . n A 1 133 GLU 133 195 195 GLU GLU A . n A 1 134 VAL 134 196 196 VAL VAL A . n A 1 135 GLU 135 197 197 GLU GLU A . n A 1 136 THR 136 198 198 THR THR A . n A 1 137 THR 137 199 199 THR THR A . n A 1 138 ILE 138 200 200 ILE ILE A . n A 1 139 HIS 139 201 201 HIS HIS A . n A 1 140 VAL 140 202 202 VAL VAL A . n A 1 141 GLU 141 203 203 GLU GLU A . n A 1 142 PHE 142 204 204 PHE PHE A . n A 1 143 TYR 143 205 205 TYR TYR A . n A 1 144 ILE 144 206 206 ILE ILE A . n A 1 145 ILE 145 207 207 ILE ILE A . n A 1 146 PRO 146 208 208 PRO PRO A . n A 1 147 ARG 147 209 209 ARG ARG A . n A 1 148 SER 148 210 210 SER SER A . n A 1 149 GLN 149 211 211 GLN GLN A . n A 1 150 GLU 150 212 212 GLU GLU A . n A 1 151 SER 151 213 213 SER SER A . n A 1 152 LYS 152 214 214 LYS LYS A . n A 1 153 CYS 153 215 215 CYS CYS A . n A 1 154 VAL 154 216 216 VAL VAL A . n A 1 155 GLU 155 217 217 GLU GLU A . n A 1 156 TYR 156 218 218 TYR TYR A . n A 1 157 ILE 157 219 219 ILE ILE A . n A 1 158 ASN 158 220 220 ASN ASN A . n A 1 159 THR 159 221 221 THR THR A . n A 1 160 GLY 160 222 222 GLY GLY A . n A 1 161 LEU 161 223 223 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 1 306 1 SO4 SO4 A . D 3 SO4 1 307 2 SO4 SO4 A . E 4 HOH 1 401 142 HOH HOH A . E 4 HOH 2 402 61 HOH HOH A . E 4 HOH 3 403 166 HOH HOH A . E 4 HOH 4 404 164 HOH HOH A . E 4 HOH 5 405 77 HOH HOH A . E 4 HOH 6 406 143 HOH HOH A . E 4 HOH 7 407 133 HOH HOH A . E 4 HOH 8 408 129 HOH HOH A . E 4 HOH 9 409 19 HOH HOH A . E 4 HOH 10 410 6 HOH HOH A . E 4 HOH 11 411 59 HOH HOH A . E 4 HOH 12 412 2 HOH HOH A . E 4 HOH 13 413 33 HOH HOH A . E 4 HOH 14 414 159 HOH HOH A . E 4 HOH 15 415 80 HOH HOH A . E 4 HOH 16 416 187 HOH HOH A . E 4 HOH 17 417 147 HOH HOH A . E 4 HOH 18 418 130 HOH HOH A . E 4 HOH 19 419 134 HOH HOH A . E 4 HOH 20 420 9 HOH HOH A . E 4 HOH 21 421 107 HOH HOH A . E 4 HOH 22 422 102 HOH HOH A . E 4 HOH 23 423 5 HOH HOH A . E 4 HOH 24 424 162 HOH HOH A . E 4 HOH 25 425 48 HOH HOH A . E 4 HOH 26 426 81 HOH HOH A . E 4 HOH 27 427 138 HOH HOH A . E 4 HOH 28 428 87 HOH HOH A . E 4 HOH 29 429 109 HOH HOH A . E 4 HOH 30 430 24 HOH HOH A . E 4 HOH 31 431 22 HOH HOH A . E 4 HOH 32 432 171 HOH HOH A . E 4 HOH 33 433 38 HOH HOH A . E 4 HOH 34 434 42 HOH HOH A . E 4 HOH 35 435 184 HOH HOH A . E 4 HOH 36 436 13 HOH HOH A . E 4 HOH 37 437 148 HOH HOH A . E 4 HOH 38 438 93 HOH HOH A . E 4 HOH 39 439 10 HOH HOH A . E 4 HOH 40 440 54 HOH HOH A . E 4 HOH 41 441 36 HOH HOH A . E 4 HOH 42 442 50 HOH HOH A . E 4 HOH 43 443 70 HOH HOH A . E 4 HOH 44 444 108 HOH HOH A . E 4 HOH 45 445 127 HOH HOH A . E 4 HOH 46 446 12 HOH HOH A . E 4 HOH 47 447 135 HOH HOH A . E 4 HOH 48 448 4 HOH HOH A . E 4 HOH 49 449 146 HOH HOH A . E 4 HOH 50 450 98 HOH HOH A . E 4 HOH 51 451 169 HOH HOH A . E 4 HOH 52 452 25 HOH HOH A . E 4 HOH 53 453 121 HOH HOH A . E 4 HOH 54 454 31 HOH HOH A . E 4 HOH 55 455 49 HOH HOH A . E 4 HOH 56 456 11 HOH HOH A . E 4 HOH 57 457 23 HOH HOH A . E 4 HOH 58 458 45 HOH HOH A . E 4 HOH 59 459 173 HOH HOH A . E 4 HOH 60 460 92 HOH HOH A . E 4 HOH 61 461 105 HOH HOH A . E 4 HOH 62 462 94 HOH HOH A . E 4 HOH 63 463 123 HOH HOH A . E 4 HOH 64 464 68 HOH HOH A . E 4 HOH 65 465 35 HOH HOH A . E 4 HOH 66 466 46 HOH HOH A . E 4 HOH 67 467 112 HOH HOH A . E 4 HOH 68 468 53 HOH HOH A . E 4 HOH 69 469 95 HOH HOH A . E 4 HOH 70 470 30 HOH HOH A . E 4 HOH 71 471 99 HOH HOH A . E 4 HOH 72 472 3 HOH HOH A . E 4 HOH 73 473 179 HOH HOH A . E 4 HOH 74 474 29 HOH HOH A . E 4 HOH 75 475 71 HOH HOH A . E 4 HOH 76 476 188 HOH HOH A . E 4 HOH 77 477 76 HOH HOH A . E 4 HOH 78 478 57 HOH HOH A . E 4 HOH 79 479 122 HOH HOH A . E 4 HOH 80 480 66 HOH HOH A . E 4 HOH 81 481 20 HOH HOH A . E 4 HOH 82 482 194 HOH HOH A . E 4 HOH 83 483 62 HOH HOH A . E 4 HOH 84 484 7 HOH HOH A . E 4 HOH 85 485 21 HOH HOH A . E 4 HOH 86 486 39 HOH HOH A . E 4 HOH 87 487 119 HOH HOH A . E 4 HOH 88 488 82 HOH HOH A . E 4 HOH 89 489 44 HOH HOH A . E 4 HOH 90 490 26 HOH HOH A . E 4 HOH 91 491 72 HOH HOH A . E 4 HOH 92 492 47 HOH HOH A . E 4 HOH 93 493 64 HOH HOH A . E 4 HOH 94 494 88 HOH HOH A . E 4 HOH 95 495 52 HOH HOH A . E 4 HOH 96 496 174 HOH HOH A . E 4 HOH 97 497 41 HOH HOH A . E 4 HOH 98 498 56 HOH HOH A . E 4 HOH 99 499 182 HOH HOH A . E 4 HOH 100 500 8 HOH HOH A . E 4 HOH 101 501 160 HOH HOH A . E 4 HOH 102 502 172 HOH HOH A . E 4 HOH 103 503 55 HOH HOH A . E 4 HOH 104 504 185 HOH HOH A . E 4 HOH 105 505 75 HOH HOH A . E 4 HOH 106 506 139 HOH HOH A . E 4 HOH 107 507 183 HOH HOH A . E 4 HOH 108 508 37 HOH HOH A . E 4 HOH 109 509 137 HOH HOH A . E 4 HOH 110 510 58 HOH HOH A . E 4 HOH 111 511 17 HOH HOH A . E 4 HOH 112 512 89 HOH HOH A . E 4 HOH 113 513 18 HOH HOH A . E 4 HOH 114 514 67 HOH HOH A . E 4 HOH 115 515 69 HOH HOH A . E 4 HOH 116 516 28 HOH HOH A . E 4 HOH 117 517 15 HOH HOH A . E 4 HOH 118 518 74 HOH HOH A . E 4 HOH 119 519 118 HOH HOH A . E 4 HOH 120 520 34 HOH HOH A . E 4 HOH 121 521 1 HOH HOH A . E 4 HOH 122 522 141 HOH HOH A . E 4 HOH 123 523 116 HOH HOH A . E 4 HOH 124 524 100 HOH HOH A . E 4 HOH 125 525 125 HOH HOH A . E 4 HOH 126 526 193 HOH HOH A . E 4 HOH 127 527 16 HOH HOH A . E 4 HOH 128 528 32 HOH HOH A . E 4 HOH 129 529 149 HOH HOH A . E 4 HOH 130 530 78 HOH HOH A . E 4 HOH 131 531 60 HOH HOH A . E 4 HOH 132 532 97 HOH HOH A . E 4 HOH 133 533 181 HOH HOH A . E 4 HOH 134 534 90 HOH HOH A . E 4 HOH 135 535 51 HOH HOH A . E 4 HOH 136 536 14 HOH HOH A . E 4 HOH 137 537 115 HOH HOH A . E 4 HOH 138 538 103 HOH HOH A . E 4 HOH 139 539 84 HOH HOH A . E 4 HOH 140 540 27 HOH HOH A . E 4 HOH 141 541 128 HOH HOH A . E 4 HOH 142 542 79 HOH HOH A . E 4 HOH 143 543 117 HOH HOH A . E 4 HOH 144 544 113 HOH HOH A . E 4 HOH 145 545 140 HOH HOH A . E 4 HOH 146 546 86 HOH HOH A . E 4 HOH 147 547 191 HOH HOH A . E 4 HOH 148 548 132 HOH HOH A . E 4 HOH 149 549 40 HOH HOH A . E 4 HOH 150 550 155 HOH HOH A . E 4 HOH 151 551 136 HOH HOH A . E 4 HOH 152 552 180 HOH HOH A . E 4 HOH 153 553 145 HOH HOH A . E 4 HOH 154 554 91 HOH HOH A . E 4 HOH 155 555 192 HOH HOH A . E 4 HOH 156 556 131 HOH HOH A . E 4 HOH 157 557 189 HOH HOH A . E 4 HOH 158 558 114 HOH HOH A . E 4 HOH 159 559 96 HOH HOH A . E 4 HOH 160 560 177 HOH HOH A . E 4 HOH 161 561 144 HOH HOH A . E 4 HOH 162 562 190 HOH HOH A . E 4 HOH 163 563 157 HOH HOH A . E 4 HOH 164 564 104 HOH HOH A . E 4 HOH 165 565 163 HOH HOH A . E 4 HOH 166 566 178 HOH HOH A . E 4 HOH 167 567 73 HOH HOH A . E 4 HOH 168 568 151 HOH HOH A . E 4 HOH 169 569 43 HOH HOH A . E 4 HOH 170 570 120 HOH HOH A . E 4 HOH 171 571 63 HOH HOH A . E 4 HOH 172 572 154 HOH HOH A . E 4 HOH 173 573 165 HOH HOH A . E 4 HOH 174 574 111 HOH HOH A . E 4 HOH 175 575 161 HOH HOH A . E 4 HOH 176 576 153 HOH HOH A . E 4 HOH 177 577 106 HOH HOH A . E 4 HOH 178 578 168 HOH HOH A . E 4 HOH 179 579 85 HOH HOH A . E 4 HOH 180 580 110 HOH HOH A . E 4 HOH 181 581 175 HOH HOH A . E 4 HOH 182 582 176 HOH HOH A . E 4 HOH 183 583 156 HOH HOH A . E 4 HOH 184 584 150 HOH HOH A . E 4 HOH 185 585 124 HOH HOH A . E 4 HOH 186 586 65 HOH HOH A . E 4 HOH 187 587 101 HOH HOH A . E 4 HOH 188 588 186 HOH HOH A . E 4 HOH 189 589 126 HOH HOH A . E 4 HOH 190 590 152 HOH HOH A . E 4 HOH 191 591 83 HOH HOH A . E 4 HOH 192 592 170 HOH HOH A . E 4 HOH 193 593 167 HOH HOH A . E 4 HOH 194 594 158 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1920 ? 1 MORE -3 ? 1 'SSA (A^2)' 7840 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-07-18 2 'Structure model' 1 1 2019-12-11 3 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Data collection' 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp 2 2 'Structure model' pdbx_audit_support 3 3 'Structure model' atom_site 4 3 'Structure model' chem_comp 5 3 'Structure model' entity 6 3 'Structure model' pdbx_branch_scheme 7 3 'Structure model' pdbx_chem_comp_identifier 8 3 'Structure model' pdbx_entity_branch 9 3 'Structure model' pdbx_entity_branch_descriptor 10 3 'Structure model' pdbx_entity_branch_link 11 3 'Structure model' pdbx_entity_branch_list 12 3 'Structure