data_5VYG # _entry.id 5VYG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5VYG pdb_00005vyg 10.2210/pdb5vyg/pdb WWPDB D_1000228144 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5VYG _pdbx_database_status.recvd_initial_deposition_date 2017-05-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yu, H.J.' 1 ? 'Li, H.L.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Biol. Chem.' _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 292 _citation.language ? _citation.page_first 15964 _citation.page_last 15973 _citation.title 'O-Glycosylation modulates the stability of epidermal growth factor-like repeats and thereby regulates Notch trafficking' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1074/jbc.M117.800102 _citation.pdbx_database_id_PubMed 28729422 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Takeuchi, H.' 1 ? primary 'Yu, H.' 2 ? primary 'Hao, H.' 3 ? primary 'Takeuchi, M.' 4 ? primary 'Ito, A.' 5 ? primary 'Li, H.' 6 ? primary 'Haltiwanger, R.S.' 7 ? # _cell.entry_id 5VYG _cell.length_a 92.417 _cell.length_b 46.840 _cell.length_c 37.259 _cell.angle_alpha 90.00 _cell.angle_beta 92.58 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VYG _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Coagulation factor IX' 5710.229 3 3.4.21.22 ? ? ? 2 branched man 'alpha-D-xylopyranose-(1-3)-alpha-D-xylopyranose-(1-3)-beta-D-glucopyranose' 444.386 3 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 3 ? ? ? ? 4 water nat water 18.015 37 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Christmas factor,Plasma thromboplastin component,PTC' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code MDIVDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCELLEHHHHHH _entity_poly.pdbx_seq_one_letter_code_can MDIVDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCELLEHHHHHH _entity_poly.pdbx_strand_id B,A,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASP n 1 3 ILE n 1 4 VAL n 1 5 ASP n 1 6 GLY n 1 7 ASP n 1 8 GLN n 1 9 CYS n 1 10 GLU n 1 11 SER n 1 12 ASN n 1 13 PRO n 1 14 CYS n 1 15 LEU n 1 16 ASN n 1 17 GLY n 1 18 GLY n 1 19 SER n 1 20 CYS n 1 21 LYS n 1 22 ASP n 1 23 ASP n 1 24 ILE n 1 25 ASN n 1 26 SER n 1 27 TYR n 1 28 GLU n 1 29 CYS n 1 30 TRP n 1 31 CYS n 1 32 PRO n 1 33 PHE n 1 34 GLY n 1 35 PHE n 1 36 GLU n 1 37 GLY n 1 38 LYS n 1 39 ASN n 1 40 CYS n 1 41 GLU n 1 42 LEU n 1 43 LEU n 1 44 GLU n 1 45 HIS n 1 46 HIS n 1 47 HIS n 1 48 HIS n 1 49 HIS n 1 50 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 50 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene F9 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code FA9_HUMAN _struct_ref.pdbx_db_accession P00740 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL _struct_ref.pdbx_align_begin 92 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5VYG B 4 ? 42 ? P00740 92 ? 130 ? 46 84 2 1 5VYG A 4 ? 42 ? P00740 92 ? 130 ? 46 84 3 1 5VYG C 4 ? 42 ? P00740 92 ? 130 ? 46 84 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5VYG MET B 1 ? UNP P00740 ? ? 'initiating methionine' 43 1 1 5VYG ASP B 2 ? UNP P00740 ? ? 'expression tag' 44 2 1 5VYG ILE B 3 ? UNP P00740 ? ? 'expression tag' 45 3 1 5VYG LEU B 43 ? UNP P00740 ? ? 'expression tag' 85 4 1 5VYG GLU B 44 ? UNP P00740 ? ? 'expression tag' 86 5 1 5VYG HIS B 45 ? UNP P00740 ? ? 'expression tag' 87 6 1 5VYG HIS B 46 ? UNP P00740 ? ? 'expression tag' 88 7 1 5VYG HIS B 47 ? UNP P00740 ? ? 'expression tag' 89 8 1 5VYG HIS B 48 ? UNP P00740 ? ? 'expression tag' 90 9 1 5VYG HIS B 49 ? UNP P00740 ? ? 'expression tag' 91 10 1 5VYG HIS B 50 ? UNP P00740 ? ? 'expression tag' 92 11 2 5VYG MET A 1 ? UNP P00740 ? ? 'initiating methionine' 43 12 2 5VYG ASP A 2 ? UNP P00740 ? ? 'expression tag' 44 13 2 5VYG ILE A 3 ? UNP P00740 ? ? 'expression tag' 45 14 2 5VYG LEU A 43 ? UNP P00740 ? ? 'expression tag' 85 15 2 5VYG GLU A 44 ? UNP P00740 ? ? 'expression tag' 86 16 2 5VYG HIS A 45 ? UNP P00740 ? ? 'expression tag' 87 17 2 5VYG HIS A 46 ? UNP P00740 ? ? 'expression tag' 88 18 2 5VYG HIS A 47 ? UNP P00740 ? ? 'expression tag' 89 19 2 5VYG HIS A 48 ? UNP P00740 ? ? 'expression tag' 90 20 2 5VYG HIS A 49 ? UNP P00740 ? ? 'expression tag' 91 21 2 5VYG HIS A 50 ? UNP P00740 ? ? 'expression tag' 92 22 3 5VYG MET C 1 ? UNP P00740 ? ? 'initiating methionine' 43 23 3 5VYG ASP C 2 ? UNP P00740 ? ? 'expression tag' 44 24 3 5VYG ILE C 3 ? UNP P00740 ? ? 'expression tag' 45 25 3 5VYG LEU C 43 ? UNP P00740 ? ? 'expression tag' 85 26 3 5VYG GLU C 44 ? UNP P00740 ? ? 'expression tag' 86 27 3 5VYG HIS C 45 ? UNP P00740 ? ? 'expression tag' 87 28 3 5VYG HIS C 46 ? UNP P00740 ? ? 'expression tag' 88 29 3 5VYG HIS C 47 ? UNP P00740 ? ? 'expression tag' 89 30 3 5VYG HIS C 48 ? UNP P00740 ? ? 'expression tag' 90 31 3 5VYG HIS C 49 ? UNP P00740 ? ? 'expression tag' 91 32 3 5VYG HIS C 50 ? UNP P00740 ? ? 'expression tag' 92 33 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BGC 'D-saccharide, beta linking' . beta-D-glucopyranose 'beta-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 XYS 'D-saccharide, alpha linking' . alpha-D-xylopyranose 'alpha-D-xylose; D-xylose; xylose; XYLOPYRANOSE' 'C5 H10 O5' 150.130 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5VYG _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.35 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.69 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M Tris pH 8.5, 15% Glycerol, 1.6 M (NH4)2SO4, 5% 2,2,2-Trifluoroethanol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX225HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-09-06 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 31-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9793 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 31-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5VYG _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.2 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7814 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.5 _reflns.pdbx_Rmerge_I_obs 0.104 