HEADER HYDROLASE 25-MAY-17 5VYD TITLE CRYSTAL STRUCTURE OF PHOSPHODIESTERASE DOMAIN OF RHOPDE FUSION PROTEIN TITLE 2 FROM THE CHOANOFLAGELLATE SALPINGOECA ROSETTA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHODIESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.4.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALPINGOECA ROSETTA (STRAIN ATCC 50818 / BSB- SOURCE 3 021); SOURCE 4 ORGANISM_TAXID: 946362; SOURCE 5 STRAIN: ATCC 50818 / BSB-021; SOURCE 6 GENE: PTSG_02023; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: T7; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PDE, CGMP SPECIFIC, ENZYME, ALPHA HELICAL, METAL BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.PREM KUMAR,L.B.LAMARCHE,D.D.OPRIAN REVDAT 4 04-OCT-23 5VYD 1 LINK REVDAT 3 11-DEC-19 5VYD 1 REMARK REVDAT 2 08-NOV-17 5VYD 1 JRNL REVDAT 1 18-OCT-17 5VYD 0 JRNL AUTH L.B.LAMARCHE,R.P.KUMAR,M.M.TRIEU,E.L.DEVINE, JRNL AUTH 2 L.E.COHEN-ABELES,D.L.THEOBALD,D.D.OPRIAN JRNL TITL PURIFICATION AND CHARACTERIZATION OF RHOPDE, A JRNL TITL 2 RETINYLIDENE/PHOSPHODIESTERASE FUSION PROTEIN AND POTENTIAL JRNL TITL 3 OPTOGENETIC TOOL FROM THE CHOANOFLAGELLATE SALPINGOECA JRNL TITL 4 ROSETTA. JRNL REF BIOCHEMISTRY V. 56 5812 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28976747 JRNL DOI 10.1021/ACS.BIOCHEM.7B00519 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2719 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 34393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9864 - 5.2366 1.00 2992 143 0.1621 0.1675 REMARK 3 2 5.2366 - 4.1688 1.00 2811 173 0.1622 0.1937 REMARK 3 3 4.1688 - 3.6455 0.95 2718 138 0.2285 0.2456 REMARK 3 4 3.6455 - 3.3138 0.95 2694 119 0.2463 0.2869 REMARK 3 5 3.3138 - 3.0772 0.99 2788 131 0.2483 0.2779 REMARK 3 6 3.0772 - 2.8964 0.99 2769 139 0.2461 0.2891 REMARK 3 7 2.8964 - 2.7517 0.98 2727 137 0.2506 0.2782 REMARK 3 8 2.7517 - 2.6322 0.97 2700 160 0.2388 0.3410 REMARK 3 9 2.6322 - 2.5311 0.96 2666 140 0.2423 0.2746 REMARK 3 10 2.5311 - 2.4439 0.96 2656 136 0.2387 0.2744 REMARK 3 11 2.4439 - 2.3676 0.95 2659 106 0.2373 0.2764 REMARK 3 12 2.3676 - 2.3000 0.93 2538 153 0.2641 0.3084 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5263 REMARK 3 ANGLE : 0.523 7143 REMARK 3 CHIRALITY : 0.037 807 REMARK 3 PLANARITY : 0.003 926 REMARK 3 DIHEDRAL : 14.025 3161 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VYD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000228137. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34788 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.60 REMARK 200 R MERGE FOR SHELL (I) : 0.79400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 1TAZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG3350, 100 MM SUCCINIC ACID, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.32450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.31950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.31950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.32450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 