HEADER MEMBRANE PROTEIN 24-MAY-17 5VXV TITLE PEROXISOMAL MEMBRANE PROTEIN PEX15 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOMAL MEMBRANE PROTEIN PEX15; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEROXIN-15,PEROXISOME BIOSYNTHESIS PROTEIN PAS21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: PEX15, PAS21, YOL044W; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA HELICAL, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.M.GARDNER,D.T.CASTANZO REVDAT 4 27-NOV-19 5VXV 1 REMARK REVDAT 3 18-APR-18 5VXV 1 REMARK REVDAT 2 24-JAN-18 5VXV 1 JRNL REVDAT 1 17-JAN-18 5VXV 0 JRNL AUTH B.M.GARDNER,D.T.CASTANZO,S.CHOWDHURY,G.STJEPANOVIC, JRNL AUTH 2 M.S.STEFELY,J.H.HURLEY,G.C.LANDER,A.MARTIN JRNL TITL THE PEROXISOMAL AAA-ATPASE PEX1/PEX6 UNFOLDS SUBSTRATES BY JRNL TITL 2 PROCESSIVE THREADING. JRNL REF NAT COMMUN V. 9 135 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29321502 JRNL DOI 10.1038/S41467-017-02474-4 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35737 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5457 - 3.3391 1.00 3637 153 0.1640 0.1866 REMARK 3 2 3.3391 - 2.6504 1.00 3468 146 0.1659 0.1627 REMARK 3 3 2.6504 - 2.3154 1.00 3458 146 0.1522 0.1608 REMARK 3 4 2.3154 - 2.1037 1.00 3411 143 0.1550 0.1814 REMARK 3 5 2.1037 - 1.9529 1.00 3429 145 0.1671 0.1748 REMARK 3 6 1.9529 - 1.8377 1.00 3375 142 0.1902 0.2073 REMARK 3 7 1.8377 - 1.7457 1.00 3410 143 0.2051 0.2478 REMARK 3 8 1.7457 - 1.6697 1.00 3382 143 0.2213 0.2153 REMARK 3 9 1.6697 - 1.6054 1.00 3356 141 0.2365 0.2438 REMARK 3 10 1.6054 - 1.5500 1.00 3367 142 0.2706 0.3040 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1815 REMARK 3 ANGLE : 0.554 2475 REMARK 3 CHIRALITY : 0.038 306 REMARK 3 PLANARITY : 0.003 309 REMARK 3 DIHEDRAL : 11.981 1125 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.6748 20.9938 84.6804 REMARK 3 T TENSOR REMARK 3 T11: 0.2395 T22: 0.1973 REMARK 3 T33: 0.1691 T12: 0.0152 REMARK 3 T13: 0.0367 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.1575 L22: 0.1109 REMARK 3 L33: 0.0740 L12: 0.1248 REMARK 3 L13: 0.0977 L23: 0.0647 REMARK 3 S TENSOR REMARK 3 S11: 0.3038 S12: -0.2586 S13: 0.1352 REMARK 3 S21: 0.1316 S22: -0.1210 S23: -0.2133 REMARK 3 S31: 0.1052 S32: -0.0443 S33: 0.0013 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.6387 15.7728 80.4519 REMARK 3 T TENSOR REMARK 3 T11: 0.3134 T22: 0.2451 REMARK 3 T33: 0.2276 T12: 0.0250 REMARK 3 T13: 0.0284 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.2244 L22: 0.2480 REMARK 3 L33: 0.2125 L12: 0.0318 REMARK 3 L13: -0.0589 L23: -0.0093 REMARK 3 S TENSOR REMARK 3 S11: 0.1061 S12: 0.0434 S13: 0.2451 REMARK 3 S21: 0.0524 S22: -0.0314 S23: -0.0603 REMARK 3 S31: -0.0499 S32: -0.1376 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1050 21.1019 71.9781 REMARK 3 T TENSOR REMARK 3 T11: 0.1805 T22: 0.1520 REMARK 3 T33: 0.1550 