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.32 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 4.5 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1200 _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.515 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5VYG _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 7814 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 46.16 _refine.ls_d_res_high 2.20 _refine.ls_percent_reflns_obs 99.82 _refine.ls_R_factor_obs 0.21448 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21233 _refine.ls_R_factor_R_free 0.25895 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 377 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.939 _refine.correlation_coeff_Fo_to_Fc_free 0.913 _refine.B_iso_mean 36.999 _refine.aniso_B[1][1] -0.02 _refine.aniso_B[2][2] -0.96 _refine.aniso_B[3][3] 0.96 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.25 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT' _refine.pdbx_starting_model 1edm _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.265 _refine.pdbx_overall_ESU_R_Free 0.216 _refine.overall_SU_ML 0.160 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 6.412 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 958 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 90 _refine_hist.number_atoms_solvent 37 _refine_hist.number_atoms_total 1085 _refine_hist.d_res_high 2.20 _refine_hist.d_res_low 46.16 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.020 ? 1078 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.490 2.048 ? 1469 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.362 5.000 ? 125 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 44.180 27.736 ? 53 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.405 15.000 ? 151 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.083 0.200 ? 165 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.021 ? 784 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.200 _refine_ls_shell.d_res_low 2.257 _refine_ls_shell.number_reflns_R_work 546 _refine_ls_shell.R_factor_R_work 0.260 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.332 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 28 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 5VYG _struct.title 'Crystal structure of hFA9 EGF repeat with O-glucose trisaccharide' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5VYG _struct_keywords.text 'Notch regulation, EGF repeat, glycosylation, Transferase-Hydrolase complex, transferase, hydrolase' _struct_keywords.pdbx_keywords 'transferase, hydrolase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 4 ? K N N 4 ? L N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 A CYS 20 SG ? ? B CYS 51 B CYS 62 1_555 ? ? ? ? ? ? ? 2.063 ? ? disulf2 disulf ? ? A CYS 14 SG ? ? ? 1_555 A CYS 29 SG ? ? B CYS 56 B CYS 71 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf3 disulf ? ? A CYS 31 SG ? ? ? 1_555 A CYS 40 SG ? ? B CYS 73 B CYS 82 1_555 ? ? ? ? ? ? ? 2.072 ? ? disulf4 disulf ? ? B CYS 9 SG ? ? ? 1_555 B CYS 20 SG ? ? A CYS 51 A CYS 62 1_555 ? ? ? ? ? ? ? 2.068 ? ? disulf5 disulf ? ? B CYS 14 SG ? ? ? 1_555 B CYS 29 SG ? ? A CYS 56 A CYS 71 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf6 disulf ? ? B CYS 31 SG ? ? ? 1_555 B CYS 40 SG ? ? A CYS 73 A CYS 82 1_555 ? ? ? ? ? ? ? 2.083 ? ? disulf7 disulf ? ? C CYS 9 SG ? ? ? 1_555 C CYS 20 SG ? ? C CYS 51 C CYS 62 1_555 ? ? ? ? ? ? ? 2.074 ? ? disulf8 disulf ? ? C CYS 14 SG ? ? ? 1_555 C CYS 29 SG ? ? C CYS 56 C CYS 71 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf9 disulf ? ? C CYS 31 SG ? ? ? 1_555 C CYS 40 SG ? ? C CYS 73 C CYS 82 1_555 ? ? ? ? ? ? ? 2.085 ? ? covale1 covale one ? A SER 11 OG ? ? ? 1_555 D BGC . C1 ? ? B SER 53 D BGC 1 1_555 ? ? ? ? ? ? ? 1.207 ? O-Glycosylation covale2 covale one ? B SER 11 OG ? ? ? 1_555 E BGC . C1 ? ? A SER 53 E BGC 1 1_555 ? ? ? ? ? ? ? 1.419 ? O-Glycosylation covale3 covale one ? C SER 11 OG ? ? ? 1_555 F BGC . C1 ? ? C SER 53 F BGC 1 1_555 ? ? ? ? ? ? ? 1.303 ? O-Glycosylation covale4 covale both ? D BGC . O3 ? ? ? 1_555 D XYS . C1 ? ? D BGC 1 D XYS 2 1_555 ? ? ? ? ? ? ? 1.425 sing ? covale5 covale both ? D XYS . O3 ? ? ? 1_555 D XYS . C1 ? ? D XYS 2 D XYS 3 1_555 ? ? ? ? ? ? ? 1.430 sing ? covale6 covale both ? E BGC . O3 ? ? ? 1_555 E XYS . C1 ? ? E BGC 1 E XYS 2 1_555 ? ? ? ? ? ? ? 1.421 sing ? covale7 covale both ? E XYS . O3 ? ? ? 1_555 E XYS . C1 ? ? E XYS 2 E XYS 3 1_555 ? ? ? ? ? ? ? 1.408 sing ? covale8 covale both ? F BGC . O3 ? ? ? 1_555 F XYS . C1 ? ? F BGC 1 F XYS 2 1_555 ? ? ? ? ? ? ? 1.432 sing ? covale9 covale both ? F XYS . O3 ? ? ? 1_555 F XYS . C1 ? ? F XYS 2 F XYS 3 1_555 ? ? ? ? ? ? ? 1.430 sing ? metalc1 metalc ? ? A ASP 5 OD2 ? ? ? 1_555 G CA . CA ? ? B ASP 47 B CA 102 1_555 ? ? ? ? ? ? ? 2.589 ? ? metalc2 metalc ? ? A GLY 6 O ? ? ? 1_555 G CA . CA ? ? B GLY 48 B CA 102 1_555 ? ? ? ? ? ? ? 2.364 ? ? metalc3 metalc ? ? A GLN 8 OE1 ? ? ? 1_555 G CA . CA ? ? B GLN 50 B CA 102 1_555 ? ? ? ? ? ? ? 2.438 ? ? metalc4 metalc ? ? A ASN 16 OD1 ? ? ? 1_555 H CA . CA ? ? B ASN 58 B CA 103 1_555 ? ? ? ? ? ? ? 2.292 ? ? metalc5 metalc ? ? A ASP 22 OD1 ? ? ? 1_555 G CA . CA ? ? B ASP 64 B CA 102 1_555 ? ? ? ? ? ? ? 2.504 ? ? metalc6 metalc ? ? A ASP 22 OD2 ? ? ? 1_555 G CA . CA ? ? B ASP 64 B CA 102 1_555 ? ? ? ? ? ? ? 2.454 ? ? metalc7 metalc ? ? A ASP 23 O ? ? ? 1_555 G CA . CA ? ? B ASP 65 B CA 102 1_555 ? ? ? ? ? ? ? 2.300 ? ? metalc8 metalc ? ? G CA . CA ? ? ? 1_555 C ASN 16 OD1 ? ? B CA 102 C ASN 58 1_555 ? ? ? ? ? ? ? 2.256 ? ? metalc9 metalc ? ? H CA . CA ? ? ? 1_555 B ASP 5 OD1 ? ? B CA 103 A ASP 47 1_555 ? ? ? ? ? ? ? 2.684 ? ? metalc10 metalc ? ? H CA . CA ? ? ? 1_555 B GLY 6 O ? ? B CA 103 A GLY 48 1_555 ? ? ? ? ? ? ? 2.389 ? ? metalc11 metalc ? ? H CA . CA ? ? ? 1_555 B GLN 8 OE1 ? ? B CA 103 A GLN 50 1_555 ? ? ? ? ? ? ? 2.341 ? ? metalc12 metalc ? ? H CA . CA ? ? ? 1_555 B ASP 22 OD1 ? ? B CA 103 A ASP 64 1_555 ? ? ? ? ? ? ? 