18 REMARK 465 ALA A 19 REMARK 465 GLU A 20 REMARK 465 LYS A 21 REMARK 465 HIS B 335 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 ASP B 18 CG OD1 OD2 REMARK 470 LYS B 79 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 618 O HOH A 641 1.93 REMARK 500 O HOH A 644 O HOH A 649 1.94 REMARK 500 O THR A 104 O HOH A 501 1.95 REMARK 500 O HOH A 525 O HOH A 654 1.97 REMARK 500 O HOH A 519 O HOH B 615 1.98 REMARK 500 O HOH B 575 O HOH B 612 1.99 REMARK 500 O HOH B 536 O HOH B 602 2.02 REMARK 500 O HOH B 589 O HOH B 601 2.06 REMARK 500 O ALA B 328 O HOH B 501 2.12 REMARK 500 OE2 GLU A 265 O HOH A 502 2.12 REMARK 500 OD1 ASN A 136 O HOH A 503 2.13 REMARK 500 O HOH A 569 O HOH A 645 2.15 REMARK 500 OE1 GLU A 105 O HOH A 504 2.18 REMARK 500 O HOH B 606 O HOH B 619 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 211 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 82 -61.29 -107.14 REMARK 500 VAL A 102 -33.68 -131.98 REMARK 500 PHE A 106 -22.77 -148.49 REMARK 500 LEU A 237 57.53 -92.23 REMARK 500 VAL A 295 -63.01 -128.02 REMARK 500 VAL B 102 -38.19 -136.98 REMARK 500 SER B 149 61.11 37.31 REMARK 500 LEU B 237 59.24 -96.50 REMARK 500 VAL B 295 -61.41 -127.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 87 NE2 REMARK 620 2 HIS A 122 NE2 93.6 REMARK 620 3 ASP A 123 OD2 92.2 87.8 REMARK 620 4 ASP A 236 OD1 83.9 87.4 173.6 REMARK 620 5 HOH A 535 O 160.8 105.5 86.7 98.7 REMARK 620 6 HOH A 541 O 91.1 175.2 91.3 93.8 69.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 123 OD1 REMARK 620 2 HOH A 524 O 153.9 REMARK 620 3 HOH A 535 O 93.6 94.7 REMARK 620 4 HOH A 540 O 105.9 99.5 84.8 REMARK 620 5 HOH A 543 O 76.7 77.9 95.2 177.4 REMARK 620 6 HOH A 614 O 89.4 84.8 174.0 89.4 90.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 87 NE2 REMARK 620 2 HIS B 122 NE2 93.2 REMARK 620 3 ASP B 123 OD2 94.7 79.7 REMARK 620 4 ASP B 236 OD1 82.7 90.0 169.3 REMARK 620 5 HOH B 516 O 162.2 104.6 87.0 98.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 123 OD1 REMARK 620 2 HOH B 516 O 96.1 REMARK 620 3 HOH B 530 O 76.6 94.9 REMARK 620 4 HOH B 531 O 103.7 88.4 176.6 REMARK 620 5 HOH B 540 O 147.1 93.4 71.3 108.0 REMARK 620 6 HOH B 560 O 80.2 176.1 83.0 93.7 89.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 DBREF 5VYD A 18 335 UNP F2TZN0 F2TZN0_SALR5 387 704 DBREF 5VYD B 18 335 UNP F2TZN0 F2TZN0_SALR5 387 704 SEQRES 1 A 318 ASP ALA GLU LYS LEU ALA ALA SER SER LEU PHE THR TRP SEQRES 2 A 318 ASP PHE ASP ALA LEU ASP LYS SER ASP GLU ASP LEU THR SEQRES 3 A 318 ALA VAL CYS VAL ARG VAL PHE GLN GLU LEU HIS VAL ILE SEQRES 4 A 318 GLU GLN PHE ASN ILE ASP GLU LYS LYS LEU ARG LYS TRP SEQRES 5 A 318 LEU GLN LYS VAL ARG THR GLN TYR ASN LYS ASN PRO PHE SEQRES 6 A 318 HIS ASN TRP ARG HIS ALA VAL MET VAL LEU HIS THR THR SEQRES 7 A 318 TYR LEU LEU LEU THR SER VAL ALA THR GLU PHE ILE THR SEQRES 8 A 318 GLU VAL GLU LEU LEU ALA MET LEU ILE ALA ALA LEU SER SEQRES 9 A 318 HIS ASP LEU ASP HIS ASN GLY LEU THR ASN ALA PHE HIS SEQRES 10 A 318 ILE ASN SER ARG SER GLU LEU ALA LEU VAL TYR ASN ASP SEQRES 11 A 318 GLN SER VAL LEU GLU ASN HIS HIS SER HIS LEU ALA PHE SEQRES 12 A 318 GLU ILE LEU LEU GLU LYS GLY CYS ASN VAL VAL GLU ASN SEQRES 13 A 318 LEU ASP GLU ASP GLU PHE LYS ARG LEU ARG ALA VAL ILE SEQRES 14 A 318 ILE ASN CYS ILE LEU ASN THR ASP MET ALA THR HIS HIS SEQRES 15 A 318 THR LYS LEU SER LYS MET GLU GLU VAL ASN ARG LEU GLY SEQRES 16 A 318 GLY PHE ILE ASN LEU ALA GLU ASN ASN ASP GLN ARG LEU SEQRES 17 A 318 PHE VAL LEU ALA VAL LEU LEU HIS THR ALA ASP LEU HIS SEQRES 18 A 318 ASN PRO ILE LYS PRO PHE GLU SER ASN LYS ARG TRP SER SEQRES 19 A 318 ALA ARG LEU GLN LYS GLU PHE ASN ASN GLN VAL GLU LEU SEQRES 20 A 318 GLU ALA LYS MET ASN LEU PRO SER LEU PRO PHE MET ARG SEQRES 21 A 318 GLY ASN ASP GLU GLU SER LEU ALA LYS GLY GLU ILE GLY SEQRES 22 A 318 PHE ILE ASN PHE VAL VAL LYS PRO TRP HIS GLN GLN LEU SEQRES 23 A 318 SER GLN ALA PHE PRO LYS LEU ASP PHE LEU LEU ASP THR SEQRES 24 A 318 ILE ASP ALA ASN LEU ALA GLU TRP LYS ALA ILE ALA GLU SEQRES 25 A 318 SER TYR ARG GLN MET HIS SEQRES 1 B 318 ASP ALA GLU LYS LEU ALA ALA SER SER LEU PHE THR TRP SEQRES 2 B 318 ASP PHE ASP ALA LEU ASP LYS SER ASP GLU ASP LEU THR SEQRES 3 B 318 ALA VAL CYS VAL ARG VAL PHE GLN GLU LEU HIS VAL ILE SEQRES 4 B 318 GLU GLN PHE ASN ILE ASP GLU LYS LYS LEU ARG LYS TRP SEQRES 5 B 318 LEU GLN LYS VAL ARG THR GLN TYR ASN LYS ASN PRO PHE SEQRES 6 B 318 HIS ASN TRP ARG HIS ALA VAL MET VAL LEU HIS THR THR SEQRES 7 B 318 TYR LEU LEU LEU THR SER VAL ALA THR GLU PHE ILE THR SEQRES 8 B 318 GLU VAL GLU LEU LEU ALA MET LEU ILE ALA ALA LEU SER SEQRES 9 B 318 HIS ASP LEU ASP HIS ASN GLY LEU THR ASN ALA PHE HIS SEQRES 10 B 318 ILE ASN SER ARG SER GLU LEU ALA LEU VAL TYR ASN ASP SEQRES 11 B 318 GLN SER VAL LEU GLU ASN HIS HIS SER HIS LEU ALA PHE SEQRES 12 B 318 GLU ILE LEU LEU GLU LYS GLY CYS ASN VAL VAL GLU ASN SEQRES 13 B 318 LEU ASP GLU ASP GLU PHE LYS ARG LEU ARG ALA VAL ILE SEQRES 14 B 318 ILE ASN CYS ILE LEU ASN THR ASP MET ALA THR HIS HIS SEQRES 15 B 318 THR LYS LEU SER LYS MET GLU GLU VAL ASN ARG LEU GLY SEQRES 16 B 318 GLY PHE ILE ASN LEU ALA GLU ASN ASN ASP GLN ARG LEU SEQRES 17 B 318 PHE VAL LEU ALA VAL LEU LEU HIS THR ALA ASP LEU HIS SEQRES 18 B 318 ASN PRO ILE LYS PRO PHE GLU SER ASN LYS ARG TRP SER SEQRES 19 B 318 ALA ARG LEU GLN LYS GLU PHE ASN ASN GLN VAL GLU LEU SEQRES 20 B 318 GLU ALA LYS MET ASN LEU PRO SER LEU PRO PHE MET ARG SEQRES 21 B 318 GLY ASN ASP GLU GLU SER LEU ALA LYS GLY GLU ILE GLY SEQRES 22 B 318 PHE ILE ASN PHE VAL VAL LYS PRO TRP HIS GLN GLN LEU SEQRES 23 B 318 SER GLN ALA PHE PRO LYS LEU ASP PHE LEU LEU ASP THR SEQRES 24 B 318 ILE ASP ALA ASN LEU ALA GLU TRP LYS ALA ILE ALA GLU SEQRES 25 B 318 SER TYR ARG GLN MET HIS HET ZN A 401 1 HET MG A 402 1 HET ZN B 401 1 HET MG B 402 1 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *288(H2 O) HELIX 1 AA1 ALA A 23 PHE A 28 1 6 HELIX 2 AA2 ASP A 33 LYS A 37 5 5 HELIX 3 AA3 SER A 38 LEU A 53 1 16 HELIX 4 AA4 HIS A 54 ASN A 60 1 7 HELIX 5 