HEADER HYDROLASE 23-MAY-17 5VXA TITLE STRUCTURE OF THE HUMAN MESH1-NADPH COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE COMPND 3 MESH1; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: HD DOMAIN-CONTAINING PROTEIN 3,METAZOAN SPOT HOMOLOG 1, COMPND 6 MESH1,PENTA-PHOSPHATE GUANOSINE-3'-PYROPHOSPHOHYDROLASE,(PPGPP)ASE; COMPND 7 EC: 3.1.7.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HDDC3, MESH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MESH1 NADPH, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.ROSE,P.ZHOU REVDAT 4 30-MAR-22 5VXA 1 JRNL LINK REVDAT 3 19-DEC-18 5VXA 1 JRNL REVDAT 2 30-MAY-18 5VXA 1 JRNL REVDAT 1 23-MAY-18 5VXA 0 JRNL AUTH C.C.DING,J.ROSE,T.SUN,J.WU,P.H.CHEN,C.C.LIN,W.H.YANG, JRNL AUTH 2 K.Y.CHEN,H.LEE,E.XU,S.TIAN,J.AKINWUNTAN,J.ZHAO,Z.GUAN, JRNL AUTH 3 P.ZHOU,J.T.CHI JRNL TITL MESH1 IS A CYTOSOLIC NADPH PHOSPHATASE THAT REGULATES JRNL TITL 2 FERROPTOSIS. JRNL REF NAT METAB V. 2 270 2020 JRNL REFN ISSN 2522-5812 JRNL PMID 32462112 JRNL DOI 10.1038/S42255-020-0181-1 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.-K.C.DING,J.ROSE,P.ZHOU,J.-T.A.CHI REMARK 1 TITL MAMMALIAN STRINGENT-LIKE RESPONSE MEDIATED BY THE CYTOSOLIC REMARK 1 TITL 2 NADPH PHOSPHATASE MESH1 REMARK 1 REF BIORXIV 2018 REMARK 1 REFN REMARK 1 DOI 10.1101/325266 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0782 - 4.5225 1.00 2681 142 0.1731 0.1783 REMARK 3 2 4.5225 - 3.5903 1.00 2529 148 0.1314 0.1998 REMARK 3 3 3.5903 - 3.1367 1.00 2528 140 0.1500 0.1838 REMARK 3 4 3.1367 - 2.8500 1.00 2494 137 0.1722 0.1995 REMARK 3 5 2.8500 - 2.6457 1.00 2486 136 0.1714 0.2270 REMARK 3 6 2.6457 - 2.4898 1.00 2475 146 0.1707 0.2293 REMARK 3 7 2.4898 - 2.3651 1.00 2501 115 0.1730 0.2037 REMARK 3 8 2.3651 - 2.2621 1.00 2492 117 0.1825 0.2231 REMARK 3 9 2.2621 - 2.1751 1.00 2430 127 0.1939 0.2464 REMARK 3 10 2.1751 - 2.1000 1.00 2491 134 0.1965 0.2393 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3082 REMARK 3 ANGLE : 0.972 4185 REMARK 3 CHIRALITY : 0.051 467 REMARK 3 PLANARITY : 0.005 543 REMARK 3 DIHEDRAL : 13.641 1859 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5487 -17.2402 -36.5393 REMARK 3 T TENSOR REMARK 3 T11: 0.0895 T22: 0.1231 REMARK 3 T33: 0.0739 T12: -0.0176 REMARK 3 T13: -0.0169 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 3.0398 L22: 3.7780 REMARK 3 L33: 1.8957 L12: 1.6158 REMARK 3 L13: 0.0786 L23: 0.0315 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: 0.0199 S13: -0.0770 REMARK 3 S21: 0.1605 S22: 0.0350 S23: -0.2276 REMARK 3 S31: -0.1005 S32: 0.1768 S33: -0.0521 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5556 -9.1012 -28.1660 REMARK 3 T TENSOR REMARK 3 T11: 0.2277 T22: 0.1084 REMARK 3 T33: 0.0996 T12: -0.0898 REMARK 3 T13: -0.0161 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.2099 L22: 1.9964 REMARK 3 L33: 1.5948 L12: 0.0237 REMARK 3 L13: 0.1765 L23: 0.9103 REMARK 3 S TENSOR REMARK 3 S11: 0.1655 S12: -0.0728 S13: 0.1506 REMARK 3 S21: 0.5111 S22: -0.1454 S23: -0.1105 REMARK 3 S31: -0.3103 S32: 0.1182 S33: -0.0034 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1380 -18.1818 -27.2880 REMARK 3 T TENSOR REMARK 3 T11: 0.2267 T22: 0.3474 REMARK 3 T33: 0.3066 T12: -0.0783 REMARK 3 T13: -0.2004 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 2.6905 L22: 1.8542 REMARK 3 L33: 1.1949 L12: 0.3937 REMARK 3 L13: -0.4599 L23: -0.4904 REMARK 3 S TENSOR REMARK 3 S11: 0.1542 S12: -0.2963 S13: -0.4198 REMARK 3 S21: 0.5995 S22: -0.0930 S23: -0.7962 REMARK 3 S31: -0.1293 S32: 0.5232 S33: -0.0970 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1163 -25.9682 -15.0607 REMARK 3 T TENSOR REMARK 3 T11: 0.4268 T22: 0.3283 REMARK 3 T33: 0.2452 T12: -0.1049 REMARK 3 T13: -0.1253 T23: 0.1040 REMARK 3 L TENSOR REMARK 3 L11: 3.3482 L22: 2.3773 REMARK 3 L33: 0.5944 L12: 1.2806 REMARK 3 L13: -1.2694 L23: -0.9639 REMARK 3 S TENSOR REMARK 3 S11: -0.4502 S12: -0.1915 S13: -0.6109 REMARK 3 S21: 0.3490 S22: -0.2046 S23: -0.4136 REMARK 3 S31: -0.3409 S32: 0.5140 S33: 0.3090 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4230 -20.6966 -19.8615 REMARK 3 T TENSOR REMARK 3 T11: 0.3482 T22: 0.1163 REMARK 3 T33: 0.1004 T12: -0.0285 REMARK 3 T13: 0.0485 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.4699 L22: 1.4776 REMARK 3 L33: 1.2854 L12: 0.3684 REMARK 3 L13: -0.1324 L23: -0.4964 REMARK 3 S TENSOR REMARK 3 S11: 0.1295 S12: -0.0104 S13: 0.0735 REMARK 3 S21: 0.7398 S22: -0.0617 S23: 0.2925 REMARK 3 S31: 0.0069 S32: -0.0109 S33: -0.0728 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 158 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1287 -12.0896 -13.9685 REMARK 3 T TENSOR REMARK 3 T11: 0.4988 T22: 0.0438 REMARK 3 T33: -0.6019 T12: 0.1072 REMARK 3 T13: 0.4658 T23: -0.3790 REMARK 3 L TENSOR REMARK 3 L11: 3.2388 L22: 2.7932 REMARK 3 L33: 0.6714 L12: 2.3593 REMARK 3 L13: -0.3297 L23: 0.5813 REMARK 3 S TENSOR REMARK 3 S11: -0.0955 S12: -0.6178 S13: -0.1487 REMARK 3 S21: 0.7427 S22: -0.1226 S23: 0.5586 REMARK 3 S31: -0.6023 S32: -0.0719 S33: 0.0049 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4394 -6.6773 -44.2963 REMARK 3 T TENSOR REMARK 3 T11: 0.0831 T22: 0.0857 REMARK 3 T33: 0.1021 T12: -0.0050 REMARK 3 T13: 0.0409 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.1924 L22: 1.8295 REMARK 3 L33: 1.1773 L12: 0.1041 REMARK 3 L13: -0.0069 L23: 0.1315 REMARK 3 S TENSOR REMARK 3 S11: 0.0744 S12: 0.0330 S13: 0.1490 REMARK 3 S21: 0.0291 S22: -0.0185 S23: 0.0094 REMARK 3 S31: -0.1792 S32: -0.0339 S33: -0.0450 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5074 -4.5255 -63.3397 REMARK 3 T TENSOR REMARK 3 T11: 0.2835 T22: 0.2831 REMARK 3 T33: 0.3036 T12: 0.1298 REMARK 3 T13: 0.0623 T23: 0.1187 REMARK 3 L TENSOR REMARK 3 L11: 2.9472 L22: 0.8109 REMARK 3 L33: 3.2999 L12: 0.4154 REMARK 3 L13: 0.8034 L23: 1.5434 REMARK 3 S TENSOR REMARK 3 S11: 0.3610 S12: 0.5485 S13: 0.1956 REMARK 3 S21: -0.2545 S22: -0.2757 S23: 0.4864 REMARK 3 S31: -0.3547 