HEADER IMMUNE SYSTEM 23-MAY-17 5VXK TITLE 2.55 A RESOLUTION STRUCTURE OF IPAD FROM SHIGELLA FLEXNERI IN COMPLEX TITLE 2 WITH SINGLE-DOMAIN ANTIBODY JMK-H2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SINGLE-DOMAIN ANTIBODY JMK-H2; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: INVASIN IPAD; COMPND 7 CHAIN: A; COMPND 8 SYNONYM: 36 KDA MEMBRANE ANTIGEN; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 3 ORGANISM_TAXID: 30538; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 8 ORGANISM_TAXID: 623; SOURCE 9 GENE: IPAD, CP0126; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIP PROTEIN, VHH, T3SS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.L.BARTA,S.LOVELL,K.P.BATTAILE,W.D.PICKING,W.L.PICKING REVDAT 2 04-OCT-23 5VXK 1 REMARK REVDAT 1 30-AUG-17 5VXK 0 JRNL AUTH M.L.BARTA,S.LOVELL,K.P.BATTAILE,W.D.PICKING,W.L.PICKING JRNL TITL 2.55 A RESOLUTION STRUCTURE OF IPAD FROM SHIGELLA FLEXNERI JRNL TITL 2 IN COMPLEX WITH SINGLE-DOMAIN ANTIBODY JMK-H2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2775 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.210 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 33611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1650 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.1262 - 5.8317 1.00 2661 135 0.1671 0.2157 REMARK 3 2 5.8317 - 4.6314 1.00 2659 147 0.1668 0.2198 REMARK 3 3 4.6314 - 4.0467 1.00 2660 119 0.1546 0.2182 REMARK 3 4 4.0467 - 3.6770 1.00 2702 131 0.1743 0.2432 REMARK 3 5 3.6770 - 3.4136 1.00 2635 146 0.2007 0.2866 REMARK 3 6 3.4136 - 3.2125 1.00 2669 134 0.2366 0.3381 REMARK 3 7 3.2125 - 3.0517 1.00 2666 135 0.2375 0.3017 REMARK 3 8 3.0517 - 2.9189 1.00 2665 162 0.2827 0.3743 REMARK 3 9 2.9189 - 2.8065 1.00 2659 122 0.2851 0.4013 REMARK 3 10 2.8065 - 2.7097 1.00 2658 147 0.2943 0.3315 REMARK 3 11 2.7097 - 2.6250 0.99 2686 123 0.2846 0.3648 REMARK 3 12 2.6250 - 2.5500 1.00 2641 149 0.2811 0.3610 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 46.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3166 REMARK 3 ANGLE : 0.536 4290 REMARK 3 CHIRALITY : 0.038 492 REMARK 3 PLANARITY : 0.003 557 REMARK 3 DIHEDRAL : 16.377 1926 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9128 -21.1372 -2.7435 REMARK 3 T TENSOR REMARK 3 T11: 0.2899 T22: 0.6746 REMARK 3 T33: -0.6270 T12: 0.0371 REMARK 3 T13: 0.1329 T23: -0.0851 REMARK 3 L TENSOR REMARK 3 L11: -0.0009 L22: 0.0217 REMARK 3 L33: 0.0116 L12: 0.0172 REMARK 3 L13: 0.0340 L23: 0.0170 REMARK 3 S TENSOR REMARK 3 S11: -0.1133 S12: -0.2039 S13: 0.0456 REMARK 3 S21: -0.1175 S22: -0.5453 S23: 0.1828 REMARK 3 S31: -0.0324 S32: 0.1306 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 34 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4913 -27.2195 -4.8514 REMARK 3 T TENSOR REMARK 3 T11: 0.3033 T22: 0.5383 REMARK 3 T33: 0.2175 T12: -0.0527 REMARK 3 T13: 0.0208 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.0151 L22: 0.0014 REMARK 3 L33: -0.0059 L12: 0.0028 REMARK 3 L13: 0.0147 L23: 0.0006 REMARK 3 S TENSOR REMARK 3 S11: 0.0364 S12: -0.2422 S13: 0.3340 REMARK 3 S21: -0.0337 S22: -0.0185 S23: -0.0362 REMARK 3 S31: 0.1082 S32: -0.1858 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9359 -14.7176 -7.8381 REMARK 3 T TENSOR REMARK 3 T11: 0.2510 T22: 0.3991 REMARK 3 T33: 0.3342 T12: 0.0264 REMARK 3 T13: 0.0178 T23: -0.1272 REMARK 3 L TENSOR REMARK 3 L11: -0.0085 L22: 0.0005 REMARK 3 L33: -0.0036 L12: -0.0109 REMARK 3 L13: -0.0040 L23: 0.0034 REMARK 3 S TENSOR REMARK 3 S11: -0.0583 S12: -0.1847 S13: 0.2372 REMARK 3 S21: -0.1370 S22: -0.1000 S23: -0.1051 REMARK 3 S31: -0.0337 S32: -0.1929 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 74 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4739 -17.6372 0.5432 REMARK 3 T TENSOR REMARK 3 T11: -0.4317 T22: 0.5058 REMARK 3 T33: -0.7495 T12: 0.1123 REMARK 3 T13: 0.9015 T23: -0.3981 REMARK 3 L TENSOR REMARK 3 L11: -0.0024 L22: 0.0360 REMARK 3 L33: -0.0003 L12: -0.0021 REMARK 3 L13: 0.0028 L23: -0.0072 REMARK 3 S TENSOR REMARK 3 S11: -0.2854 S12: -0.1349 S13: 0.1776 REMARK 3 S21: 0.0607 S22: -0.4802 S23: -0.6725 REMARK 3 S31: -0.1465 S32: -0.2563 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1265 -25.4892 -10.2888 REMARK 3 T TENSOR REMARK 3 T11: 0.3023 T22: 0.3814 REMARK 3 T33: 0.2751 T12: -0.0072 REMARK 3 T13: 0.0163 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 0.0115 L22: -0.0292 REMARK 3 L33: 0.0091 L12: 0.0603 REMARK 3 L13: 0.0768 L23: -0.0042 REMARK 3 S TENSOR REMARK 3 S11: 0.1260 S12: -0.2471 S13: 0.1978 REMARK 3 S21: -0.1509 S22: -0.3231 S23: 0.0886 REMARK 3 S31: 0.2134 S32: -0.0100 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6145 22.5132 -26.4954 REMARK 3 T TENSOR REMARK 3 T11: 0.5294 T22: 0.4439 REMARK 3 T33: 0.4675 T12: -0.1297 REMARK 3 T13: 0.0282 T23: -0.0589 REMARK 3 L TENSOR REMARK 3 L11: 0.1231 L22: -0.0099 REMARK 3 L33: 0.0006 L12: 0.1058 REMARK 3 L13: 0.1422 L23: -0.0047 REMARK 3 S TENSOR REMARK 3 S11: 0.2017 S12: -0.3628 S13: 0.3037 REMARK 3 S21: 0.1872 S22: -0.0804 S23: 0.2981 REMARK 3 S31: 0.0986 S32: -0.1114 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4193 17.5247 -35.7459 REMARK 3 T TENSOR REMARK 3 T11: 0.3112 T22: 0.2686 REMARK 3 T33: 0.3727 T12: 0.0365 REMARK 3 T13: -0.0543 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 0.0867 L22: 0.1372 REMARK 3 L33: 0.1492 L12: -0.1866 REMARK 3 L13: 0.3528 L23: 0.1574 REMARK 3 S TENSOR REMARK 3 S11: -0.1388 S12: 0.1163 S13: 0.0759 REMARK 3 S21: -0.1500 S22: 0.0613 S23: 0.0764 REMARK 3 S31: -0.0254 S32: 0.0638 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4242 -8.7412 -37.7515 REMARK 3 T TENSOR REMARK 3 T11: 0.3118 T22: 0.2728 REMARK 3 T33: 0.3699 T12: -0.0270 REMARK 3 T13: -0.0796 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 0.0346 L22: 0.0565 REMARK 3 L33: 0.0677 L12: 0.1171 REMARK 3 L13: 0.1680 L23: 0.1155 REMARK 3 S TENSOR REMARK 3 S11: -0.1429 S12: -0.0010 S13: 0.1086 REMARK 3 S21: -0.1956 S22: 0.1055 S23: 0.1267 REMARK 3 S31: 0.1496 S32: -0.1208 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 268 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1384 -0.6201 -30.1768 REMARK 3 T TENSOR REMARK 3 T11: 0.2519 T22: 0.1244 REMARK 3 T33: 0.3254 T12: -0.0086 REMARK 3 T13: -0.0812 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: -0.2620 L22: -0.0578 REMARK 3 L33: 0.2600 L12: 0.1801 REMARK 3 L13: -0.3432 L23: 0.0327 REMARK 3 S TENSOR REMARK 3 S11: -0.0696 S12: 0.0028 S13: 0.0451 REMARK 3 S21: 0.0278 S22: 0.0559 S23: 0.0003 REMARK 3 S31: 0.0298 S32: -0.0430 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VXK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17875 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 45.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.98800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2J0O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M TRIS REMARK 280 -HCL (PH 8.5), 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.32050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.95650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 87.15950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.32050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.95650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.15950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.32050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.95650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.15950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.32050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.95650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 87.15950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 THR B 0 REMARK 465 GLN B 1 REMARK 465 SER B 127 REMARK 465 SER B 128 REMARK 465 GLU B 129 REMARK 465 PRO B 130 REMARK 465 LYS B 131 REMARK 465 THR B 132 REMARK 465 PRO B 133 REMARK 465 LYS B 134 REMARK 465 PRO B 135 REMARK 465 GLN B 136 REMARK 465 PRO B 137 REMARK 465 ARG B 138 REMARK 465 GLN B 139 REMARK 465 GLY B 140 REMARK 465 ALA B 141 REMARK 465 PRO B 142 REMARK 465 VAL B 143 REMARK 465 PRO B 144 REMARK 465 TYR B 145 REMARK 465 PRO B 146 REMARK 465 ASP B 147 REMARK 465 PRO B 148 REMARK 465 LEU B 149 REMARK 465 GLU B 150 REMARK 465 PRO B 151 REMARK 465 ARG B 152 REMARK 465 GLY A 34 REMARK 465 SER A 35 REMARK 465 THR A 36 REMARK 465 GLY A 37 REMARK 465 SER A 38 REMARK 465 HIS A 39 REMARK 465 PRO A 40 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 13 CG CD OE1 NE2 REMARK 470 ARG A 55 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 GLN A 127 CG CD OE1 NE2 REMARK 470 MET A 128 CG SD CE REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 GLN A 222 CG CD OE1 NE2 REMARK 470 LYS A 240 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG B 67 OD2 ASP B 90 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 14 151.40 -49.64 REMARK 500 PHE B 27 125.25 -179.73 REMARK 500 VAL B 64 -24.17 -149.10 REMARK 500 ASP B 73 77.78 -117.24 REMARK 500 LYS A 108 -70.37 -26.15 REMARK 500 ASP A 126 -91.90 71.83 REMARK 500 GLN A 127 -71.73 15.08 REMARK 500 MET A 128 7.01 -161.25 REMARK 500 TYR A 149 -68.48 -105.77 REMARK 500 LYS A 209 108.68 -53.25 REMARK 500 ASN A 215 -54.19 -135.05 REMARK 500 ASN A 216 -178.88 -69.58 REMARK 500 ASN A 241 -133.59 63.75 REMARK 500 REMARK 500 REMARK: NULL DBREF 5VXK B -2 152 PDB 5VXK 5VXK -2 152 DBREF 5VXK A 39 322 UNP P18013 IPAD_SHIFL 39 322 SEQADV 5VXK GLY A 34 UNP P18013 EXPRESSION TAG SEQADV 5VXK SER A 35 UNP P18013 EXPRESSION TAG SEQADV 5VXK THR A 36 UNP P18013 EXPRESSION TAG SEQADV 5VXK GLY A 37 UNP P18013 EXPRESSION TAG SEQADV 5VXK SER A 38 UNP P18013 EXPRESSION TAG SEQADV 5VXK SER A 322 UNP P18013 CYS 322 ENGINEERED MUTATION SEQRES 1 B 155 GLY SER THR GLN LEU GLN LEU VAL GLU SER GLY GLY GLY SEQRES 2 B 155 LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA SEQRES 3 B 155 ALA SER GLY PHE THR LEU ASP ASP GLN PRO ILE ALA TRP SEQRES 4 B 155 PHE ARG GLN ALA PRO GLY LYS GLU ARG GLU GLY VAL SER SEQRES 5 B 155 CYS ILE SER ILE ASP GLY ASN THR GLN SER TYR SER ASP SEQRES 6 B 155 SER VAL LYS GLY ARG PHE THR ILE SER ARG ASP THR ALA SEQRES 7 B 155 ASN ASN ARG VAL HIS LEU GLN MET ASN ASN LEU LYS PRO SEQRES 8 B 155 GLU ASP THR ALA VAL TYR TYR CYS ALA ALA ASP ARG TYR SEQRES 9 B 155 THR SER VAL ARG GLN MET CYS THR MET ILE GLU GLY LEU SEQRES 10 B 155 HIS ARG VAL TRP GLY GLN GLY THR GLN VAL THR VAL SER SEQRES 11 B 155 SER GLU PRO LYS THR PRO LYS PRO GLN PRO ARG GLN GLY SEQRES 12 B 155 ALA PRO VAL PRO TYR PRO ASP PRO LEU GLU PRO ARG SEQRES 1 A 289 GLY SER THR GLY SER HIS PRO VAL SER SER LEU THR MET SEQRES 2 A 289 LEU ASN ASP THR LEU HIS ASN ILE ARG THR THR ASN GLN SEQRES 3 A 289 ALA LEU LYS LYS GLU LEU SER GLN LYS THR LEU THR LYS SEQRES 4 A 289 THR SER LEU GLU GLU ILE ALA LEU HIS SER SER GLN ILE SEQRES 5 A 289 SER MET ASP VAL ASN LYS SER ALA GLN LEU LEU ASP ILE SEQRES 6 A 289 LEU SER ARG ASN GLU TYR PRO ILE ASN LYS ASP ALA ARG SEQRES 7 A 289 GLU LEU LEU HIS SER ALA PRO LYS GLU ALA GLU LEU ASP SEQRES 8 A 289 GLY ASP GLN MET ILE SER HIS ARG GLU LEU TRP ALA LYS SEQRES 9 A 289 ILE ALA ASN SER ILE ASN ASP ILE ASN GLU GLN TYR LEU SEQRES 10 A 289 LYS VAL TYR GLU HIS ALA VAL SER SER TYR THR GLN MET SEQRES 11 A 289 TYR