2.491 ? ? metalc13 metalc ? ? H CA . CA ? ? ? 1_555 B ASP 22 OD2 ? ? B CA 103 A ASP 64 1_555 ? ? ? ? ? ? ? 2.500 ? ? metalc14 metalc ? ? H CA . CA ? ? ? 1_555 B ASP 23 O ? ? B CA 103 A ASP 65 1_555 ? ? ? ? ? ? ? 2.422 ? ? metalc15 metalc ? ? B ASN 16 OD1 ? ? ? 1_555 I CA . CA ? ? A ASN 58 C CA 102 1_556 ? ? ? ? ? ? ? 2.395 ? ? metalc16 metalc ? ? C ASP 5 OD2 ? ? ? 1_555 I CA . CA ? ? C ASP 47 C CA 102 1_555 ? ? ? ? ? ? ? 2.905 ? ? metalc17 metalc ? ? C GLY 6 O ? ? ? 1_555 I CA . CA ? ? C GLY 48 C CA 102 1_555 ? ? ? ? ? ? ? 2.398 ? ? metalc18 metalc ? ? C GLN 8 OE1 ? ? ? 1_555 I CA . CA ? ? C GLN 50 C CA 102 1_555 ? ? ? ? ? ? ? 2.373 ? ? metalc19 metalc ? ? C ASP 22 OD1 ? ? ? 1_555 I CA . CA ? ? C ASP 64 C CA 102 1_555 ? ? ? ? ? ? ? 2.487 ? ? metalc20 metalc ? ? C ASP 22 OD2 ? ? ? 1_555 I CA . CA ? ? C ASP 64 C CA 102 1_555 ? ? ? ? ? ? ? 2.611 ? ? metalc21 metalc ? ? C ASP 23 O ? ? ? 1_555 I CA . CA ? ? C ASP 65 C CA 102 1_555 ? ? ? ? ? ? ? 2.342 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 19 ? ASP A 22 ? SER B 61 ASP B 64 AA1 2 TYR A 27 ? TRP A 30 ? TYR B 69 TRP B 72 AA2 1 SER B 19 ? ASP B 23 ? SER A 61 ASP A 65 AA2 2 SER B 26 ? TRP B 30 ? SER A 68 TRP A 72 AA3 1 SER C 19 ? ASP C 23 ? SER C 61 ASP C 65 AA3 2 SER C 26 ? TRP C 30 ? SER C 68 TRP C 72 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N SER A 19 ? N SER B 61 O TRP A 30 ? O TRP B 72 AA2 1 2 N SER B 19 ? N SER A 61 O TRP B 30 ? O TRP A 72 AA3 1 2 N SER C 19 ? N SER C 61 O TRP C 30 ? O TRP C 72 # _atom_sites.entry_id 5VYG _atom_sites.fract_transf_matrix[1][1] 0.010820 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000487 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021349 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026867 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 43 43 MET MET B . n A 1 2 ASP 2 44 44 ASP ASP B . n A 1 3 ILE 3 45 45 ILE ILE B . n A 1 4 VAL 4 46 46 VAL VAL B . n A 1 5 ASP 5 47 47 ASP ASP B . n A 1 6 GLY 6 48 48 GLY GLY B . n A 1 7 ASP 7 49 49 ASP ASP B . n A 1 8 GLN 8 50 50 GLN GLN B . n A 1 9 CYS 9 51 51 CYS CYS B . n A 1 10 GLU 10 52 52 GLU GLU B . n A 1 11 SER 11 53 53 SER SER B . n A 1 12 ASN 12 54 54 ASN ASN B . n A 1 13 PRO 13 55 55 PRO PRO B . n A 1 14 CYS 14 56 56 CYS CYS B . n A 1 15 LEU 15 57 57 LEU LEU B . n A 1 16 ASN 16 58 58 ASN ASN B . n A 1 17 GLY 17 59 59 GLY GLY B . n A 1 18 GLY 18 60 60 GLY GLY B . n A 1 19 SER 19 61 61 SER SER B . n A 1 20 CYS 20 62 62 CYS CYS B . n A 1 21 LYS 21 63 63 LYS LYS B . n A 1 22 ASP 22 64 64 ASP ASP B . n A 1 23 ASP 23 65 65 ASP ASP B . n A 1 24 ILE 24 66 66 ILE ILE B . n A 1 25 ASN 25 67 67 ASN ASN B . n A 1 26 SER 26 68 68 SER SER B . n A 1 27 TYR 27 69 69 TYR TYR B . n A 1 28 GLU 28 70 70 GLU GLU B . n A 1 29 CYS 29 71 71 CYS CYS B . n A 1 30 TRP 30 72 72 TRP TRP B . n A 1 31 CYS 31 73 73 CYS CYS B . n A 1 32 PRO 32 74 74 PRO PRO B . n A 1 33 PHE 33 75 75 PHE PHE B . n A 1 34 GLY 34 76 76 GLY GLY B . n A 1 35 PHE 35 77 77 PHE PHE B . n A 1 36 GLU 36 78 78 GLU GLU B . n A 1 37 GLY 37 79 79 GLY GLY B . n A 1 38 LYS 38 80 80 LYS LYS B . n A 1 39 ASN 39 81 81 ASN ASN B . n A 1 40 CYS 40 82 82 CYS CYS B . n A 1 41 GLU 41 83 83 GLU GLU B . n A 1 42 LEU 42 84 84 LEU LEU B . n A 1 43 LEU 43 85 85 LEU LEU B . n A 1 44 GLU 44 86 ? ? ? B . n A 1 45 HIS 45 87 ? ? ? B . n A 1 46 HIS 46 88 ? ? ? B . n A 1 47 HIS 47 89 ? ? ? B . n A 1 48 HIS 48 90 ? ? ? B . n A 1 49 HIS 49 91 ? ? ? B . n A 1 50 HIS 50 92 ? ? ? B . n B 1 1 MET 1 43 43 MET MET A . n B 1 2 ASP 2 44 44 ASP ASP A . n B 1 3 ILE 3 45 45 ILE ILE A . n B 1 4 VAL 4 46 46 VAL VAL A . n B 1 5 ASP 5 47 47 ASP ASP A . n B 1 6 GLY 6 48 48 GLY GLY A . n B 1 7 ASP 7 49 49 ASP ASP A . n B 1 8 GLN 8 50 50 GLN GLN A . n B 1 9 CYS 9 51 51 CYS CYS A . n B 1 10 GLU 10 52 52 GLU GLU A . n B 1 11 SER 11 53 53 SER SER A . n B 1 12 ASN 12 54 54 ASN ASN A . n B 1 13 PRO 13 55 55 PRO PRO A . n B 1 14 CYS 14 56 56 CYS CYS A . n B 1 15 LEU 15 57 57 LEU LEU A . n B 1 16 ASN 16 58 58 ASN ASN A . n B 1 17 GLY 17 59 59 GLY GLY A . n B 1 18 GLY 18 60 60 GLY GLY A . n B 1 19 SER 19 61 61 SER SER A . n B 1 20 CYS 20 62 62 CYS CYS A . n B 1 21 LYS 21 63 63 LYS LYS A . n B 1 22 ASP 22 64 64 ASP ASP A . n B 1 23 ASP 23 65 65 ASP ASP A . n B 1 24 ILE 24 66 66 ILE ILE A . n B 1 25 ASN 25 67 67 ASN ASN A . n B 1 26 SER 26 68 68 SER SER A . n B 1 27 TYR 27 69 69 TYR TYR A . n B 1 28 GLU 28 70 70 GLU GLU A . n B 1 29 CYS 29 71 71 CYS CYS A . n B 1 30 TRP 30 72 72 TRP TRP A . n B 1 31 CYS 31 73 73 CYS CYS A . n B 1 32 PRO 32 74 74 PRO PRO A . n B 1 33 PHE 33 75 75 PHE PHE A . n B 1 34 GLY 34 76 76 GLY GLY A . n B 1 35 PHE 35 77 77 PHE PHE A . n B 1 36 GLU 36 78 78 GLU GLU A . n B 1 37 GLY 37 79 79 GLY GLY A . n B 1 38 LYS 38 80 80 LYS LYS A . n B 1 39 ASN 39 81 81 ASN ASN A . n B 1 40 CYS 40 82 82 CYS CYS A . n B 1 41 GLU 41 83 83 GLU GLU A . n B 1 42 LEU 42 84 84 LEU LEU A . n B 1 43 LEU 43 85 85 LEU LEU A . n B 1 44 GLU 44 86 ? ? ? A . n B 1 45 HIS 45 87 ? ? ? A . n B 1 46 HIS 46 88 ? ? ? A . n B 1 47 HIS 47 89 ? ? ? A . n B 1 48 HIS 48 90 ? ? ? A . n B 1 49 HIS 49 91 ? ? ? A . n B 1 50 HIS 50 92 ? ? ? A . n C 1 1 MET 1 43 ? ? ? C . n C 1 2 ASP 2 44 44 ASP ASP C . n C 1 3 ILE 3 45 45 ILE ILE C . n C 1 4 VAL 4 46 46 VAL VAL C . n C 1 5 ASP 5 47 47 ASP ASP C . n C 1 6 GLY 6 48 48 GLY GLY C . n C 1 7 ASP 7 49 49 ASP ASP C . n C 1 8 GLN 8 50 50 GLN GLN C . n C 1 9 CYS 9 51 51 CYS CYS C . n C 1 10 GLU 10 52 52 GLU GLU C . n C 1 11 SER 11 53 53 SER SER C . n C 1 12 ASN 12 54 54 ASN ASN C . n C 1 13 PRO 13 55 55 PRO PRO C . n C 1 14 CYS 14 56 56 CYS CYS C . n C 1 15 LEU 15 57 57 LEU LEU C . n C 1 16 ASN 16 58 58 ASN ASN C . n C 1 17 GLY 17 59 59 GLY GLY C . n C 1 18 GLY 18 60 60 GLY GLY C . n C 1 19 SER 19 61 61 SER SER C . n C 1 20 CYS 20 62 62 CYS CYS C . n C 1 21 LYS 21 63 63 LYS LYS C . n C 1 22 ASP 22 64 64 ASP ASP C . n C 1 23 ASP 23 65 65 ASP ASP C . n C 1 24 ILE 24 66 66 ILE ILE C . n C 1 25 ASN 25 67 67 ASN ASN C . n C 1 26 SER 26 68 68 SER SER C . n C 1 27 TYR 27 69 69 TYR TYR C . n C 1 28 GLU 28 70 70 GLU GLU C . n C 1 29 CYS 29 71 71 CYS CYS C . n C 1 30 TRP 30 72 72 TRP TRP C . n C 1 31 CYS 31 73 73 CYS CYS C . n C 1 32 PRO 32 74 74 PRO PRO C . n C 1 33 PHE 33 75 75 PHE PHE C . n C 1 34 GLY 34 76 76 GLY GLY C . n C 1 35 PHE 35 77 77 PHE PHE C . n C 1 36 GLU 36 78 78 GLU GLU C . n C 1 37 GLY 37 79 79 GLY GLY C . n C 1 38 LYS 38 80 80 LYS LYS C . n C 1 39 ASN 39 81 81 ASN ASN C . n C 1 40 CYS 40 82 82 CYS CYS C . n C 1 41 GLU 41 83 83 GLU GLU C . n C 1 42 LEU 42 84 84 LEU LEU C . n C 1 43 LEU 43 85 85 LEU LEU C . n C 1 44 GLU 44 86 ? ? ? C . n C 1 45 HIS 45 87 ? ? ? C . n C 1 46 HIS 46 88 ? ? ? C . n C 1 47 HIS 47 89 ? ? ? C . n C 1 48 HIS 48 90 ? ? ? C . n C 1 49 HIS 49 91 ? ? ? C . n C 1 50 HIS 50 92 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 CA 1 102 1 CA CA B . H 3 CA 1 103 3 CA CA B . I 3 CA 1 102 2 CA CA C . J 4 HOH 1 201 33 HOH HOH B . J 4 HOH 2 202 9 HOH HOH B . J 4 HOH 3 203 36 HOH HOH B . J 4 HOH 4 204 34 HOH HOH B . J 4 HOH 5 205 21 HOH HOH B . J 4 HOH 6 206 2 HOH HOH B . J 4 HOH 7 207 12 HOH HOH B . J 4 HOH 8 208 31 HOH HOH B . J 4 HOH 9 209 1 HOH HOH B . J 4 HOH 10 210 39 HOH HOH B . K 4 HOH 1 201 22 HOH HOH A . K 4 HOH 2 202 17 HOH HOH A . K 4 HOH 3 203 28 HOH HOH A . K 4 HOH 4 204 37 HOH HOH A . K 4 HOH 5 205 35 HOH HOH A . K 4 HOH 6 206 32 HOH HOH A . K 4 HOH 7 207 23 HOH HOH A . K 4 HOH 8 208 20 HOH HOH A . K 4 HOH 9 209 15 HOH HOH A . K 4 HOH 10 210 40 HOH HOH A . K 4 HOH 11 211 7 HOH HOH A . K 4 HOH 12 212 11 HOH HOH A . L 4 HOH 1 201 26 HOH HOH C . L 4 HOH 2 202 14 HOH HOH C . L 4 HOH 3 203 16 HOH HOH C . L 4 HOH 4 204 30 HOH HOH C . L 4 HOH 5 205 19 HOH HOH C . L 4 HOH 6 206 18 HOH HOH C . L 4 HOH 7 207 6 HOH HOH C . L 4 HOH 8 208 10 HOH HOH C . L 4 HOH 9 209 8 HOH HOH C . L 4 HOH 10 210 24 HOH HOH C . L 4 HOH 11 211 13 HOH HOH C . L 4 HOH 12 212 5 HOH HOH C . L 4 HOH 13 213 27 HOH HOH C . L 4 HOH 14 214 38 HOH HOH C . L 4 HOH 15 215 29 HOH HOH C . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 3 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,G,H,J 2 1 B,E,K 3 1 C,F,I,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 5 ? B ASP 47 ? 1_555 CA ? G CA . ? B CA 102 ? 1_555 O ? A GLY 6 ? B GLY 48 ? 1_555 94.1 ? 2 OD2 ? A ASP 5 ? B ASP 47 ? 1_555 CA ? G CA . ? B CA 102 ? 1_555 OE1 ? A GLN 8 ? B GLN 50 ? 1_555 77.8 ? 3 O ? A GLY 6 ? B GLY 48 ? 1_555 CA ? G CA . ? B CA 102 ? 1_555 OE1 ? A GLN 8 ? B GLN 50 ? 1_555 88.2 ? 4 OD2 ? A ASP 5 ? B ASP 47 ? 1_555 CA ? G CA . ? B CA 102 ? 1_555 OD1 ? A ASP 22 ? B ASP 64 ? 1_555 150.0 ? 5 O ? A GLY 6 ? B GLY 48 ? 1_555 CA ? G CA . ? B CA 102 ? 1_555 OD1 ? A ASP 22 ? B ASP 64 ? 1_555 92.4 ? 6 OE1 ? A GLN 8 ? B GLN 50 ? 1_555 CA ? G CA . ? B CA 102 ? 1_555 OD1 ? A ASP 22 ? B ASP 64 ? 1_555 73.2 ? 7 OD2 ? A ASP 5 ? B ASP 47 ? 1_555 CA ? G CA . ? B CA 102 ? 1_555 OD2 ? A ASP 22 ? B ASP 64 ? 1_555 155.7 ? 8 O ? A GLY 6 ? B GLY 48 ? 1_555 CA ? G CA . ? B CA 102 ? 1_555 OD2 ? A ASP 22 ? B ASP 64 ? 1_555 91.4 ? 9 OE1 ? A GLN 8 ? B GLN 50 ? 1_555 CA ? G CA . ? B CA 102 ? 1_555 OD2 ? A ASP 22 ? B ASP 64 ? 1_555 126.0 ? 10 OD1 ? A ASP 22 ? B ASP 64 ? 1_555 CA ? G CA . ? B CA 102 ? 1_555 OD2 ? A ASP 22 ? B ASP 64 ? 1_555 52.9 ? 11 OD2 ? A ASP 5 ? B ASP 47 ? 1_555 CA ? G CA . ? B CA 102 ? 1_555 O ? A ASP 23 ? B ASP 65 ? 1_555 87.0 ? 12 O ? A GLY 6 ? B GLY 48 ? 1_555 CA ? G CA . ? B CA 102 ? 1_555 O ? A ASP 23 ? B ASP 65 ? 1_555 173.0 ? 13 OE1 ? A GLN 8 ? B GLN 50 ? 1_555 CA ? G CA . ? B CA 102 ? 1_555 O ? A ASP 23 ? B ASP 65 ? 1_555 85.3 ? 14 OD1 ? A ASP 22 ? B ASP 64 ? 1_555 CA ? G CA . ? B CA 102 ? 1_555 O ? A ASP 23 ? B ASP 65 ? 1_555 83.3 ? 15 OD2 ? A ASP 22 ? B ASP 64 ? 1_555 CA ? G CA . ? B CA 102 ? 1_555 O ? A ASP 23 ? B ASP 65 ? 1_555 90.4 ? 16 OD2 ? A ASP 5 ? B ASP 47 ? 1_555 CA ? G CA . ? B CA 102 ? 1_555 OD1 ? C ASN 16 ? C ASN 58 ? 1_555 75.8 ? 17 O ? A GLY 6 ? B GLY 48 ? 1_555 CA ? G CA . ? B CA 102 ? 1_555 OD1 ? C ASN 16 ? C ASN 58 ? 1_555 98.9 ? 18 OE1 ? A GLN 8 ? B GLN 50 ? 1_555 CA ? G CA . ? B CA 102 ? 1_555 OD1 ? C ASN 16 ? C ASN 58 ? 1_555 153.0 ? 19 OD1 ? A ASP 22 ? B ASP 64 ? 1_555 CA ? G CA . ? B CA 102 ? 1_555 OD1 ? C ASN 16 ? C ASN 58 ? 1_555 131.9 ? 20 OD2 ? A ASP 22 ? B ASP 64 ? 1_555 CA ? G CA . ? B CA 102 ? 1_555 OD1 ? C ASN 16 ? C ASN 58 ? 1_555 80.0 ? 21 O ? A ASP 23 ? B ASP 65 ? 1_555 CA ? G CA . ? B CA 102 ? 1_555 OD1 ? C ASN 16 ? C ASN 58 ? 1_555 88.1 ? 22 OD1 ? A ASN 16 ? B ASN 58 ? 1_555 CA ? H CA . ? B CA 103 ? 1_555 OD1 ? B ASP 5 ? A ASP 47 ? 1_555 71.7 ? 23 OD1 ? A ASN 16 ? B ASN 58 ? 1_555 CA ? H CA . ? B CA 103 ? 1_555 O ? B GLY 6 ? A GLY 48 ? 1_555 97.0 ? 24 OD1 ? B ASP 5 ? A ASP 47 ? 1_555 CA ? H CA . ? B CA 103 ? 1_555 O ? B GLY 6 ? A GLY 48 ? 1_555 91.6 ? 25 OD1 ? A ASN 16 ? B ASN 58 ? 1_555 CA ? H CA . ? B CA 103 ? 1_555 OE1 ? B GLN 8 ? A GLN 50 ? 1_555 158.1 ? 26 OD1 ? B ASP 5 ? A ASP 47 ? 1_555 CA ? H CA . ? B CA 103 ? 1_555 OE1 ? B GLN 8 ? A GLN 50 ? 1_555 86.4 ? 27 O ? B GLY 6 ? A GLY 48 ? 1_555 CA ? H CA . ? B CA 103 ? 1_555 OE1 ? B GLN 8 ? A GLN 50 ? 1_555 84.6 ? 28 OD1 ? A ASN 16 ? B ASN 58 ? 1_555 CA ? H CA . ? B CA 103 ? 1_555 OD1 ? B ASP 22 ? A ASP 64 ? 1_555 128.5 ? 29 OD1 ? B ASP 5 ? A ASP 47 ? 1_555 CA ? H CA . ? B CA 103 ? 1_555 OD1 ? B ASP 22 ? A ASP 64 ? 1_555 158.9 ? 30 O ? B GLY 6 ? A GLY 48 ? 1_555 CA ? H CA . ? B CA 103 ? 1_555 OD1 ? B ASP 22 ? A ASP 64 ? 1_555 91.7 ? 31 OE1 ? B GLN 8 ? A GLN 50 ? 1_555 CA ? H CA . ? B CA 103 ? 1_555 OD1 ? B ASP 22 ? A ASP 64 ? 1_555 73.1 ? 32 OD1 ? A ASN 16 ? B ASN 58 ? 1_555 CA ? H CA . ? B CA 103 ? 1_555 OD2 ? B ASP 22 ? A ASP 64 ? 1_555 76.3 ? 33 OD1 ? B ASP 5 ? A ASP 47 ? 1_555 CA ? H CA . ? B CA 103 ? 1_555 OD2 ? B ASP 22 ? A ASP 64 ? 1_555 147.9 ? 34 O ? B GLY 6 ? A GLY 48 ? 1_555 CA ? H CA . ? B CA 103 ? 1_555 OD2 ? B ASP 22 ? A ASP 64 ? 1_555 95.2 ? 35 OE1 ? B GLN 8 ? A GLN 50 ? 1_555 CA ? H CA . ? B CA 103 ? 1_555 OD2 ? B ASP 22 ? A ASP 64 ? 1_555 125.4 ? 36 OD1 ? B ASP 22 ? A ASP 64 ? 1_555 CA ? H CA . ? B CA 103 ? 1_555 OD2 ? B ASP 22 ? A ASP 64 ? 1_555 52.3 ? 37 OD1 ? A ASN 16 ? B ASN 58 ? 1_555 CA ? H CA . ? B CA 103 ? 1_555 O ? B ASP 23 ? A ASP 65 ? 1_555 94.6 ? 38 OD1 ? B ASP 5 ? A ASP 47 ? 1_555 CA ? H CA . ? B CA 103 ? 1_555 O ? B ASP 23 ? A ASP 65 ? 1_555 87.5 ? 39 O ? B GLY 6 ? A GLY 48 ? 1_555 CA ? H CA . ? B CA 103 ? 1_555 O ? B ASP 23 ? A ASP 65 ? 1_555 167.4 ? 40 OE1 ? B GLN 8 ? A GLN 50 ? 1_555 CA ? H CA . ? B CA 103 ? 1_555 O ? B ASP 23 ? A ASP 65 ? 1_555 82.8 ? 41 OD1 ? B ASP 22 ? A ASP 64 ? 1_555 CA ? H CA . ? B CA 103 ? 1_555 O ? B ASP 23 ? A ASP 65 ? 1_555 84.8 ? 42 OD2 ? B ASP 22 ? A ASP 64 ? 1_555 CA ? H CA . ? B CA 103 ? 1_555 O ? B ASP 23 ? A ASP 65 ? 1_555 92.2 ? 43 OD1 ? B ASN 16 ? A ASN 58 ? 1_555 CA ? I CA . ? C CA 102 ? 1_556 OD2 ? C ASP 5 ? C ASP 47 ? 1_555 23.9 ? 44 OD1 ? B ASN 16 ? A ASN 58 ? 1_555 CA ? I CA . ? C CA 102 ? 1_556 O ? C GLY 6 ? C GLY 48 ? 1_555 22.8 ? 45 OD2 ? C ASP 5 ? C ASP 47 ? 1_555 CA ? I CA . ? C CA 102 ? 1_556 O ? C GLY 6 ? C GLY 48 ? 1_555 5.4 ? 46 OD1 ? B ASN 16 ? A ASN 58 ? 1_555 CA ? I CA . ? C CA 102 ? 1_556 OE1 ? C GLN 8 ? C GLN 50 ? 1_555 26.9 ? 47 OD2 ? C ASP 5 ? C ASP 47 ? 1_555 CA ? I CA . ? C CA 102 ? 1_556 OE1 ? C GLN 8 ? C GLN 50 ? 1_555 4.0 ? 48 O ? C GLY 6 ? C GLY 48 ? 1_555 CA ? I CA . ? C CA 102 ? 1_556 OE1 ? C GLN 8 ? C GLN 50 ? 1_555 5.1 ? 49 OD1 ? B ASN 16 ? A ASN 58 ? 1_555 CA ? I CA . ? C CA 102 ? 1_556 OD1 ? C ASP 22 ? C ASP 64 ? 1_555 28.0 ? 50 OD2 ? C ASP 5 ? C ASP 47 ? 1_555 CA ? I CA . ? C CA 102 ? 1_556 OD1 ? C ASP 22 ? C ASP 64 ? 1_555 7.8 ? 51 O ? C GLY 6 ? C GLY 48 ? 1_555 CA ? I CA . ? C CA 102 ? 1_556 OD1 ? C ASP 22 ? C ASP 64 ? 1_555 5.2 ? 52 OE1 ? C GLN 8 ? C GLN 50 ? 1_555 CA ? I CA . ? C CA 102 ? 1_556 OD1 ? C ASP 22 ? C ASP 64 ? 1_555 4.3 ? 53 OD1 ? B ASN 16 ? A ASN 58 ? 1_555 CA ? I CA . ? C CA 102 ? 1_556 OD2 ? C ASP 22 ? C ASP 64 ? 1_555 26.9 ? 54 OD2 ? C ASP 5 ? C ASP 47 ? 1_555 CA ? I CA . ? C CA 102 ? 1_556 OD2 ? C ASP 22 ? C ASP 64 ? 1_555 7.9 ? 55 O ? C GLY 6 ? C GLY 48 ? 1_555 CA ? I CA . ? C CA 102 ? 1_556 OD2 ? C ASP 22 ? C ASP 64 ? 1_555 4.3 ? 56 OE1 ? C GLN 8 ? C GLN 50 ? 1_555 CA ? I CA . ? C CA 102 ? 1_556 OD2 ? C ASP 22 ? C ASP 64 ? 1_555 5.0 ? 57 OD1 ? C ASP 22 ? C ASP 64 ? 1_555 CA ? I CA . ? C CA 102 ? 1_556 OD2 ? C ASP 22 ? C ASP 64 ? 1_555 1.5 ? 58 OD1 ? B ASN 16 ? A ASN 58 ? 1_555 CA ? I CA . ? C CA 102 ? 1_556 O ? C ASP 23 ? C ASP 65 ? 1_555 28.4 ? 59 OD2 ? C ASP 5 ? C ASP 47 ? 1_555 CA ? I CA . ? C CA 102 ? 1_556 O ? C ASP 23 ? C ASP 65 ? 1_555 5.5 ? 60 O ? C GLY 6 ? C GLY 48 ? 1_555 CA ? I CA . ? C CA 102 ? 1_556 O ? C ASP 23 ? C ASP 65 ? 1_555 6.2 ? 61 OE1 ? C GLN 8 ? C GLN 50 ? 1_555 CA ? I CA . ? C CA 102 ? 1_556 O ? C ASP 23 ? C ASP 65 ? 1_555 1.6 ? 62 OD1 ? C ASP 22 ? C ASP 64 ? 1_555 CA ? I CA . ? C CA 102 ? 1_556 O ? C ASP 23 ? C ASP 65 ? 1_555 3.8 ? 63 OD2 ? C ASP 22 ? C ASP 64 ? 1_555 CA ? I CA . ? C CA 102 ? 1_556 O ? C ASP 23 ? C ASP 65 ? 1_555 4.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-08-09 2 'Structure model' 1 1 2018-02-28 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2023-10-04 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Data collection' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Non-polymer description' 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' 'Data collection' 9 4 'Structure model' 'Database references' 10 4 'Structure model' 'Refinement description' 11 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' atom_site 4 3 'Structure model' chem_comp 5 3 'Structure model' entity 6 3 'Structure model' pdbx_branch_scheme 7 3 'Structure model' pdbx_chem_comp_identifier 8 3 'Structure model' pdbx_entity_branch 9 3 'Structure model' pdbx_entity_branch_descriptor 10 3 'Structure model' pdbx_entity_branch_link 11 3 'Structure model' pdbx_entity_branch_list 12 3 'Structure model' pdbx_entity_nonpoly 13 3 'Structure model' pdbx_nonpoly_scheme 14 3 'Structure model' pdbx_struct_assembly_gen 15 3 'Structure model' pdbx_struct_conn_angle 16 3 'Structure model' pdbx_validate_close_contact 17 3 'Structure model' struct_asym 18 3 'Structure model' struct_conn 19 3 'Structure model' struct_conn_type 20 3 'Structure model' struct_site 21 3 'Structure model' struct_site_gen 22 4 'Structure model' chem_comp 23 4 'Structure model' chem_comp_atom 24 4 'Structure model' chem_comp_bond 25 4 'Structure model' database_2 26 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 3 'Structure model' '_atom_site.B_iso_or_equiv' 14 3 'Structure model' '_atom_site.Cartn_x' 15 3 'Structure model' '_atom_site.Cartn_y' 16 3 'Structure model' '_atom_site.Cartn_z' 17 3 'Structure model' '_atom_site.auth_asym_id' 18 3 'Structure model' '_atom_site.auth_atom_id' 19 3 'Structure model' '_atom_site.auth_comp_id' 20 3 'Structure model' '_atom_site.auth_seq_id' 21 3 'Structure model' '_atom_site.label_asym_id' 22 3 'Structure model' '_atom_site.label_atom_id' 23 3 'Structure model' '_atom_site.label_comp_id' 24 3 'Structure model' '_atom_site.label_entity_id' 25 3 'Structure model' '_atom_site.type_symbol' 26 3 'Structure model' '_chem_comp.formula' 27 3 'Structure model' '_chem_comp.formula_weight' 28 3 'Structure model' '_chem_comp.id' 29 3 'Structure model' '_chem_comp.mon_nstd_flag' 30 3 'Structure model' '_chem_comp.name' 31 3 'Structure model' '_chem_comp.type' 32 3 'Structure model' '_entity.formula_weight' 33 3 'Structure model' '_entity.pdbx_description' 34 3 'Structure model' '_entity.type' 35 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 36 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 37 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 38 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 39 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 40 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 41 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 42 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 43 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 44 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_symmetry' 45 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 