S32: -0.5504 S33: -0.0761 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4290 -13.7202 -59.4831 REMARK 3 T TENSOR REMARK 3 T11: 0.0773 T22: 0.1791 REMARK 3 T33: 0.1456 T12: 0.0161 REMARK 3 T13: 0.0660 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 1.2209 L22: 1.6202 REMARK 3 L33: 0.9164 L12: -0.0290 REMARK 3 L13: 0.1796 L23: 0.3724 REMARK 3 S TENSOR REMARK 3 S11: 0.2171 S12: 0.1699 S13: -0.0728 REMARK 3 S21: -0.0770 S22: -0.0849 S23: -0.0889 REMARK 3 S31: -0.0813 S32: -0.0634 S33: -0.0326 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 158 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9140 -7.2573 -60.3701 REMARK 3 T TENSOR REMARK 3 T11: 0.1163 T22: 0.2198 REMARK 3 T33: 0.1995 T12: -0.0149 REMARK 3 T13: 0.0908 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 0.6943 L22: 3.3166 REMARK 3 L33: 1.5026 L12: -0.6874 REMARK 3 L13: -0.8509 L23: 1.9164 REMARK 3 S TENSOR REMARK 3 S11: 0.1071 S12: 0.0834 S13: 0.2465 REMARK 3 S21: -0.1102 S22: 0.0796 S23: -0.3050 REMARK 3 S31: -0.2275 S32: 0.3143 S33: -0.1316 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VXA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000228100. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26452 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 41.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.5 MG/ML HMESH1 D66K, 50 MM NADPH, 25 REMARK 280 MM TRIS (PH 8.0), 100 MM NACL, 0.05% 2-MERCAPTOETHANOL, 0.5 MM REMARK 280 ZNCL2, 100 MM AMMONIUM ACETATE, 50 MM SODIUM CITRATE, 12.5% PEG REMARK 280 4000., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.89000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.23000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.18500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.23000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.89000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.18500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 GLU A 106 CG CD OE1 OE2 REMARK 470 GLU A 140 CG CD OE1 OE2 REMARK 470 LYS A 155 CD CE NZ REMARK 470 ARG A 162 CD NE CZ NH1 NH2 REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 LYS A 173 CD CE NZ REMARK 470 ILE A 179 CG1 CG2 CD1 REMARK 470 LYS B 93 CD CE NZ REMARK 470 GLU B 136 OE1 OE2 REMARK 470 GLU B 166 CD OE1 OE2 REMARK 470 ILE B 179 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 363 O HOH B 449 2.10 REMARK 500 O HOH B 438 O HOH B 447 2.14 REMARK 500 O HOH A 314 O HOH A 350 2.17 REMARK 500 O HOH B 308 O HOH B 312 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 51 109.92 -59.30 REMARK 500 ASN A 161 119.68 -161.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NDP B 202 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 35 NE2 REMARK 620 2 HIS A 61 NE2 117.8 REMARK 620 3 ASP A 62 OD2 94.2 80.4 REMARK 620 4 ASP A 122 OD1 81.5 96.4 172.8 REMARK 620 5 HOH A 313 O 137.9 102.9 81.3 105.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 206 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 NDP A 202 O2A REMARK 620 2 NDP A 202 O1N 57.