HEADER IMMUNE SYSTEM 23-MAY-17 5VXL TITLE 2.80 A RESOLUTION STRUCTURE OF IPAD FROM SHIGELLA FLEXNERI IN COMPLEX TITLE 2 WITH SINGLE-DOMAIN ANTIBODY JPS-G3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INVASIN IPAD; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 36 KDA MEMBRANE ANTIGEN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SINGLE-DOMAIN ANTIBODY JPS-G3; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 GENE: IPAD, CP0126; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 9 ORGANISM_TAXID: 30538; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIP PROTEIN, VHH, T3SS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.L.BARTA,S.LOVELL,K.P.BATTAILE,W.D.PICKING,W.L.PICKING REVDAT 2 04-OCT-23 5VXL 1 REMARK REVDAT 1 30-AUG-17 5VXL 0 JRNL AUTH M.L.BARTA,S.LOVELL,K.P.BATTAILE,W.D.PICKING,W.L.PICKING JRNL TITL 2.80 A RESOLUTION STRUCTURE OF IPAD FROM SHIGELLA FLEXNERI JRNL TITL 2 IN COMPLEX WITH SINGLE-DOMAIN ANTIBODY JPS-G3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2775 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.170 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 20098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8290 - 5.3544 0.99 2718 148 0.2073 0.2572 REMARK 3 2 5.3544 - 4.2508 1.00 2716 138 0.1604 0.2339 REMARK 3 3 4.2508 - 3.7137 1.00 2758 127 0.1592 0.2525 REMARK 3 4 3.7137 - 3.3742 1.00 2729 162 0.2000 0.2629 REMARK 3 5 3.3742 - 3.1324 1.00 2752 113 0.2388 0.3269 REMARK 3 6 3.1324 - 2.9478 1.00 2717 149 0.2663 0.3547 REMARK 3 7 2.9478 - 2.8002 0.99 2728 143 0.2872 0.3203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3030 REMARK 3 ANGLE : 0.419 4109 REMARK 3 CHIRALITY : 0.036 475 REMARK 3 PLANARITY : 0.002 529 REMARK 3 DIHEDRAL : 10.824 1831 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1276 85.7439 55.3300 REMARK 3 T TENSOR REMARK 3 T11: 0.2850 T22: 0.2800 REMARK 3 T33: 0.2112 T12: 0.0339 REMARK 3 T13: -0.0433 T23: 0.0578 REMARK 3 L TENSOR REMARK 3 L11: 0.0257 L22: 0.1514 REMARK 3 L33: 0.0442 L12: -0.0702 REMARK 3 L13: -0.0041 L23: -0.1201 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: 0.0443 S13: -0.0830 REMARK 3 S21: -0.0249 S22: 0.0039 S23: -0.0644 REMARK 3 S31: -0.0469 S32: -0.0851 S33: -0.0025 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1046 100.8761 25.0073 REMARK 3 T TENSOR REMARK 3 T11: 0.1421 T22: 0.1782 REMARK 3 T33: 0.1837 T12: 0.0356 REMARK 3 T13: 0.0142 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 0.1437 L22: 0.0722 REMARK 3 L33: 0.0740 L12: 0.0563 REMARK 3 L13: 0.0241 L23: -0.2054 REMARK 3 S TENSOR REMARK 3 S11: -0.1192 S12: 0.0199 S13: -0.0460 REMARK 3 S21: 0.0541 S22: 0.0563 S23: 0.0765 REMARK 3 S31: 0.0125 S32: -0.0832 S33: -0.0300 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 273 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4285 101.7900 38.0521 REMARK 3 T TENSOR REMARK 3 T11: 0.2510 T22: 0.1536 REMARK 3 T33: 0.2190 T12: -0.0202 REMARK 3 T13: -0.0663 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: -0.0502 L22: -0.0398 REMARK 3 L33: 0.0722 L12: 0.0200 REMARK 3 L13: -0.0431 L23: -0.1013 REMARK 3 S TENSOR REMARK 3 S11: -0.0214 S12: 0.0485 S13: -0.0084 REMARK 3 S21: 0.0327 S22: -0.0812 S23: -0.1052 REMARK 3 S31: 0.0223 S32: -0.0022 S33: -0.0192 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1540 