model' pdbx_entity_nonpoly 13 3 'Structure model' pdbx_nonpoly_scheme 14 3 'Structure model' pdbx_struct_assembly_gen 15 3 'Structure model' struct_asym 16 3 'Structure model' struct_conn 17 3 'Structure model' struct_site 18 3 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_chem_comp.type' 2 2 'Structure model' '_pdbx_audit_support.funding_organization' 3 3 'Structure model' '_atom_site.B_iso_or_equiv' 4 3 'Structure model' '_atom_site.Cartn_x' 5 3 'Structure model' '_atom_site.Cartn_y' 6 3 'Structure model' '_atom_site.Cartn_z' 7 3 'Structure model' '_atom_site.auth_asym_id' 8 3 'Structure model' '_atom_site.auth_atom_id' 9 3 'Structure model' '_atom_site.auth_comp_id' 10 3 'Structure model' '_atom_site.auth_seq_id' 11 3 'Structure model' '_atom_site.label_asym_id' 12 3 'Structure model' '_atom_site.label_atom_id' 13 3 'Structure model' '_atom_site.label_comp_id' 14 3 'Structure model' '_atom_site.label_entity_id' 15 3 'Structure model' '_atom_site.type_symbol' 16 3 'Structure model' '_chem_comp.name' 17 3 'Structure model' '_chem_comp.type' 18 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 19 3 'Structure model' '_struct_conn.pdbx_dist_value' 20 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 21 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 27 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.8.4_1496 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? iMOSFLM ? ? ? 7.0.9 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? 3.3.21 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.5.5 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 87 ? ? -103.27 -77.11 2 1 THR A 99 ? ? -125.68 -54.95 3 1 TYR A 170 ? ? 62.90 -102.72 4 1 ASN A 192 ? ? -145.12 50.82 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' AI36040 1 'Robert A. Welch Foundation' 'United States' Q1279 2 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 BGC 1 B BGC 1 B BGC 5 n B 2 GAL 2 B GAL 2 B GAL 4 n B 2 NAG 3 B NAG 3 B NAG 3 n B 2 GAL 4 B GAL 4 B GAL 2 n B 2 FUC 5 B FUC 5 B FUC 1 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/4,5,4/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4/a4-b1_b3-c1_c3-d1_d2-e1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-Glcp]{[(4+1)][b-D-Galp]{[(3+1)][b-D-GlcpNAc]{[(3+1)][b-D-Galp]{[(2+1)][a-L-Fucp]{}}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 GAL C1 O1 1 BGC O4 HO4 sing ? 2 2 3 NAG C1 O1 2 GAL O3 HO3 sing ? 3 2 4 GAL C1 O1 3 NAG O3 HO3 sing ? 4 2 5 FUC C1 O1 4 GAL O2 HO2 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 BGC 1 n 2 GAL 2 n 2 NAG 3 n 2 GAL 4 n 2 FUC 5 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #