HEADER IMMUNE SYSTEM 23-MAY-17 5VXM TITLE 2.05 A RESOLUTION STRUCTURE OF IPAD FROM SHIGELLA FLEXNERI IN COMPLEX TITLE 2 WITH SINGLE-DOMAIN ANTIBODY 20IPAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: INVASIN IPAD; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 36 KDA MEMBRANE ANTIGEN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SINGLE-DOMAIN ANTIBODY 20IPAD; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 GENE: IPAD, CP0126; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 9 ORGANISM_TAXID: 30538; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIP PROTEIN, VHH, T3SS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.L.BARTA,S.LOVELL,K.P.BATTAILE,W.D.PICKING,W.L.PICKING REVDAT 2 04-OCT-23 5VXM 1 REMARK REVDAT 1 30-AUG-17 5VXM 0 JRNL AUTH M.L.BARTA,S.LOVELL,K.P.BATTAILE,W.D.PICKING,W.L.PICKING JRNL TITL 2.05 A RESOLUTION STRUCTURE OF IPAD FROM SHIGELLA FLEXNERI JRNL TITL 2 IN COMPLEX WITH SINGLE-DOMAIN ANTIBODY 20IPAD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2846 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.3757 - 4.4138 1.00 2859 133 0.1993 0.2509 REMARK 3 2 4.4138 - 3.5045 1.00 2718 161 0.1827 0.1994 REMARK 3 3 3.5045 - 3.0618 1.00 2702 144 0.2027 0.2450 REMARK 3 4 3.0618 - 2.7820 1.00 2697 130 0.2228 0.2888 REMARK 3 5 2.7820 - 2.5827 1.00 2728 111 0.2261 0.2520 REMARK 3 6 2.5827 - 2.4304 1.00 2643 150 0.2281 0.2720 REMARK 3 7 2.4304 - 2.3087 1.00 2698 130 0.2280 0.2835 REMARK 3 8 2.3087 - 2.2083 1.00 2685 124 0.2444 0.2404 REMARK 3 9 2.2083 - 2.1233 1.00 2656 122 0.2603 0.2701 REMARK 3 10 2.1233 - 2.0500 1.00 2673 151 0.2859 0.3486 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2728 REMARK 3 ANGLE : 0.457 3705 REMARK 3 CHIRALITY : 0.036 437 REMARK 3 PLANARITY : 0.002 479 REMARK 3 DIHEDRAL : 11.377 1629 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5319 6.2985 -6.4541 REMARK 3 T TENSOR REMARK 3 T11: 0.6130 T22: 0.6845 REMARK 3 T33: 0.3014 T12: 0.1401 REMARK 3 T13: -0.0577 T23: -0.2121 REMARK 3 L TENSOR REMARK 3 L11: 0.1872 L22: 0.3658 REMARK 3 L33: 0.2279 L12: -0.0658 REMARK 3 L13: -0.2904 L23: 0.0296 REMARK 3 S TENSOR REMARK 3 S11: -0.1358 S12: -0.2427 S13: -0.0356 REMARK 3 S21: 0.0347 S22: -0.1322 S23: 0.1931 REMARK 3 S31: -0.1761 S32: -0.0063 S33: -0.4339 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0243 -3.7483 -28.5622 REMARK 3 T TENSOR REMARK 3 T11: 0.2834 T22: 0.2508 REMARK 3 T33: 0.2823 T12: -0.0353 REMARK 3 T13: -0.0204 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.9340 L22: 0.6202 REMARK 3 L33: 0.5502 L12: -0.3291 REMARK 3 L13: 0.0820 L23: -0.2124 REMARK 3 S TENSOR REMARK 3 S11: -0.0238 S12: -0.0127 S13: 0.0671 REMARK 3 S21: 0.0287 S22: -0.0030 S23: -0.1920 REMARK 3 S31: -0.0758 S32: -0.1209 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0553 -37.8903 -30.3725 REMARK 3 T TENSOR REMARK 3 T11: 0.3760 T22: 0.3939 REMARK 3 T33: 0.4378 T12: -0.1045 REMARK 3 T13: 0.0437 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.2462 L22: 0.2145 REMARK 3 L33: 0.2450 L12: 0.0414 REMARK 3 L13: 0.1858 L23: -0.1364 REMARK 3 S TENSOR REMARK 3 S11: -0.3901 S12: -0.1235 S13: -0.0753 REMARK 3 S21: 0.2121 S22: -0.3260 S23: 0.1520 REMARK 3 S31: 0.1664 S32: -0.1310 S33: -0.0105 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4557 -23.6673 -20.9276 REMARK 3 T TENSOR REMARK 3 T11: 0.4284 T22: 0.4711 REMARK 3 T33: 0.3601 T12: -0.1046 REMARK 3 T13: 0.0159 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.0084 L22: 0.0069 REMARK 3 L33: 0.0125 L12: -0.0128 REMARK 3 L13: -0.0123 L23: 0.0092 REMARK 3 S TENSOR REMARK 3 S11: -0.1658 S12: -0.0928 S13: -0.4728 REMARK 3 S21: 0.0989 S22: -0.1851 S23: 0.2844 REMARK 3 S31: 0.0244 S32: 0.1028 S33: -0.0005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 34 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3386 -38.0021 -34.5515 REMARK 3 T TENSOR REMARK 3 T11: 0.3561 T22: 0.2980 REMARK 3 T33: 0.6986 T12: -0.0685 REMARK 3 T13: 0.0023 T23: 0.0822 REMARK 3 L TENSOR REMARK 3 L11: 0.0211 L22: -0.0056 REMARK 3 L33: 0.1345 L12: 0.0293 REMARK 3 L13: -0.0538 L23: 0.0133 REMARK 3 S TENSOR REMARK 3 S11: -0.0391 S12: -0.0924 S13: -0.7398 REMARK 3 S21: -0.0817 S22: -0.3348 S23: -0.8530 REMARK 3 S31: -0.0805 S32: 0.0788 S33: -0.0092 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 46 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6224 -23.9276 -34.4255 REMARK 3 T TENSOR REMARK 3 T11: 0.2875 T22: 0.3333 REMARK 3 T33: 0.3503 T12: -0.0259 REMARK 3 T13: -0.0150 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 0.0093 L22: 0.0349 REMARK 3 L33: -0.0459 L12: 0.0826 REMARK 3 L13: -0.0867 L23: -0.0161 REMARK 3 S TENSOR REMARK 3 S11: 0.0875 S12: -0.1189 S13: 0.1285 REMARK 3 S21: -0.1839 S22: -0.1600 S23: -0.0994 REMARK 3 S31: -0.1585 S32: 0.0711 S33: -0.0001 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 61 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7909 -28.9943 -34.2300 REMARK 3 T TENSOR REMARK 3 T11: 0.3077 T22: 0.3740 REMARK 3 T33: 0.2668 T12: -0.0148 REMARK 3 T13: -0.0073 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.3085 L22: 0.2344 REMARK 3 L33: 0.0623 L12: 0.1049 REMARK 3 L13: 0.0749 L23: -0.1048 REMARK 3 S TENSOR REMARK 3 S11: -0.0187 S12: 0.0507 S13: 0.0135 REMARK 3 S21: 0.0901 S22: 0.0115 S23: 0.2173 REMARK 3 S31: -0.6177 S32: -0.1255 S33: -0.0007 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3217 -37.9335 -37.4278 REMARK 3 T TENSOR REMARK 3 T11: 0.2992 T22: 0.2960 REMARK 3 T33: 0.3236 T12: -0.0582 REMARK 3 T13: 0.0353 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.1647 L22: -0.0042 REMARK 3 L33: 0.0441 L12: 0.0973 REMARK 3 L13: -0.0560 L23: -0.0564 REMARK 3 S TENSOR REMARK 3 S11: -0.2595 S12: 0.0243 S13: -0.3013 REMARK 3 S21: -0.1048 S22: -0.1086 S23: -0.3297 REMARK 3 S31: -0.1214 S32: 0.1696 S33: -0.0019 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0267 -22.8328 -31.3311 REMARK 3 T TENSOR REMARK 3 T11: 0.3677 T22: 0.2770 REMARK 3 T33: 0.3774 T12: -0.0623 REMARK 3 T13: -0.0935 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.0103 L22: 0.0335 REMARK 3 L33: 0.0144 L12: 0.0178 REMARK 3 L13: 0.0309 L23: 0.0113 REMARK 3 S TENSOR REMARK 3 S11: 0.2419 S12: -0.2146 S13: -0.5395 REMARK 3 S21: 0.2618 S22: -0.4737 S23: -0.0682 REMARK 3 S31: 0.0400 S32: -0.1747 S33: -0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4878 -38.4948 -32.3806 REMARK 3 T TENSOR REMARK 3 T11: 0.3041 T22: 0.3023 REMARK 3 T33: 0.5408 T12: -0.0979 REMARK 3 T13: -0.0119 T23: 0.0576 REMARK 3 L TENSOR REMARK 3 L11: 0.0170 L22: 0.6242 REMARK 3 L33: 0.4479 L12: -0.0308 REMARK 3 L13: -0.1653 L23: 0.1351 REMARK 3 S TENSOR REMARK 3 S11: 0.0132 S12: -0.1593 S13: -0.4808 REMARK 3 S21: 0.1043 S22: -0.2340 S23: -0.8732 REMARK 3 S31: 0.0805 S32: -0.2132 S33: -0.0609 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VXM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228098. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28469 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 47.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 1.03600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2J0O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID (PH 3.5), 25 % (W/V) REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.80450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 90.80450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.32100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.75350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.32100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.75350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 90.80450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.32100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.75350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 90.80450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.32100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.75350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 34 REMARK 465 SER A 35 REMARK 465 THR A 36 REMARK 465 GLY A 37 REMARK 465 SER A 38 REMARK 465 HIS A 39 REMARK 465 PRO A 40 REMARK 465 VAL A 41 REMARK 465 ASP A 97 REMARK 465 ILE A 98 REMARK 465 LEU A 99 REMARK 465 SER A 100 REMARK 465 ARG A 101 REMARK 465 ASN A 102 REMARK 465 GLU A 103 REMARK 465 TYR A 104 REMARK 465 PRO A 105 REMARK 465 ILE A 106 REMARK 465 ASN A 107 REMARK 465 LYS A 108 REMARK 465 ASP A 109 REMARK 465 SER A 116 REMARK 465 ALA A 117 REMARK 465 PRO A 118 REMARK 465 GLU A 122 REMARK 465 LEU A 123 REMARK 465 ASP A 124 REMARK 465 GLY A 125 REMARK 465 ASP A 126 REMARK 465 GLN A 127 REMARK 465 MET A 128 REMARK 465 ILE A 129 REMARK 465 SER A 130 REMARK 465 HIS A 131 REMARK 465 ARG A 132 REMARK 465 GLU A 133 REMARK 465 LEU A 134 REMARK 465 TRP A 135 REMARK 465 ALA A 136 REMARK 465 GLY A 182 REMARK 465 ASN A 183 REMARK 465 ASP A 184 REMARK 465 GLY A 185 REMARK 465 ASN A 186 REMARK 465 SER A 321 REMARK 465 SER A 322 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 THR B 0 REMARK 465 GLN B 1 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 SER B 129 REMARK 465 GLU B 130 REMARK 465 ASP B 131 REMARK 465 PRO B 132 REMARK 465 SER B 133 REMARK 465 ALA B 134 REMARK 465 ARG B 135 REMARK 465 GLN B 136 REMARK 465 GLY B 137 REMARK 465 ALA B 138 REMARK 465 PRO B 139 REMARK 465 VAL B 140 