GLN ASP PHE SER ALA VAL LEU SER SER LEU ALA GLY SEQRES 12 A 289 TRP ILE SER PRO GLY GLY ASN ASP GLY ASN SER VAL LYS SEQRES 13 A 289 LEU GLN VAL ASN SER LEU LYS LYS ALA LEU GLU GLU LEU SEQRES 14 A 289 LYS GLU LYS TYR LYS ASP LYS PRO LEU TYR PRO ALA ASN SEQRES 15 A 289 ASN THR VAL SER GLN GLU GLN ALA ASN LYS TRP LEU THR SEQRES 16 A 289 GLU LEU GLY GLY THR ILE GLY LYS VAL SER GLN LYS ASN SEQRES 17 A 289 GLY GLY TYR VAL VAL SER ILE ASN MET THR PRO ILE ASP SEQRES 18 A 289 ASN MET LEU LYS SER LEU ASP ASN LEU GLY GLY ASN GLY SEQRES 19 A 289 GLU VAL VAL LEU ASP ASN ALA LYS TYR GLN ALA TRP ASN SEQRES 20 A 289 ALA GLY PHE SER ALA GLU ASP GLU THR MET LYS ASN ASN SEQRES 21 A 289 LEU GLN THR LEU VAL GLN LYS TYR SER ASN ALA ASN SER SEQRES 22 A 289 ILE PHE ASP ASN LEU VAL LYS VAL LEU SER SER THR ILE SEQRES 23 A 289 SER SER SER FORMUL 3 HOH *17(H2 O) HELIX 1 AA1 THR B 28 GLN B 32 5 5 HELIX 2 AA2 LYS B 87 THR B 91 5 5 HELIX 3 AA3 ILE B 111 HIS B 115 5 5 HELIX 4 AA4 SER A 42 SER A 66 1 25 HELIX 5 AA5 THR A 71 GLU A 103 1 33 HELIX 6 AA6 ASN A 107 LEU A 113 1 7 HELIX 7 AA7 LEU A 114 ALA A 117 5 4 HELIX 8 AA8 PRO A 118 GLU A 122 5 5 HELIX 9 AA9 SER A 130 TYR A 149 1 20 HELIX 10 AB1 TYR A 149 SER A 173 1 25 HELIX 11 AB2 LEU A 174 GLY A 176 5 3 HELIX 12 AB3 VAL A 192 LYS A 207 1 16 HELIX 13 AB4 SER A 219 GLU A 229 1 11 HELIX 14 AB5 MET A 250 ASN A 262 1 13 HELIX 15 AB6 ASN A 273 SER A 321 1 49 SHEET 1 AA1 4 GLN B 3 SER B 7 0 SHEET 2 AA1 4 LEU B 18 SER B 25 -1 O ALA B 23 N VAL B 5 SHEET 3 AA1 4 ARG B 78 MET B 83 -1 O VAL B 79 N CYS B 22 SHEET 4 AA1 4 PHE B 68 ASP B 73 -1 N ASP B 73 O ARG B 78 SHEET 1 AA2 6 GLY B 10 LEU B 11 0 SHEET 2 AA2 6 THR B 122 THR B 125 1 O GLN B 123 N GLY B 10 SHEET 3 AA2 6 ALA B 92 ALA B 98 -1 N TYR B 94 O THR B 122 SHEET 4 AA2 6 ILE B 34 GLN B 39 -1 N PHE B 37 O TYR B 95 SHEET 5 AA2 6 GLU B 46 ILE B 51 -1 O VAL B 48 N TRP B 36 SHEET 6 AA2 6 GLN B 58 TYR B 60 -1 O SER B 59 N CYS B 50 SHEET 1 AA3 4 GLY B 10 LEU B 11 0 SHEET 2 AA3 4 THR B 122 THR B 125 1 O GLN B 123 N GLY B 10 SHEET 3 AA3 4 ALA B 92 ALA B 98 -1 N TYR B 94 O THR B 122 SHEET 4 AA3 4 VAL B 117 TRP B 118 -1 O VAL B 117 N ALA B 98 SHEET 1 AA4 3 ILE A 178 SER A 179 0 SHEET 2 AA4 3 SER A 187 GLN A 191 -1 O LYS A 189 N SER A 179 SHEET 3 AA4 3 GLU A 268 ASP A 272 -1 O LEU A 271 N VAL A 188 SHEET 1 AA5 3 PRO A 210 TYR A 212 0 SHEET 2 AA5 3 TYR A 244 ILE A 248 -1 O VAL A 246 N LEU A 211 SHEET 3 AA5 3 GLY A 235 GLN A 239 -1 N LYS A 236 O SER A 247 SSBOND 1 CYS B 22 CYS B 96 1555 1555 2.04 SSBOND 2 CYS B 50 CYS B 108 1555 1555 2.04 CISPEP 1 TYR A 212 PRO A 213 0 -7.67 CRYST1 56.641 107.913 174.319 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017655 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009267 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005737 0.00000