T12: 0.0424 REMARK 3 T13: 0.0317 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.6431 L22: 1.1500 REMARK 3 L33: 2.5793 L12: -0.9621 REMARK 3 L13: -0.1177 L23: -0.2860 REMARK 3 S TENSOR REMARK 3 S11: 0.0223 S12: -0.0856 S13: -0.0752 REMARK 3 S21: 0.1060 S22: 0.0317 S23: 0.0149 REMARK 3 S31: 0.0504 S32: -0.0908 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.4839 30.6307 64.3260 REMARK 3 T TENSOR REMARK 3 T11: 0.2044 T22: 0.1705 REMARK 3 T33: 0.1792 T12: 0.0293 REMARK 3 T13: 0.0040 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.0799 L22: 0.2258 REMARK 3 L33: 0.3727 L12: -0.0465 REMARK 3 L13: 0.0422 L23: -0.0608 REMARK 3 S TENSOR REMARK 3 S11: 0.0470 S12: -0.0551 S13: 0.0870 REMARK 3 S21: 0.1470 S22: 0.0250 S23: 0.1250 REMARK 3 S31: -0.3239 S32: -0.2637 S33: 0.0006 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0166 17.3211 61.9416 REMARK 3 T TENSOR REMARK 3 T11: 0.1526 T22: 0.1442 REMARK 3 T33: 0.1564 T12: 0.0025 REMARK 3 T13: 0.0088 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.7427 L22: 1.1157 REMARK 3 L33: 1.3757 L12: -0.7428 REMARK 3 L13: -0.0155 L23: -0.5402 REMARK 3 S TENSOR REMARK 3 S11: -0.0454 S12: 0.0356 S13: -0.1694 REMARK 3 S21: 0.0296 S22: 0.1234 S23: 0.1125 REMARK 3 S31: 0.1477 S32: -0.0395 S33: -0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.4412 24.0109 53.5530 REMARK 3 T TENSOR REMARK 3 T11: 0.1381 T22: 0.1320 REMARK 3 T33: 0.1214 T12: 0.0130 REMARK 3 T13: -0.0056 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.1555 L22: 1.5259 REMARK 3 L33: 1.8401 L12: -0.2460 REMARK 3 L13: 0.0741 L23: -0.0426 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: -0.0668 S13: -0.0018 REMARK 3 S21: -0.0604 S22: -0.0358 S23: 0.0691 REMARK 3 S31: -0.0152 S32: -0.0501 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0605 14.9782 45.6475 REMARK 3 T TENSOR REMARK 3 T11: 0.1648 T22: 0.1841 REMARK 3 T33: 0.1674 T12: -0.0160 REMARK 3 T13: 0.0001 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 0.4542 L22: 0.1657 REMARK 3 L33: 0.1397 L12: -0.2648 REMARK 3 L13: -0.0524 L23: 0.0595 REMARK 3 S TENSOR REMARK 3 S11: -0.0242 S12: 0.1801 S13: -0.2046 REMARK 3 S21: 0.0491 S22: -0.0197 S23: 0.1588 REMARK 3 S31: 0.2465 S32: -0.1995 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.1151 25.7686 47.2067 REMARK 3 T TENSOR REMARK 3 T11: 0.1601 T22: 0.1985 REMARK 3 T33: 0.2058 T12: 0.0134 REMARK 3 T13: -0.0062 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 0.3616 L22: 0.5983 REMARK 3 L33: 0.5389 L12: 0.4045 REMARK 3 L13: 0.2400 L23: 0.4725 REMARK 3 S TENSOR REMARK 3 S11: -0.1050 S12: 0.4068 S13: 0.5298 REMARK 3 S21: -0.1176 S22: -0.0441 S23: -0.2928 REMARK 3 S31: -0.1677 S32: 0.3531 S33: -0.0007 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 237 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.4861 6.1618 49.4993 REMARK 3 T TENSOR REMARK 3 T11: 0.1584 T22: 0.1685 REMARK 3 T33: 0.1839 T12: 0.0082 REMARK 3 T13: -0.0051 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.3871 L22: 0.4082 REMARK 3 L33: 0.3254 L12: -0.3976 REMARK 3 L13: 0.0710 L23: -0.0733 REMARK 3 S TENSOR REMARK 3 S11: -0.0149 S12: -0.0223 S13: -0.1729 REMARK 3 S21: 0.0831 S22: 0.0533 S23: -0.0048 REMARK 3 S31: 0.0902 S32: -0.1193 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VXV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000227776. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97956 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35744 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 48.522 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.13330 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, MES PH 6.0, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.84500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.89000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.42000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.89000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.84500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.42000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 42 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 44 CD OE1 OE2 REMARK 470 LYS A 55 NZ REMARK 470 LYS A 59 CD CE NZ REMARK 470 LYS A 64 CE NZ REMARK 470 GLU A 67 OE1 OE2 REMARK 470 LYS A 77 CD CE NZ REMARK 470 SER A 78 OG REMARK 470 ASN A 79 CG OD1 ND2 REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 LEU A 101 CD1 CD2 REMARK 470 ASN A 109 OD1 ND2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 LYS A 123 NZ REMARK 470 LYS A 159 CE NZ REMARK 470 LYS A 177 CD CE NZ REMARK 470 LYS A 201 CD CE NZ REMARK 470 LYS A 205 NZ REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 ASN A 210 OD1 ND2 REMARK 470 LYS A 217 NZ REMARK 470 LYS A 233 NZ REMARK 470 LYS A 248 CE NZ REMARK 470 LYS A 253 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 197 HZ1 LYS A 201 1.57 REMARK 500 HZ2 LYS A 248 OD1 ASP A 252 1.59 REMARK 500 O HOH A 426 O HOH A 518 2.02 REMARK 500 O HOH A 445 O HOH A 542 2.09 REMARK 500 OD2 ASP A 252 O HOH A 301 2.12 REMARK 500 OD1 ASP A 252 O HOH A 302 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HD22 ASN A 210 O HOH A 486 4456 1.59 REMARK 500 O HOH A 344 O HOH A 477 3746 2.05 REMARK 500 O HOH A 367 O HOH A 393 4456 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 131 66.89 -119.85 REMARK 500 THR A 180 -18.69 89.73 REMARK 500 VAL A 198 -61.56 -96.88 REMARK 500 REMARK 500 REMARK: NULL DBREF 5VXV A 43 253 UNP Q08215 PEX15_YEAST 43 253 SEQADV 5VXV MSE A 42 UNP Q08215 INITIATING METHIONINE SEQADV 5VXV LEU A 254 UNP Q08215 EXPRESSION TAG SEQADV 5VXV GLU A 255 UNP Q08215 EXPRESSION TAG SEQADV 5VXV VAL A 256 UNP Q08215 EXPRESSION TAG SEQADV 5VXV LEU A 257 UNP Q08215 EXPRESSION TAG SEQADV 5VXV PHE A 258 UNP Q08215 EXPRESSION TAG SEQADV 5VXV GLN A 259 UNP Q08215 EXPRESSION TAG SEQRES 1 A 218 MSE SER GLU VAL PHE GLN GLU CYS VAL ASN LEU PHE ILE SEQRES 2 A 218 LYS ARG ASP ILE LYS ASP CYS LEU GLU LYS MSE SER GLU SEQRES 3 A 218 VAL GLY PHE ILE ASP ILE THR VAL PHE LYS SER ASN PRO SEQRES 4 A 218 MSE ILE LEU ASP LEU PHE VAL SER ALA CYS ASP ILE MSE SEQRES 5 A 218 PRO SER PHE THR LYS LEU GLY LEU THR LEU GLN SER GLU SEQRES 6 A 218 ILE LEU ASN ILE PHE THR LEU ASP THR PRO GLN CYS ILE SEQRES 7 A 218 GLU THR ARG LYS ILE ILE LEU GLY ASP LEU SER LYS LEU SEQRES 8 A 218 LEU VAL ILE ASN LYS PHE PHE ARG CYS CYS ILE LYS VAL SEQRES 9 A 218 ILE GLN PHE ASN LEU THR ASP HIS THR GLU GLN GLU GLU SEQRES 10 A 218 LYS THR LEU GLU LEU GLU SER ILE MSE SER ASP PHE ILE SEQRES 11 A 218 PHE VAL TYR ILE THR LYS MSE ARG THR THR ILE ASP VAL SEQRES 12 A 218 VAL GLY LEU GLN GLU LEU ILE GLU ILE PHE ILE PHE GLN SEQRES 13 A 218 VAL LYS VAL LYS LEU HIS HIS LYS LYS PRO SER PRO ASN SEQRES 14 A 218 MSE TYR TRP ALA LEU CYS LYS THR LEU PRO LYS LEU SER SEQRES 15 A 218 PRO THR LEU LYS GLY LEU TYR LEU SER LYS ASP VAL SER SEQRES 16 A 218 ILE GLU ASP ALA ILE LEU ASN SER ILE ASP ASN LYS ILE SEQRES 17 A 218 GLN LYS ASP LYS LEU GLU VAL LEU PHE GLN MODRES 5VXV MSE A 65 MET MODIFIED RESIDUE MODRES 5VXV MSE A 81 MET MODIFIED RESIDUE MODRES 5VXV MSE A 93 MET MODIFIED RESIDUE MODRES 5VXV MSE A 167 MET MODIFIED RESIDUE MODRES 5VXV MSE A 178 MET MODIFIED RESIDUE MODRES 5VXV MSE A 211 MET MODIFIED RESIDUE HET MSE A 65 17 HET MSE A 81 17 HET MSE A 93 17 HET MSE A 167 17 HET MSE A 178 17 HET MSE A 211 17 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 HOH *261(H2 O) HELIX 1 AA1 SER A 43 LYS A 55 1 13 HELIX 2 AA2 ASP A 57 GLY A 69 1 13 HELIX 3 AA3 ASP A 72 ASN A 79 1 8 HELIX 4 AA4 ASN A 79 MSE A 93 1 15 HELIX 5 AA5 GLY A 100 THR A 112 1 13 HELIX 6 AA6 THR A 115 ASP A 128 1 14 HELIX 7 AA7 LYS A 131 ASN A 149 1 19 HELIX 8 AA8 ASP A 152 MSE A 178 1 27 HELIX 9 AA9 ASP A 183 VAL A 198 1 16 HELIX 10 AB1 SER A 208 LEU A 219 1 12 HELIX 11 AB2 LYS A 221 LEU A 229 1 9 HELIX 12 AB3 ILE A 237 GLN A 259 1 23 SHEET 1 AA1 2 TYR A 230 SER A 232 0 SHEET 2 AA1 2 VAL A 235 SER A 236 -1 O VAL A 235 N LEU A 231 LINK C LYS A 64 N MSE A 65 1555 1555 1.33 LINK C MSE A 65 N SER A 66 1555 1555 1.34 LINK C PRO A 80 N MSE A 81 1555 1555 1.33 LINK C MSE A 81 N ILE A 82 1555 1555 1.34 LINK C ILE A 92 N MSE A 93 1555 1555 1.33 LINK C MSE A 93 N PRO A 94 1555 1555 1.34 LINK C ILE A 166 N MSE A 167 1555 1555 1.33 LINK C MSE A 167 N SER A 168 1555 1555 1.34 LINK C LYS A 177 N MSE A 178 1555 1555 1.33 LINK C MSE A 178 N ARG A 179 1555 1555 1.33 LINK C ASN A 210 N MSE A 211 1555 1555 1.33 LINK C MSE A 211 N TYR A 212 1555 1555 1.33 CRYST1 47.690 58.840 85.780 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020969 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016995 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011658 0.00000