84.9356 2.2243 REMARK 3 T TENSOR REMARK 3 T11: 0.1324 T22: 0.2299 REMARK 3 T33: 0.2081 T12: -0.0551 REMARK 3 T13: 0.0124 T23: -0.0543 REMARK 3 L TENSOR REMARK 3 L11: 0.0044 L22: 0.0012 REMARK 3 L33: 0.0049 L12: -0.0038 REMARK 3 L13: -0.0023 L23: 0.0020 REMARK 3 S TENSOR REMARK 3 S11: -0.0682 S12: 0.0382 S13: 0.0287 REMARK 3 S21: -0.1214 S22: 0.0796 S23: -0.0047 REMARK 3 S31: 0.0973 S32: 0.0513 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4350 68.3062 7.4089 REMARK 3 T TENSOR REMARK 3 T11: 0.2120 T22: 0.1950 REMARK 3 T33: 0.1907 T12: 0.0641 REMARK 3 T13: -0.0770 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.0068 L22: 0.0013 REMARK 3 L33: 0.0034 L12: -0.0024 REMARK 3 L13: 0.0040 L23: -0.0010 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: -0.0008 S13: 0.1060 REMARK 3 S21: 0.0628 S22: 0.0630 S23: 0.0080 REMARK 3 S31: 0.0331 S32: 0.0306 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2028 83.0216 9.7211 REMARK 3 T TENSOR REMARK 3 T11: 0.1615 T22: 0.1637 REMARK 3 T33: 0.1925 T12: 0.0471 REMARK 3 T13: -0.0395 T23: -0.0672 REMARK 3 L TENSOR REMARK 3 L11: 0.0211 L22: 0.1067 REMARK 3 L33: 0.1603 L12: 0.0653 REMARK 3 L13: -0.0691 L23: -0.1095 REMARK 3 S TENSOR REMARK 3 S11: 0.0251 S12: 0.1105 S13: -0.0972 REMARK 3 S21: -0.1185 S22: 0.1020 S23: -0.0136 REMARK 3 S31: 0.1481 S32: -0.0125 S33: 0.0358 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 40 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4911 77.1827 15.3348 REMARK 3 T TENSOR REMARK 3 T11: 0.2449 T22: 0.1952 REMARK 3 T33: 0.1696 T12: 0.1043 REMARK 3 T13: -0.1756 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 1.0775 L22: 0.1035 REMARK 3 L33: 0.2595 L12: -0.0196 REMARK 3 L13: -0.2100 L23: -0.1514 REMARK 3 S TENSOR REMARK 3 S11: -0.1716 S12: -0.0264 S13: -0.2061 REMARK 3 S21: 0.0729 S22: -0.0722 S23: -0.0754 REMARK 3 S31: -0.0943 S32: -0.1460 S33: -0.4037 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5059 80.5210 15.7490 REMARK 3 T TENSOR REMARK 3 T11: 0.2172 T22: 0.2116 REMARK 3 T33: 0.1543 T12: 0.0870 REMARK 3 T13: -0.0244 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 0.0502 L22: 0.0784 REMARK 3 L33: 0.0352 L12: 0.0039 REMARK 3 L13: -0.0071 L23: 0.0472 REMARK 3 S TENSOR REMARK 3 S11: 0.0849 S12: 0.0200 S13: -0.0722 REMARK 3 S21: 0.2854 S22: -0.0948 S23: -0.1277 REMARK 3 S31: 0.1099 S32: 0.1429 S33: 0.0382 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 85 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3083 74.6916 8.7596 REMARK 3 T TENSOR REMARK 3 T11: 0.1310 T22: 0.1301 REMARK 3 T33: 0.1686 T12: 0.0324 REMARK 3 T13: -0.0688 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 0.0225 L22: 0.0647 REMARK 3 L33: 0.1953 L12: 0.0135 REMARK 3 L13: -0.0638 L23: -0.0527 REMARK 3 S TENSOR REMARK 3 S11: 0.1038 S12: -0.1100 S13: -0.0610 REMARK 3 S21: -0.0609 S22: 0.0292 S23: -0.0245 REMARK 3 S31: 0.0356 S32: -0.1000 S33: 0.2117 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VXL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228101. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10958 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 47.