HEADER OXIDOREDUCTASE 24-MAY-17 5VXT TITLE CRYSTAL STRUCTURE OF CATECHOL 1,2-DIOXYGENASE FROM BURKHOLDERIA TITLE 2 AMBIFARIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATECHOL 1,2-DIOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BUAMA.00117.B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA AMBIFARIA (STRAIN MC40-6); SOURCE 3 ORGANISM_TAXID: 398577; SOURCE 4 STRAIN: MC40-6; SOURCE 5 GENE: BAMMC406_6300; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SSGCID, BURKHOLDERIA AMBIFARIA, CATECHOL 1, 2-DIOXYGENASE, CATECHOL, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 04-OCT-23 5VXT 1 LINK REVDAT 1 14-JUN-17 5VXT 0 JRNL AUTH J.N.PHAN,D.M.DRANOW,D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF CATECHOL 1,2-DIOXYGENASE FROM JRNL TITL 2 BURKHOLDERIA AMBIFARIA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2744 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 69477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.650 REMARK 3 FREE R VALUE TEST SET COUNT : 1838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8294 - 4.1138 1.00 5359 142 0.1580 0.1746 REMARK 3 2 4.1138 - 3.2655 1.00 5259 147 0.1533 0.1929 REMARK 3 3 3.2655 - 2.8528 1.00 5242 140 0.1765 0.2260 REMARK 3 4 2.8528 - 2.5920 1.00 5218 138 0.1890 0.2420 REMARK 3 5 2.5920 - 2.4062 1.00 5178 156 0.1938 0.2173 REMARK 3 6 2.4062 - 2.2643 1.00 5184 148 0.1929 0.2444 REMARK 3 7 2.2643 - 2.1509 1.00 5195 125 0.2069 0.2306 REMARK 3 8 2.1509 - 2.0573 1.00 5206 111 0.2086 0.2240 REMARK 3 9 2.0573 - 1.9781 1.00 5205 156 0.2219 0.2707 REMARK 3 10 1.9781 - 1.9098 1.00 5161 132 0.2265 0.2974 REMARK 3 11 1.9098 - 1.8501 1.00 5163 158 0.2394 0.2927 REMARK 3 12 1.8501 - 1.7972 1.00 5141 141 0.2659 0.3374 REMARK 3 13 1.7972 - 1.7499 0.99 5128 144 0.2771 0.3309 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5032 REMARK 3 ANGLE : 0.778 6823 REMARK 3 CHIRALITY : 0.051 736 REMARK 3 PLANARITY : 0.004 907 REMARK 3 DIHEDRAL : 15.427 2992 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -3 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0411 -18.2216 34.3359 REMARK 3 T TENSOR REMARK 3 T11: 0.5090 T22: 0.1923 REMARK 3 T33: 0.1520 T12: 0.0327 REMARK 3 T13: -0.0545 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 4.4900 L22: 2.4727 REMARK 3 L33: 1.2230 L12: 1.8737 REMARK 3 L13: 1.3804 L23: -0.4545 REMARK 3 S TENSOR REMARK 3 S11: 0.1024 S12: 0.1114 S13: -0.1103 REMARK 3 S21: 0.0693 S22: -0.0118 S23: -0.1327 REMARK 3 S31: 0.2204 S32: 0.3160 S33: -0.1047 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0170 -13.2216 31.4048 REMARK 3 T TENSOR REMARK 3 T11: 0.3411 T22: 0.1052 REMARK 3 T33: 0.1309 T12: 0.0168 REMARK 3 T13: -0.0195 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.6079 L22: 1.0942 REMARK 3 L33: 2.4200 L12: -0.1159 REMARK 3 L13: 1.0181 L23: -0.2091 REMARK 3 S TENSOR REMARK 3 S11: -0.0220 S12: -0.0078 S13: 0.0078 REMARK 3 S21: 0.3185 S22: 0.0778 S23: -0.0223 REMARK 3 S31: 0.2227 S32: 0.0836 S33: -0.0587 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1653 -6.6172 12.5914 REMARK 3 T TENSOR REMARK 3 T11: 0.1299 T22: 0.1414 REMARK 3 T33: 0.1919 T12: 0.0079 REMARK 3 T13: -0.0310 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 2.0314 L22: 1.6386 REMARK 3 L33: 3.9899 L12: -0.3959 REMARK 3 L13: 0.0080 L23: 0.4426 REMARK 3 S TENSOR REMARK 3 S11: 0.0686 S12: 0.1548 S13: -0.0695 REMARK 3 S21: 0.0561 S22: 0.0709 S23: -0.0711 REMARK 3 S31: 0.1973 S32: 0.0615 S33: -0.1200 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5886 -2.6144 6.7814 REMARK 3 T TENSOR REMARK 3 T11: 0.0992 T22: 0.3085 REMARK 3 T33: 0.2134 T12: -0.0162 REMARK 3 T13: 0.0106 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 1.4161 L22: 1.1904 REMARK 3 L33: 0.9483 L12: 0.1846 REMARK 3 L13: 0.9324 L23: -0.2877 REMARK 3 S TENSOR REMARK 3 S11: 0.0605 S12: 0.0756 S13: -0.0574 REMARK 3 S21: 0.1001 S22: 0.0510 S23: 0.2100 REMARK 3 S31: 0.0814 S32: -0.4371 S33: -0.0730 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8988 0.2127 10.9974 REMARK 3 T TENSOR REMARK 3 T11: 0.1177 T22: 0.2808 REMARK 3 T33: 0.2317 T12: 0.0112 REMARK 3 T13: 0.0434 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 1.3842 L22: 0.9676 REMARK 3 L33: 0.9800 L12: -0.1666 REMARK 3 L13: 0.5539 L23: -0.2272 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: -0.0913 S13: 0.0575 REMARK 3 S21: 0.1048 S22: 0.0319 S23: 0.2300 REMARK 3 S31: 0.0145 S32: -0.5087 S33: -0.0397 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 237 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4314 5.4867 3.6641 REMARK 3 T TENSOR REMARK 3 T11: 0.1056 T22: 0.2368 REMARK 3 T33: 0.2221 T12: 0.0198 REMARK 3 T13: 0.0175 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 1.3177 L22: 0.7211 REMARK 3 L33: 1.3054 L12: -0.3693 REMARK 3 L13: 0.5752 L23: -0.2545 REMARK 3 S TENSOR REMARK 3 S11: -0.0230 S12: 0.1195 S13: 0.1523 REMARK 3 S21: 0.0573 S22: 0.0257 S23: 0.1246 REMARK 3 S31: -0.1264 S32: -0.2262 S33: 0.0467 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 297 THROUGH 315 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6954 -15.7461 4.6765 REMARK 3 T TENSOR REMARK 3 T11: 0.2301 T22: 0.1777 REMARK 3 T33: 0.2564 T12: -0.0181 REMARK 3 T13: -0.0625 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 