46 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 47 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 48 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 49 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 50 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 51 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 52 3 'Structure model' '_pdbx_struct_conn_angle.value' 53 3 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_2' 54 3 'Structure model' '_pdbx_validate_close_contact.auth_atom_id_2' 55 3 'Structure model' '_pdbx_validate_close_contact.auth_comp_id_2' 56 3 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 57 3 'Structure model' '_struct_asym.entity_id' 58 3 'Structure model' '_struct_conn_type.id' 59 4 'Structure model' '_chem_comp.pdbx_synonyms' 60 4 'Structure model' '_database_2.pdbx_DOI' 61 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.6.0117 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG A SER 53 ? ? O5 E BGC 1 ? ? 1.75 2 1 OG B SER 53 ? ? O5 D BGC 1 ? ? 2.00 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 68 ? ? 179.64 170.95 2 1 PHE C 75 ? ? -36.92 123.93 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B LEU 85 ? CG ? A LEU 43 CG 2 1 Y 1 B LEU 85 ? CD1 ? A LEU 43 CD1 3 1 Y 1 B LEU 85 ? CD2 ? A LEU 43 CD2 4 1 Y 1 A MET 43 ? CG ? B MET 1 CG 5 1 Y 1 A MET 43 ? SD ? B MET 1 SD 6 1 Y 1 A MET 43 ? CE ? B MET 1 CE 7 1 Y 1 A ASP 44 ? CG ? B ASP 2 CG 8 1 Y 1 A ASP 44 ? OD1 ? B ASP 2 OD1 9 1 Y 1 A ASP 44 ? OD2 ? B ASP 2 OD2 10 1 Y 1 A ILE 45 ? CG1 ? B ILE 3 CG1 11 1 Y 1 A ILE 45 ? CG2 ? B ILE 3 CG2 12 1 Y 1 A ILE 45 ? CD1 ? B ILE 3 CD1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B GLU 86 ? A GLU 44 2 1 Y 1 B HIS 87 ? A HIS 45 3 1 Y 1 B HIS 88 ? A HIS 46 4 1 Y 1 B HIS 89 ? A HIS 47 5 1 Y 1 B HIS 90 ? A HIS 48 6 1 Y 1 B HIS 91 ? A HIS 49 7 1 Y 1 B HIS 92 ? A HIS 50 8 1 Y 1 A GLU 86 ? B GLU 44 9 1 Y 1 A HIS 87 ? B HIS 45 10 1 Y 1 A HIS 88 ? B HIS 46 11 1 Y 1 A HIS 89 ? B HIS 47 12 1 Y 1 A HIS 90 ? B HIS 48 13 1 Y 1 A HIS 91 ? B HIS 49 14 1 Y 1 A HIS 92 ? B HIS 50 15 1 Y 1 C MET 43 ? C MET 1 16 1 Y 1 C GLU 86 ? C GLU 44 17 1 Y 1 C HIS 87 ? C HIS 45 18 1 Y 1 C HIS 88 ? C HIS 46 19 1 Y 1 C HIS 89 ? C HIS 47 20 1 Y 1 C HIS 90 ? C HIS 48 21 1 Y 1 C HIS 91 ? C HIS 49 22 1 Y 1 C HIS 92 ? C HIS 50 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 ASP N N N N 18 ASP CA C N S 19 ASP C C N N 20 ASP O O N N 21 ASP CB C N N 22 ASP CG C N N 23 ASP OD1 O N N 24 ASP OD2 O N N 25 ASP OXT O N N 26 ASP H H N N 27 ASP H2 H N N 28 ASP HA H N N 29 ASP HB2 H N N 30 ASP HB3 H N N 31 ASP HD2 H N N 32 ASP HXT H N N 33 BGC C2 C N R 34 BGC C3 C N S 35 BGC C4 C N S 36 BGC C5 C N R 37 BGC C6 C N N 38 BGC C1 C N R 39 BGC O1 O N N 40 BGC O2 O N N 41 BGC O3 O N N 42 BGC O4 O N N 43 BGC O5 O N N 44 BGC O6 O N N 45 BGC H2 H N N 46 BGC H3 H N N 47 BGC H4 H N N 48 BGC H5 H N N 49 BGC H61 H N N 50 BGC H62 H N N 51 BGC H1 H N N 52 BGC HO1 H N N 53 BGC HO2 H N N 54 BGC HO3 H N N 55 BGC HO4 H N N 56 BGC HO6 H N N 57 CA CA CA N N 58 CYS N N N N 59 CYS CA C N R 60 CYS C C N N 61 CYS O O N N 62 CYS CB C N N 63 CYS SG S N N 64 CYS OXT O N N 65 CYS H H N N 66 CYS H2 H N N 67 CYS HA H N N 68 CYS HB2 H N N 69 CYS HB3 H N N 70 CYS HG H N N 71 CYS HXT H N N 72 GLN N N N N 73 GLN CA C N S 74 GLN C C N N 75 GLN O O N N 76 GLN CB C N N 77 GLN CG C N N 78 GLN CD C N N 79 GLN OE1 O N N 80 GLN NE2 N N N 81 GLN OXT O N N 82 GLN H H N N 83 GLN H2 H N N 84 GLN HA H N N 85 GLN HB2 H N N 86 GLN HB3 H N N 87 GLN HG2 H N N 88 GLN HG3 H N N 89 GLN HE21 H N N 90 GLN HE22 H N N 91 GLN HXT H N N 92 GLU N N N N 93 GLU CA C N S 94 GLU C C N N 95 GLU O O N N 96 GLU CB C N N 97 GLU CG C N N 98 GLU CD C N N 99 GLU OE1 O N N 100 GLU OE2 O N N 101 GLU OXT O N N 102 GLU H H N N 103 GLU H2 H N N 104 GLU HA H N N 105 GLU HB2 H N N 106 GLU HB3 H N N 107 GLU HG2 H N N 108 GLU HG3 H N N 109 GLU HE2 H N N 110 GLU HXT H N N 111 GLY N N N N 112 GLY CA C N N 113 GLY C C N N 114 GLY O O N N 115 GLY OXT O N N 116 GLY H H N N 117 GLY H2 H N N 118 GLY HA2 H N N 119 GLY HA3 H N N 120 GLY HXT H N N 121 HIS N N N N 122 HIS CA C N S 123 HIS C C N N 124 HIS O O N N 125 HIS CB C N N 126 HIS CG C Y N 127 HIS ND1 N Y N 128 HIS CD2 C Y N 129 HIS CE1 C Y N 130 HIS NE2 N Y N 131 HIS OXT O N N 132 HIS H H N N 133 HIS H2 H N N 134 HIS HA H N N 135 HIS HB2 H N N 136 HIS HB3 H N N 137 HIS HD1 H N N 138 HIS HD2 H N N 139 HIS HE1 H N N 140 HIS HE2 H N N 141 HIS HXT H N N 142 HOH O O N N 143 HOH H1 H N N 144 HOH H2 H N N 145 ILE N N N N 146 ILE CA C N S 147 ILE C C N N 148 ILE O O N N 149 ILE CB C N S 150 ILE CG1 C N N 151 ILE CG2 C N N 152 ILE CD1 C N N 153 ILE OXT O N N 154 ILE H H N N 155 ILE H2 H N N 156 ILE HA H N N 157 ILE HB H N N 158 ILE HG12 H N N 159 ILE HG13 H N N 160 ILE HG21 H N N 161 ILE HG22 H N N 162 ILE HG23 H N N 163 ILE HD11 H N N 164 ILE HD12 H N N 165 ILE HD13 H N N 166 ILE HXT H N N 167 LEU N N N N 168 LEU CA C N S 169 LEU C C N N 170 LEU O O N N 171 LEU CB C N N 172 LEU CG C N N 173 LEU CD1 C N N 174 LEU CD2 C N N 175 LEU OXT O N N 176 LEU H H N N 177 LEU H2 H N N 178 LEU HA H N N 179 LEU HB2 H N N 180 LEU HB3 H N N 181 LEU HG H N N 182 LEU HD11 H N N 183 LEU HD12 H N N 184 LEU HD13 H N N 185 LEU HD21 H N N 186 LEU HD22 H N N 187 LEU HD23 H N N 188 LEU HXT H N N 189 LYS N N N N 190 LYS CA C N S 191 LYS C C N N 192 LYS O O N N 193 LYS CB C N N 194 LYS CG C N N 195 LYS CD C N N 196 LYS CE C N N 197 LYS NZ N N N 198 LYS OXT O N N 199 LYS H H N N 200 LYS H2 H N N 201 LYS HA H N N 202 LYS HB2 H N N 203 LYS HB3 H N N 204 LYS HG2 H N N 205 LYS HG3 H N N 206 LYS HD2 H N N 207 LYS HD3 H N N 208 LYS HE2 H N N 209 LYS HE3 H N N 210 LYS HZ1 H N N 211 LYS HZ2 H N N 212 LYS HZ3 H N N 213 LYS HXT H N N 214 MET N N N N 215 MET CA C N S 216 MET C C N N 217 MET O O N N 218 MET CB C N N 219 MET CG C N N 220 MET SD S N N 221 MET CE C N N 222 MET OXT O N N 223 MET H H N N 224 MET H2 H N N 225 MET HA H N N 226 MET HB2 H N N 227 MET HB3 H N N 228 MET HG2 H N N 229 MET HG3 H N N 230 MET HE1 