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.20400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 1.09400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2J0O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 0.1 M TRIS-HCL REMARK 280 (PH 8.5), 30% (W/V) PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 27.88950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.78600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.88950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.78600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 34 REMARK 465 SER A 35 REMARK 465 THR A 36 REMARK 465 GLY A 37 REMARK 465 SER A 38 REMARK 465 HIS A 39 REMARK 465 ASP A 124 REMARK 465 GLY A 125 REMARK 465 ASP A 126 REMARK 465 GLN A 127 REMARK 465 GLY A 182 REMARK 465 ASN A 183 REMARK 465 ASP A 184 REMARK 465 GLY A 185 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 THR B 0 REMARK 465 SER B 117 REMARK 465 GLU B 118 REMARK 465 PRO B 119 REMARK 465 LYS B 120 REMARK 465 THR B 121 REMARK 465 PRO B 122 REMARK 465 LYS B 123 REMARK 465 PRO B 124 REMARK 465 GLN B 125 REMARK 465 PRO B 126 REMARK 465 ALA B 127 REMARK 465 ARG B 128 REMARK 465 GLN B 129 REMARK 465 GLY B 130 REMARK 465 ALA B 131 REMARK 465 PRO B 132 REMARK 465 VAL B 133 REMARK 465 PRO B 134 REMARK 465 TYR B 135 REMARK 465 PRO B 136 REMARK 465 ASP B 137 REMARK 465 PRO B 138 REMARK 465 LEU B 139 REMARK 465 GLU B 140 REMARK 465 PRO B 141 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 HIS A 115 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 128 CG SD CE REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 GLN A 220 CG CD OE1 NE2 REMARK 470 LYS A 236 CG CD CE NZ REMARK 470 GLN A 239 CG CD OE1 NE2 REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 ASN A 241 CG OD1 ND2 REMARK 470 LYS A 313 CD CE NZ REMARK 470 SER A 321 OG REMARK 470 SER A 322 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 66 73.49 -105.88 REMARK 500 TYR A 149 -65.44 -131.31 REMARK 500 ASN A 216 -158.81 60.98 REMARK 500 ASN A 241 -127.41 61.44 REMARK 500 ASN A 266 56.97 -119.39 REMARK 500 SER A 321 -62.35 -90.83 REMARK 500 TYR B 54 -129.70 63.75 REMARK 500 VAL B 65 -23.42 -143.74 REMARK 500 LYS B 78 60.63 61.25 REMARK 500 ARG B 102 -126.88 58.63 REMARK 500 REMARK 500 REMARK: NULL DBREF 5VXL A 39 322 UNP P18013 IPAD_SHIFL 39 322 DBREF 5VXL B -2 141 PDB 5VXL 5VXL -2 141 SEQADV 5VXL GLY A 34 UNP P18013 EXPRESSION TAG SEQADV 5VXL SER A 35 UNP P18013 EXPRESSION TAG SEQADV 5VXL THR A 36 UNP P18013 EXPRESSION TAG SEQADV 5VXL GLY A 37 UNP P18013 EXPRESSION TAG SEQADV 5VXL SER A 38 UNP P18013 EXPRESSION TAG SEQADV 5VXL SER A 322 UNP P18013 CYS 322 ENGINEERED MUTATION SEQRES 1 A 289 GLY SER THR GLY SER HIS PRO VAL SER SER LEU THR MET SEQRES 2 A 289 LEU ASN ASP THR LEU HIS ASN ILE ARG THR THR ASN GLN SEQRES 3 A 289 ALA LEU LYS LYS GLU LEU SER GLN LYS THR LEU THR LYS SEQRES 4 A 289 THR SER LEU GLU GLU ILE ALA LEU HIS SER SER GLN ILE SEQRES 5 A 289 SER MET ASP VAL ASN LYS SER ALA GLN LEU LEU ASP ILE SEQRES 6 A 289 LEU SER ARG ASN GLU TYR PRO ILE ASN LYS ASP ALA ARG SEQRES 7 A 289 GLU LEU LEU HIS SER ALA PRO LYS GLU ALA GLU LEU ASP SEQRES 8 A 289 GLY ASP GLN MET ILE SER HIS ARG GLU LEU TRP ALA LYS SEQRES 9 A 289 ILE ALA ASN SER ILE ASN ASP ILE ASN GLU GLN TYR LEU SEQRES 10 A 289 LYS VAL TYR GLU HIS ALA VAL SER SER TYR THR GLN MET SEQRES 11 A 289 TYR GLN ASP PHE SER ALA VAL LEU SER SER LEU ALA GLY SEQRES 12 A 289 TRP ILE SER PRO GLY GLY ASN ASP GLY ASN SER VAL LYS SEQRES 13 A 289 LEU GLN VAL ASN SER LEU LYS LYS ALA LEU GLU GLU LEU SEQRES 14 A 289 LYS GLU LYS TYR LYS ASP LYS PRO LEU TYR PRO ALA ASN SEQRES 15 A 289 ASN THR VAL SER GLN GLU GLN ALA ASN LYS TRP LEU THR SEQRES 16 A 289 GLU LEU GLY GLY THR ILE GLY LYS VAL SER GLN LYS ASN SEQRES 17 A 289 GLY GLY TYR VAL VAL SER ILE ASN MET THR PRO ILE ASP SEQRES 18 A 289 ASN MET LEU LYS SER LEU ASP ASN LEU GLY GLY ASN GLY SEQRES 19 A 289 GLU VAL VAL LEU ASP ASN ALA LYS TYR GLN ALA TRP ASN SEQRES 20 A 289 ALA GLY PHE SER ALA GLU ASP GLU THR MET LYS ASN ASN SEQRES 21 A 289 LEU GLN THR LEU VAL GLN LYS TYR SER ASN ALA ASN SER SEQRES 22 A 289 ILE PHE ASP ASN LEU VAL LYS VAL LEU SER SER THR ILE SEQRES 23 A 289 SER SER SER SEQRES 1 B 144 GLY SER THR GLN VAL GLN LEU ALA GLU SER GLY GLY GLY SEQRES 2 B 144 LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS SER SEQRES 3 B 144 ALA SER GLY GLY VAL PHE ILE ILE TYR ASN MET GLY TRP SEQRES 4 B 144 TYR ARG GLN ALA PRO GLY LYS GLN ARG GLU LEU VAL ALA SEQRES 5 B 144 SER ILE ASP SER TYR SER GLY SER ILE THR ASN TYR ALA SEQRES 6 B 144 ASP SER VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SEQRES 7 B 144 VAL GLU LYS ARG VAL TYR LEU GLU MET ASN ASN LEU LYS SEQRES 8 B 144 PRO GLU ASP THR ALA VAL TYR TYR CYS ASN ALA ASN LEU SEQRES 9 B 144 ARG THR ASN ASN TYR TRP GLY GLN GLY THR GLN VAL THR SEQRES 10 B 144 VAL SER SER GLU PRO LYS THR PRO LYS PRO GLN PRO ALA SEQRES 11 B 144 ARG GLN GLY ALA PRO VAL PRO TYR PRO ASP PRO LEU GLU SEQRES 12 B 144 PRO FORMUL 3 HOH *7(H2 O) HELIX 1 AA1 VAL A 41 SER A 66 1 26 HELIX 2 AA2 THR A 71 ASN A 102 1 32 HELIX 3 AA3 ASN A 107 GLU A 112 1 6 HELIX 4 AA4 LEU A 113 SER A 116 5 4 HELIX 5 AA5 PRO A 118 GLU A 122 5 5 HELIX 6 AA6 SER A 130 GLN A 148 1 19 HELIX 7 AA7 TYR A 149 SER A 173 1 25 HELIX 8 AA8 LEU A 174 GLY A 176 5 3 HELIX 9 AA9 VAL A 192 TYR A 206 1 15 HELIX 10 AB1 SER A 219 GLY A 231 1 13 HELIX 11 AB2 MET A 250 LEU A 263 1 14 HELIX 12 AB3 ASP A 272 SER A 322 1 51 HELIX 13 AB4 VAL B 28 TYR B 32 5 5 HELIX 14 AB5 LYS B 88 THR B 92 5 5 SHEET 1 AA1 3 ILE A 178 PRO A 180 0 SHEET 2 AA1 3 VAL A 188 GLN A 191 -1 O LYS A 189 N SER A 179 SHEET 3 AA1 3 GLU A 268 LEU A 271 -1 O LEU A 271 N VAL A 188 SHEET 1 AA2 2 GLY A 235 LYS A 240 0 SHEET 2 AA2 2 GLY A 243 ILE A 248 -1 O GLY A 243 N LYS A 240 SHEET 1 AA3 4 GLN B 3 SER B 7 0 SHEET 2 AA3 4 LEU B 18 SER B 25 -1 O SER B 21 N SER B 7 SHEET 3 AA3 4 ARG B 79 MET B 84 -1 O VAL B 80 N CYS B 22 SHEET 4 AA3 4 PHE B 69 ASP B 74 -1 N SER B 72 O TYR B 81 SHEET 1 AA4 6 GLY B 10 VAL B 12 0 SHEET 2 AA4 6 THR B 111 VAL B 115 1 O THR B 114 N VAL B 12 SHEET 3 AA4 6 ALA B 93 LEU B 101 -1 N TYR B 95 O THR B 111 SHEET 4 AA4 6 ASN B 33 GLN B 39 -1 N GLY B 35 O ASN B 98 SHEET 5 AA4 6 GLU B 46 ILE B 51 -1 O ILE B 51 N MET B 34 SHEET 6 AA4 6 THR B 59 TYR B 61 -1 O ASN B 60 N SER B 50 SHEET 1 AA5 4 GLY B 10 VAL B 12 0 SHEET 2 AA5 4 THR B 111 VAL B 115 1 O THR B 114 N VAL B 12 SHEET 3 AA5 4 ALA B 93 LEU B 101 -1 N TYR B 95 O THR B 111 SHEET 4 AA5 4 ASN B 104 TRP B 107 -1 O TYR B 106 N ALA B 99 CISPEP 1 TYR A 212 PRO A 213 0 -2.99 CRYST1 55.779 81.572 92.906 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017928 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012259 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010764 0.00000