AA5 ASP A 62 TYR A 77 1 16 HELIX 6 AA6 ASN A 84 ALA A 103 1 20 HELIX 7 AA7 THR A 108 HIS A 122 1 15 HELIX 8 AA8 THR A 130 ARG A 138 1 9 HELIX 9 AA9 SER A 139 TYR A 145 1 7 HELIX 10 AB1 SER A 149 LEU A 164 1 16 HELIX 11 AB2 GLU A 165 ASN A 169 5 5 HELIX 12 AB3 ASP A 175 ASN A 192 1 18 HELIX 13 AB4 THR A 193 ALA A 196 5 4 HELIX 14 AB5 THR A 197 LEU A 211 1 15 HELIX 15 AB6 ASN A 220 LEU A 237 1 18 HELIX 16 AB7 PRO A 243 MET A 268 1 26 HELIX 17 AB8 LEU A 273 ARG A 277 5 5 HELIX 18 AB9 ASP A 280 VAL A 295 1 16 HELIX 19 AC1 VAL A 295 PHE A 307 1 13 HELIX 20 AC2 PRO A 308 LEU A 310 5 3 HELIX 21 AC3 ASP A 311 MET A 334 1 24 HELIX 22 AC4 ALA B 19 ALA B 24 1 6 HELIX 23 AC5 SER B 38 LEU B 53 1 16 HELIX 24 AC6 HIS B 54 PHE B 59 1 6 HELIX 25 AC7 ASP B 62 TYR B 77 1 16 HELIX 26 AC8 ASN B 84 ALA B 103 1 20 HELIX 27 AC9 THR B 108 HIS B 122 1 15 HELIX 28 AD1 THR B 130 ARG B 138 1 9 HELIX 29 AD2 SER B 139 TYR B 145 1 7 HELIX 30 AD3 SER B 149 LEU B 164 1 16 HELIX 31 AD4 GLU B 165 ASN B 169 5 5 HELIX 32 AD5 ASP B 175 ASN B 192 1 18 HELIX 33 AD6 THR B 193 ALA B 196 5 4 HELIX 34 AD7 THR B 197 LEU B 211 1 15 HELIX 35 AD8 ASN B 220 LEU B 237 1 18 HELIX 36 AD9 HIS B 238 LYS B 242 5 5 HELIX 37 AE1 PRO B 243 MET B 268 1 26 HELIX 38 AE2 LEU B 273 ARG B 277 5 5 HELIX 39 AE3 ASP B 280 VAL B 295 1 16 HELIX 40 AE4 VAL B 295 PHE B 307 1 13 HELIX 41 AE5 PRO B 308 LEU B 310 5 3 HELIX 42 AE6 ASP B 311 MET B 334 1 24 LINK NE2 HIS A 87 ZN ZN A 401 1555 1555 2.22 LINK NE2 HIS A 122 ZN ZN A 401 1555 1555 2.21 LINK OD2 ASP A 123 ZN ZN A 401 1555 1555 2.13 LINK OD1 ASP A 123 MG MG A 402 1555 1555 2.18 LINK OD1 ASP A 236 ZN ZN A 401 1555 1555 2.18 LINK ZN ZN A 401 O HOH A 535 1555 1555 2.13 LINK ZN ZN A 401 O HOH A 541 1555 1555 2.56 LINK MG MG A 402 O HOH A 524 1555 1555 2.21 LINK MG MG A 402 O HOH A 535 1555 1555 1.97 LINK MG MG A 402 O HOH A 540 1555 1555 2.16 LINK MG MG A 402 O HOH A 543 1555 1555 2.31 LINK MG MG A 402 O HOH A 614 1555 1555 2.17 LINK NE2 HIS B 87 ZN ZN B 401 1555 1555 2.26 LINK NE2 HIS B 122 ZN ZN B 401 1555 1555 2.30 LINK OD2 ASP B 123 ZN ZN B 401 1555 1555 2.18 LINK OD1 ASP B 123 MG MG B 402 1555 1555 2.30 LINK OD1 ASP B 236 ZN ZN B 401 1555 1555 2.20 LINK ZN ZN B 401 O HOH B 516 1555 1555 2.16 LINK MG MG B 402 O HOH B 516 1555 1555 1.97 LINK MG MG B 402 O HOH B 530 1555 1555 2.27 LINK MG MG B 402 O HOH B 531 1555 1555 2.18 LINK MG MG B 402 O HOH B 540 1555 1555 2.00 LINK MG MG B 402 O HOH B 560 1555 1555 2.10 SITE 1 AC1 6 HIS A 87 HIS A 122 ASP A 123 ASP A 236 SITE 2 AC1 6 HOH A 535 HOH A 541 SITE 1 AC2 6 ASP A 123 HOH A 524 HOH A 535 HOH A 540 SITE 2 AC2 6 HOH A 543 HOH A 614 SITE 1 AC3 6 HIS B 87 HIS B 122 ASP B 123 ASP B 236 SITE 2 AC3 6 HOH B 516 HOH B 605 SITE 1 AC4 6 ASP B 123 HOH B 516 HOH B 530 HOH B 531 SITE 2 AC4 6 HOH B 540 HOH B 560 CRYST1 74.649 96.400 108.639 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013396 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010373 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009205 0.00000