REMARK 465 PRO B 141 REMARK 465 TYR B 142 REMARK 465 PRO B 143 REMARK 465 ASP B 144 REMARK 465 PRO B 145 REMARK 465 LEU B 146 REMARK 465 GLU B 147 REMARK 465 PRO B 148 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 GLN A 67 CG CD OE1 NE2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 THR A 69 OG1 CG2 REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 THR A 73 OG1 CG2 REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 GLN A 94 CG CD OE1 NE2 REMARK 470 LEU A 95 CG CD1 CD2 REMARK 470 ARG A 111 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 112 CG CD OE1 OE2 REMARK 470 LEU A 113 CG CD1 CD2 REMARK 470 HIS A 115 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 ILE A 138 CG1 CG2 CD1 REMARK 470 ASN A 140 CG OD1 ND2 REMARK 470 ILE A 145 CG1 CG2 CD1 REMARK 470 GLN A 148 CG CD OE1 NE2 REMARK 470 TYR A 149 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 150 CG CD1 CD2 REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 LYS A 225 CG CD CE NZ REMARK 470 GLU A 268 CG CD OE1 OE2 REMARK 470 LEU A 311 CG CD1 CD2 REMARK 470 SER A 316 OG REMARK 470 ILE A 319 CG1 CG2 CD1 REMARK 470 SER A 320 OG REMARK 470 SER B 25 OG REMARK 470 GLU B 28 CG CD OE1 OE2 REMARK 470 GLN B 30 CG CD OE1 NE2 REMARK 470 LYS B 43 CG CD CE NZ REMARK 470 GLU B 44 CG CD OE1 OE2 REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 GLN B 117 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 141 -32.90 -132.66 REMARK 500 TYR A 149 -65.55 -163.29 REMARK 500 ASN A 216 -149.22 63.93 REMARK 500 GLU B 28 92.22 -61.16 REMARK 500 ALA B 92 166.47 175.99 REMARK 500 SER B 105 -158.88 55.27 REMARK 500 REMARK 500 REMARK: NULL DBREF 5VXM A 39 322 UNP P18013 IPAD_SHIFL 39 322 DBREF 5VXM B -2 148 PDB 5VXM 5VXM -2 148 SEQADV 5VXM GLY A 34 UNP P18013 EXPRESSION TAG SEQADV 5VXM SER A 35 UNP P18013 EXPRESSION TAG SEQADV 5VXM THR A 36 UNP P18013 EXPRESSION TAG SEQADV 5VXM GLY A 37 UNP P18013 EXPRESSION TAG SEQADV 5VXM SER A 38 UNP P18013 EXPRESSION TAG SEQADV 5VXM SER A 322 UNP P18013 CYS 322 ENGINEERED MUTATION SEQRES 1 A 289 GLY SER THR GLY SER HIS PRO VAL SER SER LEU THR MET SEQRES 2 A 289 LEU ASN ASP THR LEU HIS ASN ILE ARG THR THR ASN GLN SEQRES 3 A 289 ALA LEU LYS LYS GLU LEU SER GLN LYS THR LEU THR LYS SEQRES 4 A 289 THR SER LEU GLU GLU ILE ALA LEU HIS SER SER GLN ILE SEQRES 5 A 289 SER MET ASP VAL ASN LYS SER ALA GLN LEU LEU ASP ILE SEQRES 6 A 289 LEU SER ARG ASN GLU TYR PRO ILE ASN LYS ASP ALA ARG SEQRES 7 A 289 GLU LEU LEU HIS SER ALA PRO LYS GLU ALA GLU LEU ASP SEQRES 8 A 289 GLY ASP GLN MET ILE SER HIS ARG GLU LEU TRP ALA LYS SEQRES 9 A 289 ILE ALA ASN SER ILE ASN ASP ILE ASN GLU GLN TYR LEU SEQRES 10 A 289 LYS VAL TYR GLU HIS ALA VAL SER SER TYR THR GLN MET SEQRES 11 A 289 TYR GLN ASP PHE SER ALA VAL LEU SER SER LEU ALA GLY SEQRES 12 A 289 TRP ILE SER PRO GLY GLY ASN ASP GLY ASN SER VAL LYS SEQRES 13 A 289 LEU GLN VAL ASN SER LEU LYS LYS ALA LEU GLU GLU LEU SEQRES 14 A 289 LYS GLU LYS TYR LYS ASP LYS PRO LEU TYR PRO ALA ASN SEQRES 15 A 289 ASN THR VAL SER GLN GLU GLN ALA ASN LYS TRP LEU THR SEQRES 16 A 289 GLU LEU GLY GLY THR ILE GLY LYS VAL SER GLN LYS ASN SEQRES 17 A 289 GLY GLY TYR VAL VAL SER ILE ASN MET THR PRO ILE ASP SEQRES 18 A 289 ASN MET LEU LYS SER LEU ASP ASN LEU GLY GLY ASN GLY SEQRES 19 A 289 GLU VAL VAL LEU ASP ASN ALA LYS TYR GLN ALA TRP ASN SEQRES 20 A 289 ALA GLY PHE SER ALA GLU ASP GLU THR MET LYS ASN ASN SEQRES 21 A 289 LEU GLN THR LEU VAL GLN LYS TYR SER ASN ALA ASN SER SEQRES 22 A 289 ILE PHE ASP ASN LEU VAL LYS VAL LEU SER SER THR ILE SEQRES 23 A 289 SER SER SER SEQRES 1 B 151 GLY SER THR GLN VAL GLN LEU VAL GLU SER GLY GLY GLY SEQRES 2 B 151 LEU VAL GLN ALA GLY GLY SER LEU ARG LEU SER CYS ALA SEQRES 3 B 151 VAL SER GLY LEU GLU MET GLN SER HIS ALA ILE GLY TRP SEQRES 4 B 151 PHE ARG GLN ALA PRO GLY LYS GLU ARG GLU GLY VAL SER SEQRES 5 B 151 CYS ILE ASN ASP ASP GLY SER THR THR ARG TYR ALA ASP SEQRES 6 B 151 SER VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA SEQRES 7 B 151 LYS ASN THR VAL TYR LEU GLN MET ASN SER LEU LYS PRO SEQRES 8 B 151 GLU ASP THR ALA VAL TYR PHE CYS ALA ALA LYS SER VAL SEQRES 9 B 151 TRP PHE CYS SER VAL ILE ARG SER HIS GLU PHE ASN SER SEQRES 10 B 151 TRP GLY GLN GLY THR GLN VAL THR VAL SER SER ALA HIS SEQRES 11 B 151 HIS SER GLU ASP PRO SER ALA ARG GLN GLY ALA PRO VAL SEQRES 12 B 151 PRO TYR PRO ASP PRO LEU GLU PRO FORMUL 3 HOH *68(H2 O) HELIX 1 AA1 SER A 42 SER A 66 1 25 HELIX 2 AA2 THR A 71 LEU A 96 1 26 HELIX 3 AA3 ARG A 111 HIS A 115 1 5 HELIX 4 AA4 ILE A 138 GLN A 148 1 11 HELIX 5 AA5 TYR A 149 SER A 173 1 25 HELIX 6 AA6 LEU A 174 GLY A 176 5 3 HELIX 7 AA7 GLN A 191 TYR A 206 1 16 HELIX 8 AA8 SER A 219 GLY A 231 1 13 HELIX 9 AA9 MET A 250 ASN A 262 1 13 HELIX 10 AB1 ASP A 272 ILE A 319 1 48 HELIX 11 AB2 GLU B 28 HIS B 32 5 5 HELIX 12 AB3 LYS B 87 THR B 91 5 5 HELIX 13 AB4 ARG B 108 PHE B 112 5 5 SHEET 1 AA1 3 ILE A 178 SER A 179 0 SHEET 2 AA1 3 VAL A 188 LEU A 190 -1 O LYS A 189 N SER A 179 SHEET 3 AA1 3 VAL A 269 LEU A 271 -1 O LEU A 271 N VAL A 188 SHEET 1 AA2 2 GLY A 235 LYS A 240 0 SHEET 2 AA2 2 GLY A 243 ILE A 248 -1 O SER A 247 N LYS A 236 SHEET 1 AA3 4 GLN B 3 SER B 7 0 SHEET 2 AA3 4 LEU B 18 SER B 25 -1 O SER B 25 N GLN B 3 SHEET 3 AA3 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 AA3 4 PHE B 68 ASP B 73 -1 N SER B 71 O TYR B 80 SHEET 1 AA4 6 GLY B 10 GLN B 13 0 SHEET 2 AA4 6 THR B 119 SER B 124 1 O THR B 122 N GLY B 10 SHEET 3 AA4 6 ALA B 92 ALA B 98 -1 N TYR B 94 O THR B 119 SHEET 4 AA4 6 ILE B 34 GLN B 39 -1 N GLY B 35 O ALA B 97 SHEET 5 AA4 6 GLU B 46 ILE B 51 -1 O SER B 49 N TRP B 36 SHEET 6 AA4 6 THR B 58 TYR B 60 -1 O ARG B 59 N CYS B 50 SHEET 1 AA5 4 GLY B 10 GLN B 13 0 SHEET 2 AA5 4 THR B 119 SER B 124 1 O THR B 122 N GLY B 10 SHEET 3 AA5 4 ALA B 92 ALA B 98 -1 N TYR B 94 O THR B 119 SHEET 4 AA5 4 SER B 114 TRP B 115 -1 O SER B 114 N ALA B 98 SSBOND 1 CYS B 22 CYS B 96 1555 1555 2.03 SSBOND 2 CYS B 50 CYS B 104 1555 1555 2.04 CISPEP 1 TYR A 212 PRO A 213 0 -4.14 CRYST1 58.642 83.507 181.609 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017053 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011975 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005506 0.00000