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 35 NE2 REMARK 620 2 HIS B 61 NE2 115.6 REMARK 620 3 ASP B 62 OD2 92.2 78.1 REMARK 620 4 ASP B 122 OD1 84.7 91.2 166.3 REMARK 620 5 HOH B 312 O 131.9 112.3 93.5 98.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 205 DBREF 5VXA A 1 179 UNP Q8N4P3 MESH1_HUMAN 1 179 DBREF 5VXA B 1 179 UNP Q8N4P3 MESH1_HUMAN 1 179 SEQADV 5VXA HIS A 0 UNP Q8N4P3 EXPRESSION TAG SEQADV 5VXA LYS A 66 UNP Q8N4P3 ASP 66 CONFLICT SEQADV 5VXA HIS B 0 UNP Q8N4P3 EXPRESSION TAG SEQADV 5VXA LYS B 66 UNP Q8N4P3 ASP 66 CONFLICT SEQRES 1 A 180 HIS MET GLY SER GLU ALA ALA GLN LEU LEU GLU ALA ALA SEQRES 2 A 180 ASP PHE ALA ALA ARG LYS HIS ARG GLN GLN ARG ARG LYS SEQRES 3 A 180 ASP PRO GLU GLY THR PRO TYR ILE ASN HIS PRO ILE GLY SEQRES 4 A 180 VAL ALA ARG ILE LEU THR HIS GLU ALA GLY ILE THR ASP SEQRES 5 A 180 ILE VAL VAL LEU GLN ALA ALA LEU LEU HIS ASP THR VAL SEQRES 6 A 180 GLU LYS THR ASP THR THR LEU ASP GLU VAL GLU LEU HIS SEQRES 7 A 180 PHE GLY ALA GLN VAL ARG ARG LEU VAL GLU GLU VAL THR SEQRES 8 A 180 ASP ASP LYS THR LEU PRO LYS LEU GLU ARG LYS ARG LEU SEQRES 9 A 180 GLN VAL GLU GLN ALA PRO HIS SER SER PRO GLY ALA LYS SEQRES 10 A 180 LEU VAL LYS LEU ALA ASP LYS LEU TYR ASN LEU ARG ASP SEQRES 11 A 180 LEU ASN ARG CYS THR PRO GLU GLY TRP SER GLU HIS ARG SEQRES 12 A 180 VAL GLN GLU TYR PHE GLU TRP ALA ALA GLN VAL VAL LYS SEQRES 13 A 180 GLY LEU GLN GLY THR ASN ARG GLN LEU GLU GLU ALA LEU SEQRES 14 A 180 LYS HIS LEU PHE LYS GLN ARG GLY LEU THR ILE SEQRES 1 B 180 HIS MET GLY SER GLU ALA ALA GLN LEU LEU GLU ALA ALA SEQRES 2 B 180 ASP PHE ALA ALA ARG LYS HIS ARG GLN GLN ARG ARG LYS SEQRES 3 B 180 ASP PRO GLU GLY THR PRO TYR ILE ASN HIS PRO ILE GLY SEQRES 4 B 180 VAL ALA ARG ILE LEU THR HIS GLU ALA GLY ILE THR ASP SEQRES 5 B 180 ILE VAL VAL LEU GLN ALA ALA LEU LEU HIS ASP THR VAL SEQRES 6 B 180 GLU LYS THR ASP THR THR LEU ASP GLU VAL GLU LEU HIS SEQRES 7 B 180 PHE GLY ALA GLN VAL ARG ARG LEU VAL GLU GLU VAL THR SEQRES 8 B 180 ASP ASP LYS THR LEU PRO LYS LEU GLU ARG LYS ARG LEU SEQRES 9 B 180 GLN VAL GLU GLN ALA PRO HIS SER SER PRO GLY ALA LYS SEQRES 10 B 180 LEU VAL LYS LEU ALA ASP LYS LEU TYR ASN LEU ARG ASP SEQRES 11 B 180 LEU ASN ARG CYS THR PRO GLU GLY TRP SER GLU HIS ARG SEQRES 12 B 180 VAL GLN GLU TYR PHE GLU TRP ALA ALA GLN VAL VAL LYS SEQRES 13 B 180 GLY LEU GLN GLY THR ASN ARG GLN LEU GLU GLU ALA LEU SEQRES 14 B 180 LYS HIS LEU PHE LYS GLN ARG GLY LEU THR ILE HET ZN A 201 1 HET NDP A 202 48 HET EDO A 203 4 HET EDO A 204 4 HET BME A 205 4 HET NA A 206 1 HET ZN B 201 1 HET NDP B 202 31 HET EDO B 203 4 HET BME B 204 8 HET TRS B 205 8 HETNAM ZN ZINC ION HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM BME BETA-MERCAPTOETHANOL HETNAM NA SODIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN EDO ETHYLENE GLYCOL HETSYN TRS TRIS BUFFER FORMUL 3 ZN 2(ZN 2+) FORMUL 4 NDP 2(C21 H30 N7 O17 P3) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 7 BME 2(C2 H6 O S) FORMUL 8 NA NA 1+ FORMUL 13 TRS C4 H12 N O3 1+ FORMUL 14 HOH *256(H2 O) HELIX 1 AA1 SER A 3 HIS A 19 1 17 HELIX 2 AA2 ILE A 33 GLU A 46 1 14 HELIX 3 AA3 ASP A 51 HIS A 61 1 11 HELIX 4 AA4 ASP A 62 THR A 67 1 6 HELIX 5 AA5 THR A 70 GLY A 79 1 10 HELIX 6 AA6 GLY A 79 VAL A 89 1 11 HELIX 7 AA7 PRO A 96 ALA A 108 1 13 HELIX 8 AA8 SER A 112 CYS A 133 1 22 HELIX 9 AA9 SER A 139 GLY A 156 1 18 HELIX 10 AB1 ASN A 161 ARG A 175 1 15 HELIX 11 AB2 SER B 3 HIS B 19 1 17 HELIX 12 AB3 ILE B 33 GLU B 46 1 14 HELIX 13 AB4 ASP B 51 HIS B 61 1 11 HELIX 14 AB5 ASP B 62 THR B 67 1 6 HELIX 15 AB6 THR B 70 GLY B 79 1 10 HELIX 16 AB7 GLY B 79 VAL B 89 1 11 HELIX 17 AB8 PRO B 96 ALA B 108 1 13 HELIX 18 AB9 SER B 112 CYS B 133 1 22 HELIX 19 AC1 SER B 139 LEU B 157 1 19 HELIX 20 AC2 ASN B 161 GLN B 174 1 14 LINK SG CYS A 133 S2 BME A 205 1555 1555 1.99 LINK SG ACYS B 133 S2 ABME B 204 1555 1555 2.10 LINK SG BCYS B 133 S2 BBME B 204 1555 1555 2.08 LINK NE2 HIS A 35 ZN ZN A 201 1555 1555 1.93 LINK NE2 HIS A 61 ZN ZN A 201 1555 1555 1.95 LINK OD2 ASP A 62 ZN ZN A 201 1555 1555 2.41 LINK OD1 ASP A 122 ZN ZN A 201 1555 1555 2.18 LINK ZN ZN A 201 O HOH A 313 1555 1555 2.08 LINK O2A NDP A 202 NA NA A 206 1555 1555 2.24 LINK O1N NDP A 202 NA NA A 206 1555 1555 2.22 LINK NE2 HIS B 35 ZN ZN B 201 1555 1555 2.03 LINK NE2 HIS B 61 ZN ZN B 201 1555 1555 1.95 LINK OD2 ASP B 62 ZN ZN B 201 1555 1555 2.20 LINK OD1 ASP B 122 ZN ZN B 201 1555 1555 2.24 LINK ZN ZN B 201 O HOH B 312 1555 1555 1.88 SITE 1 AC1 6 HIS A 35 HIS A 61 ASP A 62 ASP A 122 SITE 2 AC1 6 NDP A 202 HOH A 313 SITE 1 AC2 34 ARG A 24 LYS A 25 ASP A 26 TYR A 32 SITE 2 AC2 34 HIS A 35 ASP A 62 GLU A 65 LYS A 66 SITE 3 AC2 34 LYS A 97 LEU A 98 LYS A 101 ASP A 122 SITE 4 AC2 34 ASN A 126 ASP A 129 LEU A 130 TRP A 138 SITE 5 AC2 34 HIS A 141 ARG A 142 GLU A 145 TYR A 146 SITE 6 AC2 34 ZN A 201 NA A 206 HOH A 307 HOH A 310 SITE 7 AC2 34 HOH A 311 HOH A 312 HOH A 313 HOH A 314 SITE 8 AC2 34 GLU B 75 LEU B 76 HIS B 77 PHE B 78 SITE 9 AC2 34 GLY B 79 HOH B 320 SITE 1 AC3 2 GLU A 10 HIS A 77 SITE 1 AC4 4 VAL A 64 GLU A 65 ASP A 91 LYS A 93 SITE 1 AC5 2 GLU A 28 ARG A 132 SITE 1 AC6 1 NDP A 202 SITE 1 AC7 6 HIS B 35 HIS B 61 ASP B 62 ASP B 122 SITE 2 AC7 6 NDP B 202 HOH B 312 SITE 1 AC8 22 ARG B 24 LYS B 25 TYR B 32 HIS B 35 SITE 2 AC8 22 LYS B 66 LYS B 97 LYS B 101 ASP B 122 SITE 3 AC8 22 ASN B 126 ASP B 129 LEU B 130 TRP B 138 SITE 4 AC8 22 ARG B 142 TYR B 146 ZN B 201 HOH B 306 SITE 5 AC8 22 HOH B 308 HOH B 312 HOH B 327 HOH B 330 SITE 6 AC8 22 HOH B 341 HOH B 362 SITE 1 AC9 4 GLN B 22 ARG B 23 GLN B 174 HOH B 334 SITE 1 AD1 3 THR B 94 ARG B 132 HOH B 302 SITE 1 AD2 5 ARG B 142 HOH B 306 HOH B 309 HOH B 384 SITE 2 AD2 5 HOH B 409 CRYST1 47.780 80.370 114.460 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020929 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012442 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008737 0.00000