H N N 231 MET HE2 H N N 232 MET HE3 H N N 233 MET HXT H N N 234 PHE N N N N 235 PHE CA C N S 236 PHE C C N N 237 PHE O O N N 238 PHE CB C N N 239 PHE CG C Y N 240 PHE CD1 C Y N 241 PHE CD2 C Y N 242 PHE CE1 C Y N 243 PHE CE2 C Y N 244 PHE CZ C Y N 245 PHE OXT O N N 246 PHE H H N N 247 PHE H2 H N N 248 PHE HA H N N 249 PHE HB2 H N N 250 PHE HB3 H N N 251 PHE HD1 H N N 252 PHE HD2 H N N 253 PHE HE1 H N N 254 PHE HE2 H N N 255 PHE HZ H N N 256 PHE HXT H N N 257 PRO N N N N 258 PRO CA C N S 259 PRO C C N N 260 PRO O O N N 261 PRO CB C N N 262 PRO CG C N N 263 PRO CD C N N 264 PRO OXT O N N 265 PRO H H N N 266 PRO HA H N N 267 PRO HB2 H N N 268 PRO HB3 H N N 269 PRO HG2 H N N 270 PRO HG3 H N N 271 PRO HD2 H N N 272 PRO HD3 H N N 273 PRO HXT H N N 274 SER N N N N 275 SER CA C N S 276 SER C C N N 277 SER O O N N 278 SER CB C N N 279 SER OG O N N 280 SER OXT O N N 281 SER H H N N 282 SER H2 H N N 283 SER HA H N N 284 SER HB2 H N N 285 SER HB3 H N N 286 SER HG H N N 287 SER HXT H N N 288 TRP N N N N 289 TRP CA C N S 290 TRP C C N N 291 TRP O O N N 292 TRP CB C N N 293 TRP CG C Y N 294 TRP CD1 C Y N 295 TRP CD2 C Y N 296 TRP NE1 N Y N 297 TRP CE2 C Y N 298 TRP CE3 C Y N 299 TRP CZ2 C Y N 300 TRP CZ3 C Y N 301 TRP CH2 C Y N 302 TRP OXT O N N 303 TRP H H N N 304 TRP H2 H N N 305 TRP HA H N N 306 TRP HB2 H N N 307 TRP HB3 H N N 308 TRP HD1 H N N 309 TRP HE1 H N N 310 TRP HE3 H N N 311 TRP HZ2 H N N 312 TRP HZ3 H N N 313 TRP HH2 H N N 314 TRP HXT H N N 315 TYR N N N N 316 TYR CA C N S 317 TYR C C N N 318 TYR O O N N 319 TYR CB C N N 320 TYR CG C Y N 321 TYR CD1 C Y N 322 TYR CD2 C Y N 323 TYR CE1 C Y N 324 TYR CE2 C Y N 325 TYR CZ C Y N 326 TYR OH O N N 327 TYR OXT O N N 328 TYR H H N N 329 TYR H2 H N N 330 TYR HA H N N 331 TYR HB2 H N N 332 TYR HB3 H N N 333 TYR HD1 H N N 334 TYR HD2 H N N 335 TYR HE1 H N N 336 TYR HE2 H N N 337 TYR HH H N N 338 TYR HXT H N N 339 VAL N N N N 340 VAL CA C N S 341 VAL C C N N 342 VAL O O N N 343 VAL CB C N N 344 VAL CG1 C N N 345 VAL CG2 C N N 346 VAL OXT O N N 347 VAL H H N N 348 VAL H2 H N N 349 VAL HA H N N 350 VAL HB H N N 351 VAL HG11 H N N 352 VAL HG12 H N N 353 VAL HG13 H N N 354 VAL HG21 H N N 355 VAL HG22 H N N 356 VAL HG23 H N N 357 VAL HXT H N N 358 XYS C1 C N S 359 XYS C2 C N R 360 XYS C3 C N S 361 XYS C4 C N R 362 XYS C5 C N N 363 XYS O1 O N N 364 XYS O2 O N N 365 XYS O3 O N N 366 XYS O4 O N N 367 XYS O5 O N N 368 XYS H1 H N N 369 XYS H2 H N N 370 XYS H3 H N N 371 XYS H4 H N N 372 XYS H51 H N N 373 XYS H52 H N N 374 XYS HO1 H N N 375 XYS HO2 H N N 376 XYS HO3 H N N 377 XYS HO4 H N N 378 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 ASP N CA sing N N 17 ASP N H sing N N 18 ASP N H2 sing N N 19 ASP CA C sing N N 20 ASP CA CB sing N N 21 ASP CA HA sing N N 22 ASP C O doub N N 23 ASP C OXT sing N N 24 ASP CB CG sing N N 25 ASP CB HB2 sing N N 26 ASP CB HB3 sing N N 27 ASP CG OD1 doub N N 28 ASP CG OD2 sing N N 29 ASP OD2 HD2 sing N N 30 ASP OXT HXT sing N N 31 BGC C2 C3 sing N N 32 BGC C2 C1 sing N N 33 BGC C2 O2 sing N N 34 BGC C2 H2 sing N N 35 BGC C3 C4 sing N N 36 BGC C3 O3 sing N N 37 BGC C3 H3 sing N N 38 BGC C4 C5 sing N N 39 BGC C4 O4 sing N N 40 BGC C4 H4 sing N N 41 BGC C5 C6 sing N N 42 BGC C5 O5 sing N N 43 BGC C5 H5 sing N N 44 BGC C6 O6 sing N N 45 BGC C6 H61 sing N N 46 BGC C6 H62 sing N N 47 BGC C1 O1 sing N N 48 BGC C1 O5 sing N N 49 BGC C1 H1 sing N N 50 BGC O1 HO1 sing N N 51 BGC O2 HO2 sing N N 52 BGC O3 HO3 sing N N 53 BGC O4 HO4 sing N N 54 BGC O6 HO6 sing N N 55 CYS N CA sing N N 56 CYS N H sing N N 57 CYS N H2 sing N N 58 CYS CA C sing N N 59 CYS CA CB sing N N 60 CYS CA HA sing N N 61 CYS C O doub N N 62 CYS C OXT sing N N 63 CYS CB SG sing N N 64 CYS CB HB2 sing N N 65 CYS CB HB3 sing N N 66 CYS SG HG sing N N 67 CYS OXT HXT sing N N 68 GLN N CA sing N N 69 GLN N H sing N N 70 GLN N H2 sing N N 71 GLN CA C sing N N 72 GLN CA CB sing N N 73 GLN CA HA sing N N 74 GLN C O doub N N 75 GLN C OXT sing N N 76 GLN CB CG sing N N 77 GLN CB HB2 sing N N 78 GLN CB HB3 sing N N 79 GLN CG CD sing N N 80 GLN CG HG2 sing N N 81 GLN CG HG3 sing N N 82 GLN CD OE1 doub N N 83 GLN CD NE2 sing N N 84 GLN NE2 HE21 sing N N 85 GLN NE2 HE22 sing N N 86 GLN OXT HXT sing N N 87 GLU N CA sing N N 88 GLU N H sing N N 89 GLU N H2 sing N N 90 GLU CA C sing N N 91 GLU CA CB sing N N 92 GLU CA HA sing N N 93 GLU C O doub N N 94 GLU C OXT sing N N 95 GLU CB CG sing N N 96 GLU CB HB2 sing N N 97 GLU CB HB3 sing N N 98 GLU CG CD sing N N 99 GLU CG HG2 sing N N 100 GLU CG HG3 sing N N 101 GLU CD OE1 doub N N 102 GLU CD OE2 sing N N 103 GLU OE2 HE2 sing N N 104 GLU OXT HXT sing N N 105 GLY N CA sing N N 106 GLY N H sing N N 107 GLY N H2 sing N N 108 GLY CA C sing N N 109 GLY CA HA2 sing N N 110 GLY CA HA3 sing N N 111 GLY C O doub N N 112 GLY C OXT sing N N 113 GLY OXT HXT sing N N 114 HIS N CA sing N N 115 HIS N H sing N N 116 HIS N H2 sing N N 117 HIS CA C sing N N 118 HIS CA CB sing N N 119 HIS CA HA sing N N 120 HIS C O doub N N 121 HIS C OXT sing N N 122 HIS CB CG sing N N 123 HIS CB HB2 sing N N 124 HIS CB HB3 sing N N 125 HIS CG ND1 sing Y N 126 HIS CG CD2 doub Y N 127 HIS ND1 CE1 doub Y N 128 HIS ND1 HD1 sing N N 129 HIS CD2 NE2 sing Y N 130 HIS CD2 HD2 sing N N 131 HIS CE1 NE2 sing Y N 132 HIS CE1 HE1 sing N N 133 HIS NE2 HE2 sing N N 134 HIS OXT HXT sing N N 135 HOH O H1 sing N N 136 HOH O H2 sing N N 137 ILE N CA sing N N 138 ILE N H sing N N 139 ILE N H2 sing N N 140 ILE CA C sing N N 141 ILE CA CB sing N N 142 ILE CA HA sing N N 143 ILE C O doub N N 144 ILE C OXT sing N N 145 ILE CB CG1 sing N N 146 ILE CB CG2 sing N N 147 ILE CB HB sing N N 148 ILE CG1 CD1 sing N N 149 ILE CG1 HG12 sing N N 150 ILE CG1 HG13 sing N N 151 ILE CG2 HG21 sing N N 152 ILE CG2 HG22 sing N N 153 ILE CG2 HG23 sing N N 154 ILE CD1 HD11 sing N N 155 ILE CD1 HD12 sing N N 156 ILE CD1 HD13 sing N N 157 ILE OXT HXT sing N N 158 LEU N CA sing N N 159 LEU N H sing N N 160 LEU N H2 sing N N 161 LEU CA C sing N N 162 LEU CA CB sing N N 163 LEU CA HA sing N N 164 