4.0879 L22: 3.3539 REMARK 3 L33: 4.4508 L12: -1.7569 REMARK 3 L13: -1.3907 L23: 0.2585 REMARK 3 S TENSOR REMARK 3 S11: 0.1768 S12: 0.1999 S13: -0.2992 REMARK 3 S21: -0.0580 S22: -0.0772 S23: -0.0490 REMARK 3 S31: 0.6031 S32: -0.0275 S33: 0.1146 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -3 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3627 -5.3911 14.3946 REMARK 3 T TENSOR REMARK 3 T11: 0.1081 T22: 0.2375 REMARK 3 T33: 0.2176 T12: -0.0197 REMARK 3 T13: -0.0558 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 2.3362 L22: 3.1510 REMARK 3 L33: 4.9408 L12: -1.7468 REMARK 3 L13: -2.1549 L23: 0.7739 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: 0.2324 S13: 0.0369 REMARK 3 S21: -0.0058 S22: 0.0760 S23: -0.2931 REMARK 3 S31: -0.0437 S32: 0.2935 S33: -0.1424 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 34 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6455 -13.2417 30.0479 REMARK 3 T TENSOR REMARK 3 T11: 0.2771 T22: 0.1097 REMARK 3 T33: 0.1623 T12: 0.0209 REMARK 3 T13: -0.0267 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.9715 L22: 0.9452 REMARK 3 L33: 2.0732 L12: -0.1061 REMARK 3 L13: 0.9019 L23: -0.6433 REMARK 3 S TENSOR REMARK 3 S11: 0.0420 S12: -0.0148 S13: -0.0361 REMARK 3 S21: 0.2349 S22: 0.0482 S23: 0.0287 REMARK 3 S31: 0.1688 S32: 0.0326 S33: -0.0916 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2627 -24.4180 54.2224 REMARK 3 T TENSOR REMARK 3 T11: 0.6359 T22: 0.2640 REMARK 3 T33: 0.2463 T12: 0.0369 REMARK 3 T13: -0.0088 T23: 0.0827 REMARK 3 L TENSOR REMARK 3 L11: 1.1558 L22: 0.8707 REMARK 3 L33: 1.7516 L12: -0.2599 REMARK 3 L13: 0.4984 L23: -0.4850 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: -0.3343 S13: -0.1649 REMARK 3 S21: 0.3325 S22: 0.2156 S23: 0.1841 REMARK 3 S31: 0.0218 S32: -0.2415 S33: -0.1574 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VXT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000228120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69508 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.216 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.54600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.730 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1DMH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG1 C8 (274672C8): 200MM AMMONIUM REMARK 280 SULFATE, 100MM SODIUM CITRATE: HCL, PH5.6, 25% (W/V) PEG4000, REMARK 280 PROTEIN CONC. 20.3MG/ML, CRYO 20% ETHYLENE GLYCOL: KSJ9-7, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.10000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 THR A 23 REMARK 465 ASN A 24 REMARK 465 GLY A 25 REMARK 465 ALA A 26 REMARK 465 ASN A 27 REMARK 465 GLY A 28 REMARK 465 THR A 29 REMARK 465 GLN A 30 REMARK 465 THR A 316 REMARK 465 ALA A 317 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 THR B 23 REMARK 465 ASN B 24 REMARK 465 GLY B 25 REMARK 465 ALA B 26 REMARK 465 ASN B 27 REMARK 465 GLY B 28 REMARK 465 THR B 29 REMARK 465 GLN B 30 REMARK 465 ALA B 317 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 GLU B 135 CG CD OE1 OE2 REMARK 470 LYS B 152 CG CD CE NZ REMARK 470 LYS B 178 CG CD CE NZ REMARK 470 LYS B 189 CG CD CE NZ REMARK 470 LYS B 303 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 502 O HOH A 523 1.91 REMARK 500 O HOH A 722 O HOH A 778 2.13 REMARK 500 OG SER B 314 O HOH B 501 2.18 REMARK 500 OD1 ASN A 293 O HOH A 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 172 -4.80 75.82 REMARK 500 HIS A 172 -11.13 81.23 REMARK 500 THR A 200 -159.35 -149.63 REMARK 500 ASP A 257 50.28 -148.06 REMARK 500 HIS B 172 -10.70 75.41 REMARK 500 ASP B 257 50.04 -148.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 869 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 870 DISTANCE = 6.89 ANGSTROMS REMARK 525 HOH B 746 DISTANCE = 6.24 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 170 OH REMARK 620 2 HIS A 230 NE2 93.1 REMARK 620 3 HIS A 232 NE2 111.7 102.8 REMARK 620 4 CAQ A 403 O3 108.7 116.7 120.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 170 OH REMARK 620 2 HIS B 230 NE2 92.0 REMARK 620 3 HIS B 232 NE2 116.6 94.6 REMARK 620 4 CAQ B 403 O3 98.1 122.6 128.4 REMARK 620 5 CAQ B 403 O4 167.0 89.0 76.2 70.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PTY A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAQ A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PTY B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAQ B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUAMA.00117.B RELATED DB: TARGETTRACK DBREF 5VXT A 1 317 UNP B1Z4S0 B1Z4S0_BURA4 1 317 DBREF 5VXT B 1 317 UNP B1Z4S0 B1Z4S0_BURA4 1 317 SEQADV 5VXT MET A -7 UNP B1Z4S0 EXPRESSION TAG SEQADV 5VXT ALA A -6 UNP B1Z4S0 EXPRESSION TAG SEQADV 5VXT HIS A -5 UNP B1Z4S0 EXPRESSION TAG SEQADV 5VXT HIS A -4 UNP B1Z4S0 EXPRESSION TAG SEQADV 5VXT HIS A -3 UNP B1Z4S0 EXPRESSION TAG SEQADV 5VXT HIS A -2 UNP B1Z4S0 EXPRESSION TAG SEQADV 5VXT HIS A -1 UNP B1Z4S0 EXPRESSION TAG SEQADV 5VXT HIS A 0 UNP B1Z4S0 EXPRESSION TAG SEQADV 5VXT MET B -7 UNP B1Z4S0 EXPRESSION TAG SEQADV 5VXT ALA B -6 UNP B1Z4S0 EXPRESSION TAG SEQADV 5VXT HIS B -5 UNP B1Z4S0 EXPRESSION TAG SEQADV 5VXT HIS B -4 UNP B1Z4S0 EXPRESSION TAG SEQADV 5VXT HIS B -3 UNP B1Z4S0 EXPRESSION TAG SEQADV 5VXT HIS B -2 UNP B1Z4S0 EXPRESSION TAG SEQADV 5VXT HIS B -1 UNP B1Z4S0 EXPRESSION TAG SEQADV 5VXT HIS B 0 UNP B1Z4S0 EXPRESSION TAG SEQRES 1 A 325 MET ALA HIS HIS HIS HIS HIS HIS MET SER VAL LYS VAL SEQRES 2 A 325 PHE ASP THR LYS GLU VAL GLN ASP LEU LEU LYS ALA ALA SEQRES 3 A 325 SER ASN ALA GLY THR ASN GLY ALA ASN GLY THR GLN ALA SEQRES 4 A 325 GLY ASN ALA ARG THR GLN GLN ILE VAL HIS ARG LEU LEU SEQRES 5 A 325 GLY ASP LEU PHE LYS ALA ILE ASP ASP LEU ASP ILE THR SEQRES 6 A 325 PRO ASP GLU VAL TRP ALA GLY VAL ASN TYR LEU ASN LYS SEQRES 7 A 325 LEU GLY GLN ASP GLY GLU ALA ALA LEU LEU ALA ALA GLY SEQRES 8 A 325 LEU GLY LEU GLU LYS TYR LEU ASP ILE ARG MET ASP ALA SEQRES 9 A 325 GLU ASP GLU ALA ILE GLY LEU ASP GLY GLY THR PRO ARG SEQRES 10 A 325 THR ILE GLU GLY PRO LEU TYR VAL ALA GLY ALA PRO VAL SEQRES 11 A 325 ARG ASP GLY VAL ALA LYS ILE ASP LEU ASP ALA ASP GLU SEQRES 12 A 325 GLY ALA GLY PRO LEU VAL ILE HIS GLY THR VAL THR GLY SEQRES 13 A 325 LEU ASP GLY LYS PRO VAL ALA GLY ALA LEU VAL GLU CYS SEQRES 14 A 325 TRP HIS ALA ASN SER HIS GLY PHE TYR SER HIS PHE ASP SEQRES 15 A 325 PRO THR GLY LYS GLN SER ASP PHE ASN LEU ARG GLY ALA SEQRES 16 A 325 VAL LYS THR GLY ALA ASP GLY LYS TYR GLU PHE ARG THR SEQRES 17 A 325 LEU MET PRO VAL GLY TYR GLY CYS PRO PRO GLN GLY ALA SEQRES 18 A 325 THR GLN GLN LEU LEU ASP ARG LEU GLY ARG HIS GLY ASN SEQRES 19 A 325 ARG PRO ALA HIS VAL HIS PHE PHE VAL THR SER ASP GLY SEQRES 20 A 325 HIS ARG LYS LEU THR THR GLN PHE ASN ILE GLU GLY ASP SEQRES 21 A 325 PRO LEU ILE TRP ASP ASP PHE ALA TYR ALA THR ARG GLU SEQRES 22 A 325 GLU LEU ILE PRO PRO VAL THR ALA LYS ALA GLY GLY ALA SEQRES 23 A 325 ALA LEU GLY LEU LYS ALA ASP ALA TYR GLN ASP ILE GLU SEQRES 24 A 325 PHE ASN PHE VAL LEU THR PRO ARG VAL GLU GLY LYS ASP SEQRES 25 A 325 ASN GLN ILE VAL GLU ARG LEU ARG ALA SER ALA THR ALA SEQRES 1 B 325 MET ALA HIS HIS HIS HIS HIS HIS MET SER VAL LYS VAL SEQRES 2 B 325 PHE ASP THR LYS GLU VAL GLN ASP LEU LEU LYS ALA ALA SEQRES 3 B 325 SER ASN ALA GLY THR ASN GLY ALA ASN GLY THR GLN ALA SEQRES 4 B 325 GLY ASN ALA ARG THR GLN GLN ILE VAL HIS ARG LEU LEU SEQRES 5 B 325 GLY ASP LEU PHE LYS ALA ILE ASP ASP LEU ASP ILE THR SEQRES 6 B 325 PRO ASP GLU VAL TRP ALA GLY VAL ASN TYR LEU ASN LYS SEQRES 7 B 325 LEU GLY GLN ASP GLY GLU ALA ALA LEU LEU ALA ALA GLY SEQRES 8 B 325 LEU GLY LEU GLU LYS TYR LEU ASP ILE ARG MET ASP ALA SEQRES 9 B 325 GLU ASP GLU ALA ILE GLY LEU ASP GLY GLY THR PRO ARG SEQRES 10 B 325 THR ILE GLU GLY PRO LEU TYR VAL ALA GLY ALA PRO VAL SEQRES 11 B 325 ARG ASP GLY VAL ALA LYS ILE ASP LEU ASP ALA ASP GLU SEQRES 12 B 325 GLY ALA GLY PRO LEU VAL ILE HIS GLY THR VAL THR GLY SEQRES 13 B 325 LEU ASP GLY LYS PRO VAL ALA GLY ALA LEU VAL GLU CYS SEQRES 14 B 325 TRP HIS ALA ASN SER HIS GLY PHE TYR SER HIS PHE ASP SEQRES 15 B 325 PRO THR GLY LYS GLN SER ASP PHE ASN LEU ARG GLY ALA SEQRES 16 B 325 VAL LYS THR GLY ALA ASP GLY LYS TYR GLU PHE ARG THR SEQRES 17 B 325 LEU MET PRO VAL GLY TYR GLY CYS PRO PRO GLN GLY ALA SEQRES 18 B 325 THR GLN GLN LEU LEU ASP ARG LEU GLY ARG HIS GLY ASN SEQRES 19 B 325 ARG PRO ALA HIS VAL HIS PHE PHE VAL THR SER ASP GLY SEQRES 20 B 325 HIS ARG LYS LEU THR THR GLN PHE ASN ILE GLU GLY ASP SEQRES 21 B 325 PRO LEU ILE TRP ASP ASP PHE ALA TYR ALA THR ARG GLU SEQRES 22 B 325 GLU LEU ILE PRO PRO VAL THR ALA LYS ALA GLY GLY ALA SEQRES 23 B 325 ALA LEU GLY LEU LYS ALA ASP ALA TYR GLN ASP ILE GLU SEQRES 24 B 325 PHE ASN PHE VAL LEU THR PRO ARG VAL GLU GLY LYS ASP SEQRES 25 B 325 ASN GLN ILE VAL GLU ARG LEU ARG ALA SER ALA THR ALA HET PTY A 401 50 HET FE A 402 1 HET CAQ A 403 8 HET EDO A 404 4 HET EDO A 405 8 HET CL A 406 1 HET PTY B 401 50 HET FE B 402 1 HET CAQ B 403 8 HET EDO B 404 4 HET EDO B 405 4 HETNAM PTY PHOSPHATIDYLETHANOLAMINE HETNAM FE FE (III) ION HETNAM CAQ CATECHOL HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN CAQ 1,2-DIHYDROXYBENZENE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 PTY 2(C40 H80 N O8 P) FORMUL 4 FE 2(FE 3+) FORMUL 5 CAQ 2(C6 H6 O2) FORMUL 6 EDO 4(C2 H6 O2) FORMUL 8 CL CL 1- FORMUL 14 HOH *616(H2 O) HELIX 1 AA1 THR A 8 ASN A 20 1 13 HELIX 2 AA2 ASN A 33 ASP A 55 1 23 HELIX 3 AA3 THR A 57 ASP A 74 1 18 HELIX 4 AA4 GLU A 76 LEU A 84 1 9 HELIX 5 AA5 GLY A 85 GLY A 102 1 18 HELIX 6 AA6 GLY A 212 GLY A 222 1 11 HELIX 7 AA7 ARG A 264 ILE A 268 5 5 HELIX 8 AA8 GLY A 277 GLY A 281 5 5 HELIX 9 AA9 THR B 8 ASN B 20 1 13 HELIX 10 AB1 ASN B 33 ASP B 55 1 23 HELIX 11 AB2 THR B 57 ASP B 74 1 18 HELIX 12 AB3 GLU B 76 LEU B 84 1 9 HELIX 13 AB4 GLY B 85 GLY B 102 1 18 HELIX 14 AB5 GLY B 212 GLY B 222 1 11 HELIX 15 AB6 ARG B 264 ILE B 268 5 5 HELIX 16 AB7 GLY B 277 GLY B 281 5 5 SHEET 1 AA1 2 VAL A 117 ALA A 118 0 SHEET 2 AA1 2 ALA A 313 SER A 314 1 O ALA A 313 N ALA A 118 SHEET 1 AA2 5 VAL A 122 ASP A 124 0 SHEET 2 AA2 5 ARG A 185 LYS A 189 1 O LYS A 189 N ARG A 123 SHEET 3 AA2 5 LEU A 158 TRP A 162 -1 N VAL A 159 O VAL A 188 SHEET 4 AA2 5 HIS A 230 THR A 236 -1 O THR A 236 N LEU A 158 SHEET 5 AA2 5 LEU A 243 ASN A 248 -1 O THR A 245 N PHE A 233 SHEET 1 AA3 5 VAL A 126 LYS A 128 0 SHEET 2 AA3 5 LYS A 195 LEU A 201 1 O ARG A 199 N ALA A 127 SHEET 3 AA3 5 PRO A 139 THR A 147 -1 N ILE A 142 O PHE A 198 SHEET 4 AA3 5 TYR A 287 GLU A 291 1 O ILE A 290 N VAL A 141 SHEET 5 AA3 5 THR A 272 LYS A 274 -1 N LYS A 274 O TYR A 287 SHEET 1 AA4 4 VAL A 126 LYS A 128 0 SHEET 2 AA4 4 LYS A 195 LEU A 201 1 O ARG A 199 N ALA A 127 SHEET 3 AA4 4 PRO A 139 THR A 147 -1 N ILE A 142 O PHE A 198 SHEET 4 AA4 4 PHE A 294 VAL A 295 1 O PHE A 294 N THR A 147 SHEET 1 AA5 2 VAL B 117 ALA B 118 0 SHEET 2 AA5 2 ALA B 313 SER B 314 1 O ALA B 313 N ALA B 118 SHEET 1 AA6 5 VAL B 122 ASP B 124 0 SHEET 2 AA6 5 ARG B 185 LYS B 189 1 O ALA B 187 N ARG B 123 SHEET 3 AA6 5 LEU B 158 TRP B 162 -1 N VAL B 159 O VAL B 188 SHEET 4 AA6 5 HIS B 230 THR B 236 -1 O THR B 236 N LEU B 158 SHEET 5 AA6 5 LEU B 243 ASN B 248 -1 O THR B 245 N PHE B 233 SHEET 1 AA7 5 VAL B 126 LYS B 128 0 SHEET 2 AA7 5 LYS B 195 LEU B 201 1 O ARG B 199 N ALA B 127 SHEET 3 AA7 5 PRO B 139 THR B 147 -1 N ILE B 142 O PHE B 198 SHEET 4 AA7 5 TYR B 287 GLU B 291 1 O ILE B 290 N VAL B 141 SHEET 5 AA7 5 THR B 272 LYS B 274 -1 N THR B 272 O ASP B 289 SHEET 1 AA8 4 VAL B 126 LYS B 128 0 SHEET 2 AA8 4 LYS B 195 LEU B 201 1 O ARG B 199 N ALA B 127 SHEET 3 AA8 4 PRO B 139 THR B 147 -1 N ILE B 142 O PHE B 198 SHEET 4 AA8 4 PHE B 294 VAL B 295 1 O PHE B 294 N THR B 147 LINK OH TYR A 170 FE FE A 402 1555 1555 1.95 LINK NE2 HIS A 230 FE FE A 402 1555 1555 2.14 LINK NE2 HIS A 232 FE FE A 402 1555 1555 2.03 LINK FE FE A 402 O3 CAQ A 403 1555 1555 1.95 LINK OH TYR B 170 FE FE B 402 1555 1555 1.93 LINK NE2 HIS B 230 FE FE B 402 1555 1555 2.04 LINK NE2 HIS B 232 FE FE B 402 1555 1555 2.05 LINK FE FE B 402 O3 CAQ B 403 1555 1555 2.26 LINK FE FE B 402 O4 CAQ B 403 1555 1555 2.55 SITE 1 AC1 10 GLU A 60 TYR A 67 ALA A 77 ARG A 220 SITE 2 AC1 10 HOH A 611 HOH A 710 ILE B 39 LEU B 43 SITE 3 AC1 10 ALA B 77 PTY B 401 SITE 1 AC2 4 TYR A 170 HIS A 230 HIS A 232 CAQ A 403 SITE 1 AC3 8 LEU A 79 PRO A 114 TYR A 170 ARG A 227 SITE 2 AC3 8 HIS A 230 HIS A 232 GLN A 246 FE A 402 SITE 1 AC4 2 PHE A 173 HOH A 551 SITE 1 AC5 4 GLN A 38 HOH A 540 HOH A 679 HOH A 727 SITE 1 AC6 4 HIS A 172 GLN A 179 HOH A 503 HOH A 582 SITE 1 AC7 14 ILE A 39 LEU A 43 LEU A 44 ASP A 46 SITE 2 AC7 14 PTY A 401 LEU B 43 ASP B 46 GLU B 60 SITE 3 AC7 14 TYR B 67 GLN B 216 ARG B 220 HOH B 519 SITE 4 AC7 14 HOH B 593 HOH B 648 SITE 1 AC8 4 TYR B 170 HIS B 230 HIS B 232 CAQ B 403 SITE 1 AC9 8 LEU B 79 PRO B 114 LEU B 115 TYR B 170 SITE 2 AC9 8 ARG B 227 HIS B 230 HIS B 232 FE B 402 SITE 1 AD1 4 GLY B 148 LEU B 149 HIS B 240 PRO B 298 SITE 1 AD2 5 ILE B 255 ASP B 258 TYR B 261 ALA B 262 SITE 2 AD2 5 THR B 263 CRYST1 66.080 52.200 105.190 90.00 106.62 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015133 0.000000 0.004517 0.00000 SCALE2 0.000000 0.019157 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009921 0.00000