LEU C O doub N N 165 LEU C OXT sing N N 166 LEU CB CG sing N N 167 LEU CB HB2 sing N N 168 LEU CB HB3 sing N N 169 LEU CG CD1 sing N N 170 LEU CG CD2 sing N N 171 LEU CG HG sing N N 172 LEU CD1 HD11 sing N N 173 LEU CD1 HD12 sing N N 174 LEU CD1 HD13 sing N N 175 LEU CD2 HD21 sing N N 176 LEU CD2 HD22 sing N N 177 LEU CD2 HD23 sing N N 178 LEU OXT HXT sing N N 179 LYS N CA sing N N 180 LYS N H sing N N 181 LYS N H2 sing N N 182 LYS CA C sing N N 183 LYS CA CB sing N N 184 LYS CA HA sing N N 185 LYS C O doub N N 186 LYS C OXT sing N N 187 LYS CB CG sing N N 188 LYS CB HB2 sing N N 189 LYS CB HB3 sing N N 190 LYS CG CD sing N N 191 LYS CG HG2 sing N N 192 LYS CG HG3 sing N N 193 LYS CD CE sing N N 194 LYS CD HD2 sing N N 195 LYS CD HD3 sing N N 196 LYS CE NZ sing N N 197 LYS CE HE2 sing N N 198 LYS CE HE3 sing N N 199 LYS NZ HZ1 sing N N 200 LYS NZ HZ2 sing N N 201 LYS NZ HZ3 sing N N 202 LYS OXT HXT sing N N 203 MET N CA sing N N 204 MET N H sing N N 205 MET N H2 sing N N 206 MET CA C sing N N 207 MET CA CB sing N N 208 MET CA HA sing N N 209 MET C O doub N N 210 MET C OXT sing N N 211 MET CB CG sing N N 212 MET CB HB2 sing N N 213 MET CB HB3 sing N N 214 MET CG SD sing N N 215 MET CG HG2 sing N N 216 MET CG HG3 sing N N 217 MET SD CE sing N N 218 MET CE HE1 sing N N 219 MET CE HE2 sing N N 220 MET CE HE3 sing N N 221 MET OXT HXT sing N N 222 PHE N CA sing N N 223 PHE N H sing N N 224 PHE N H2 sing N N 225 PHE CA C sing N N 226 PHE CA CB sing N N 227 PHE CA HA sing N N 228 PHE C O doub N N 229 PHE C OXT sing N N 230 PHE CB CG sing N N 231 PHE CB HB2 sing N N 232 PHE CB HB3 sing N N 233 PHE CG CD1 doub Y N 234 PHE CG CD2 sing Y N 235 PHE CD1 CE1 sing Y N 236 PHE CD1 HD1 sing N N 237 PHE CD2 CE2 doub Y N 238 PHE CD2 HD2 sing N N 239 PHE CE1 CZ doub Y N 240 PHE CE1 HE1 sing N N 241 PHE CE2 CZ sing Y N 242 PHE CE2 HE2 sing N N 243 PHE CZ HZ sing N N 244 PHE OXT HXT sing N N 245 PRO N CA sing N N 246 PRO N CD sing N N 247 PRO N H sing N N 248 PRO CA C sing N N 249 PRO CA CB sing N N 250 PRO CA HA sing N N 251 PRO C O doub N N 252 PRO C OXT sing N N 253 PRO CB CG sing N N 254 PRO CB HB2 sing N N 255 PRO CB HB3 sing N N 256 PRO CG CD sing N N 257 PRO CG HG2 sing N N 258 PRO CG HG3 sing N N 259 PRO CD HD2 sing N N 260 PRO CD HD3 sing N N 261 PRO OXT HXT sing N N 262 SER N CA sing N N 263 SER N H sing N N 264 SER N H2 sing N N 265 SER CA C sing N N 266 SER CA CB sing N N 267 SER CA HA sing N N 268 SER C O doub N N 269 SER C OXT sing N N 270 SER CB OG sing N N 271 SER CB HB2 sing N N 272 SER CB HB3 sing N N 273 SER OG HG sing N N 274 SER OXT HXT sing N N 275 TRP N CA sing N N 276 TRP N H sing N N 277 TRP N H2 sing N N 278 TRP CA C sing N N 279 TRP CA CB sing N N 280 TRP CA HA sing N N 281 TRP C O doub N N 282 TRP C OXT sing N N 283 TRP CB CG sing N N 284 TRP CB HB2 sing N N 285 TRP CB HB3 sing N N 286 TRP CG CD1 doub Y N 287 TRP CG CD2 sing Y N 288 TRP CD1 NE1 sing Y N 289 TRP CD1 HD1 sing N N 290 TRP CD2 CE2 doub Y N 291 TRP CD2 CE3 sing Y N 292 TRP NE1 CE2 sing Y N 293 TRP NE1 HE1 sing N N 294 TRP CE2 CZ2 sing Y N 295 TRP CE3 CZ3 doub Y N 296 TRP CE3 HE3 sing N N 297 TRP CZ2 CH2 doub Y N 298 TRP CZ2 HZ2 sing N N 299 TRP CZ3 CH2 sing Y N 300 TRP CZ3 HZ3 sing N N 301 TRP CH2 HH2 sing N N 302 TRP OXT HXT sing N N 303 TYR N CA sing N N 304 TYR N H sing N N 305 TYR N H2 sing N N 306 TYR CA C sing N N 307 TYR CA CB sing N N 308 TYR CA HA sing N N 309 TYR C O doub N N 310 TYR C OXT sing N N 311 TYR CB CG sing N N 312 TYR CB HB2 sing N N 313 TYR CB HB3 sing N N 314 TYR CG CD1 doub Y N 315 TYR CG CD2 sing Y N 316 TYR CD1 CE1 sing Y N 317 TYR CD1 HD1 sing N N 318 TYR CD2 CE2 doub Y N 319 TYR CD2 HD2 sing N N 320 TYR CE1 CZ doub Y N 321 TYR CE1 HE1 sing N N 322 TYR CE2 CZ sing Y N 323 TYR CE2 HE2 sing N N 324 TYR CZ OH sing N N 325 TYR OH HH sing N N 326 TYR OXT HXT sing N N 327 VAL N CA sing N N 328 VAL N H sing N N 329 VAL N H2 sing N N 330 VAL CA C sing N N 331 VAL CA CB sing N N 332 VAL CA HA sing N N 333 VAL C O doub N N 334 VAL C OXT sing N N 335 VAL CB CG1 sing N N 336 VAL CB CG2 sing N N 337 VAL CB HB sing N N 338 VAL CG1 HG11 sing N N 339 VAL CG1 HG12 sing N N 340 VAL CG1 HG13 sing N N 341 VAL CG2 HG21 sing N N 342 VAL CG2 HG22 sing N N 343 VAL CG2 HG23 sing N N 344 VAL OXT HXT sing N N 345 XYS C1 C2 sing N N 346 XYS C1 O1 sing N N 347 XYS C1 O5 sing N N 348 XYS C1 H1 sing N N 349 XYS C2 C3 sing N N 350 XYS C2 O2 sing N N 351 XYS C2 H2 sing N N 352 XYS C3 C4 sing N N 353 XYS C3 O3 sing N N 354 XYS C3 H3 sing N N 355 XYS C4 C5 sing N N 356 XYS C4 O4 sing N N 357 XYS C4 H4 sing N N 358 XYS C5 O5 sing N N 359 XYS C5 H51 sing N N 360 XYS C5 H52 sing N N 361 XYS O1 HO1 sing N N 362 XYS O2 HO2 sing N N 363 XYS O3 HO3 sing N N 364 XYS O4 HO4 sing N N 365 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero D 2 BGC 1 D BGC 1 D GXX 2 n D 2 XYS 2 D XYS 2 D GXX 2 n D 2 XYS 3 D XYS 3 D GXX 2 n E 2 BGC 1 E BGC 1 D GXX 1 n E 2 XYS 2 E XYS 2 D GXX 1 n E 2 XYS 3 E XYS 3 D GXX 1 n F 2 BGC 1 F BGC 1 D GXX 3 n F 2 XYS 2 F XYS 2 D GXX 3 n F 2 XYS 3 F XYS 3 D GXX 3 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc XYS 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DXylpa XYS 'COMMON NAME' GMML 1.0 a-D-xylopyranose XYS 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Xylp XYS 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Xyl # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DXylpa1-3DXylpa1-3DGlcpb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,3,2/[a2122h-1b_1-5][a212h-1a_1-5]/1-2-2/a3-b1_b3-c1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(3+1)][b-D-Glcp]{[(3+1)][a-D-Xylp]{[(3+1)][a-D-Xylp]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 XYS C1 O1 1 BGC O3 HO3 sing ? 2 2 3 XYS C1 O1 2 XYS O3 HO3 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 BGC 1 n 2 XYS 2 n 2 XYS 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CALCIUM ION' CA 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1EDM _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #