HEADER TRANSFERASE, HYDROLASE 25-MAY-17 5VYG TITLE CRYSTAL STRUCTURE OF HFA9 EGF REPEAT WITH O-GLUCOSE TRISACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR IX; COMPND 3 CHAIN: B, A, C; COMPND 4 SYNONYM: CHRISTMAS FACTOR,PLASMA THROMBOPLASTIN COMPONENT,PTC; COMPND 5 EC: 3.4.21.22; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NOTCH REGULATION, EGF REPEAT, GLYCOSYLATION, TRANSFERASE-HYDROLASE KEYWDS 2 COMPLEX, TRANSFERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.J.YU,H.L.LI REVDAT 4 04-OCT-23 5VYG 1 HETSYN REVDAT 3 29-JUL-20 5VYG 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 FORMUL LINK SITE ATOM REVDAT 2 28-FEB-18 5VYG 1 JRNL REVDAT 1 09-AUG-17 5VYG 0 JRNL AUTH H.TAKEUCHI,H.YU,H.HAO,M.TAKEUCHI,A.ITO,H.LI,R.S.HALTIWANGER JRNL TITL O-GLYCOSYLATION MODULATES THE STABILITY OF EPIDERMAL GROWTH JRNL TITL 2 FACTOR-LIKE REPEATS AND THEREBY REGULATES NOTCH TRAFFICKING JRNL REF J. BIOL. CHEM. V. 292 15964 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28729422 JRNL DOI 10.1074/JBC.M117.800102 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 7814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 377 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 546 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 958 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 37 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.96000 REMARK 3 B33 (A**2) : 0.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.25000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.265 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.412 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1078 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1469 ; 1.490 ; 2.048 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 125 ; 6.362 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;44.180 ;27.736 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 151 ;17.405 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 165 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 784 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5VYG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000228144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7814 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1EDM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 15% GLYCEROL, 1.6 M REMARK 280 (NH4)2SO4, 5% 2,2,2-TRIFLUOROETHANOL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.20850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.42000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.20850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.42000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 86 REMARK 465 HIS B 87 REMARK 465 HIS B 88 REMARK 465 HIS B 89 REMARK 465 HIS B 90 REMARK 465 HIS B 91 REMARK 465 HIS B 92 REMARK 465 GLU A 86 REMARK 465 HIS A 87 REMARK 465 HIS A 88 REMARK 465 HIS A 89 REMARK 465 HIS A 90 REMARK 465 HIS A 91 REMARK 465 HIS A 92 REMARK 465 MET C 43 REMARK 465 GLU C 86 REMARK 465 HIS C 87 REMARK 465 HIS C 88 REMARK 465 HIS C 89 REMARK 465 HIS C 90 REMARK 465 HIS C 91 REMARK 465 HIS C 92 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 85 CG CD1 CD2 REMARK 470 MET A 43 CG SD CE REMARK 470 ASP A 44 CG OD1 OD2 REMARK 470 ILE A 45 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 53 O5 BGC E 1 1.75 REMARK 500 OG SER B 53 O5 BGC D 1 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 68 170.95 179.64 REMARK 500 PHE C 75 123.93 -36.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 47 OD2 REMARK 620 2 GLY B 48 O 94.1 REMARK 620 3 GLN B 50 OE1 77.8 88.2 REMARK 620 4 ASP B 64 OD1 150.0 92.4 73.2 REMARK 620 5 ASP B 64 OD2 155.7 91.4 126.0 52.9 REMARK 620 6 ASP B 65 O 87.0 173.0 85.3 83.3 90.4 REMARK 620 7 ASN C 58 OD1 75.8 98.9 153.0 131.9 80.0 88.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 58 OD1 REMARK 620 2 ASP A 47 OD1 71.7 REMARK 620 3 GLY A 48 O 97.0 91.6 REMARK 620 4 GLN A 50 OE1 158.1 86.4 84.6 REMARK 620 5 ASP A 64 OD1 128.5 158.9 91.7 73.1 REMARK 620 6 ASP A 64 OD2 76.3 147.9 95.2 125.4 52.3 REMARK 620 7 ASP A 65 O 94.6 87.5 167.4 82.8 84.8 92.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 58 OD1 REMARK 620 2 ASP C 47 OD2 23.9 REMARK 620 3 GLY C 48 O 22.8 5.4 REMARK 620 4 GLN C 50 OE1 26.9 4.0 5.1 REMARK 620 5 ASP C 64 OD1 28.0 7.8 5.2 4.3 REMARK 620 6 ASP C 64 OD2 26.9 7.9 4.3 5.0 1.5 REMARK 620 7 ASP C 65 O 28.4 5.5 6.2 1.6 3.8 4.9 REMARK 620 N 1 2 3 4 5 6 DBREF 5VYG B 46 84 UNP P00740 FA9_HUMAN 92 130 DBREF 5VYG A 46 84 UNP P00740 FA9_HUMAN 92 130 DBREF 5VYG C 46 84 UNP P00740 FA9_HUMAN 92 130 SEQADV 5VYG MET B 43 UNP P00740 INITIATING METHIONINE SEQADV 5VYG ASP B 44 UNP P00740 EXPRESSION TAG SEQADV 5VYG ILE B 45 UNP P00740 EXPRESSION TAG SEQADV 5VYG LEU B 85 UNP P00740 EXPRESSION TAG SEQADV 5VYG GLU B 86 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS B 87 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS B 88 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS B 89 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS B 90 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS B 91 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS B 92 UNP P00740 EXPRESSION TAG SEQADV 5VYG MET A 43 UNP P00740 INITIATING METHIONINE SEQADV 5VYG ASP A 44 UNP P00740 EXPRESSION TAG SEQADV 5VYG ILE A 45 UNP P00740 EXPRESSION TAG SEQADV 5VYG LEU A 85 UNP P00740 EXPRESSION TAG SEQADV 5VYG GLU A 86 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS A 87 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS A 88 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS A 89 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS A 90 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS A 91 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS A 92 UNP P00740 EXPRESSION TAG SEQADV 5VYG MET C 43 UNP P00740 INITIATING METHIONINE SEQADV 5VYG ASP C 44 UNP P00740 EXPRESSION TAG SEQADV 5VYG ILE C 45 UNP P00740 EXPRESSION TAG SEQADV 5VYG LEU C 85 UNP P00740 EXPRESSION TAG SEQADV 5VYG GLU C 86 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS C 87 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS C 88 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS C 89 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS C 90 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS C 91 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS C 92 UNP P00740 EXPRESSION TAG SEQRES 1 B 50 MET ASP ILE VAL ASP GLY ASP GLN CYS GLU SER ASN PRO SEQRES 2 B 50 CYS LEU ASN GLY GLY SER CYS LYS ASP ASP ILE ASN SER SEQRES 3 B 50 TYR GLU CYS TRP CYS PRO PHE GLY PHE GLU GLY LYS ASN SEQRES 4 B 50 CYS GLU LEU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 A 50 MET ASP ILE VAL ASP GLY ASP GLN CYS GLU SER ASN PRO SEQRES 2 A 50 CYS LEU ASN GLY GLY SER CYS LYS ASP ASP ILE ASN SER SEQRES 3 A 50 TYR GLU CYS TRP CYS PRO PHE GLY PHE GLU GLY LYS ASN SEQRES 4 A 50 CYS GLU LEU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 50 MET ASP ILE VAL ASP GLY ASP GLN CYS GLU SER ASN PRO SEQRES 2 C 50 CYS LEU ASN GLY GLY SER CYS LYS ASP ASP ILE ASN SER SEQRES 3 C 50 TYR GLU CYS TRP CYS PRO PHE GLY PHE GLU GLY LYS ASN SEQRES 4 C 50 CYS GLU LEU LEU GLU HIS HIS HIS HIS HIS HIS HET BGC D 1 11 HET XYS D 2 9 HET XYS D 3 9 HET BGC E 1 11 HET XYS E 2 9 HET XYS E 3 9 HET BGC F 1 11 HET XYS F 2 9 HET XYS F 3 9 HET CA B 102 1 HET CA B 103 1 HET CA C 102 1 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM XYS ALPHA-D-XYLOPYRANOSE HETNAM CA CALCIUM ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE FORMUL 4 BGC 3(C6 H12 O6) FORMUL 4 XYS 6(C5 H10 O5) FORMUL 7 CA 3(CA 2+) FORMUL 10 HOH *37(H2 O) SHEET 1 AA1 2 SER B 61 ASP B 64 0 SHEET 2 AA1 2 TYR B 69 TRP B 72 -1 O TRP B 72 N SER B 61 SHEET 1 AA2 2 SER A 61 ASP A 65 0 SHEET 2 AA2 2 SER A 68 TRP A 72 -1 O TRP A 72 N SER A 61 SHEET 1 AA3 2 SER C 61 ASP C 65 0 SHEET 2 AA3 2 SER C 68 TRP C 72 -1 O TRP C 72 N SER C 61 SSBOND 1 CYS B 51 CYS B 62 1555 1555 2.06 SSBOND 2 CYS B 56 CYS B 71 1555 1555 2.03 SSBOND 3 CYS B 73 CYS B 82 1555 1555 2.07 SSBOND 4 CYS A 51 CYS A 62 1555 1555 2.07 SSBOND 5 CYS A 56 CYS A 71 1555 1555 2.04 SSBOND 6 CYS A 73 CYS A 82 1555 1555 2.08 SSBOND 7 CYS C 51 CYS C 62 1555 1555 2.07 SSBOND 8 CYS C 56 CYS C 71 1555 1555 2.03 SSBOND 9 CYS C 73 CYS C 82 1555 1555 2.09 LINK OG SER B 53 C1 BGC D 1 1555 1555 1.21 LINK OG SER A 53 C1 BGC E 1 1555 1555 1.42 LINK OG SER C 53 C1 BGC F 1 1555 1555 1.30 LINK O3 BGC D 1 C1 XYS D 2 1555 1555 1.43 LINK O3 XYS D 2 C1 XYS D 3 1555 1555 1.43 LINK O3 BGC E 1 C1 XYS E 2 1555 1555 1.42 LINK O3 XYS E 2 C1 XYS E 3 1555 1555 1.41 LINK O3 BGC F 1 C1 XYS F 2 1555 1555 1.43 LINK O3 XYS F 2 C1 XYS F 3 1555 1555 1.43 LINK OD2 ASP B 47 CA CA B 102 1555 1555 2.59 LINK O GLY B 48 CA CA B 102 1555 1555 2.36 LINK OE1 GLN B 50 CA CA B 102 1555 1555 2.44 LINK OD1 ASN B 58 CA CA B 103 1555 1555 2.29 LINK OD1 ASP B 64 CA CA B 102 1555 1555 2.50 LINK OD2 ASP B 64 CA CA B 102 1555 1555 2.45 LINK O ASP B 65 CA CA B 102 1555 1555 2.30 LINK CA CA B 102 OD1 ASN C 58 1555 1555 2.26 LINK CA CA B 103 OD1 ASP A 47 1555 1555 2.68 LINK CA CA B 103 O GLY A 48 1555 1555 2.39 LINK CA CA B 103 OE1 GLN A 50 1555 1555 2.34 LINK CA CA B 103 OD1 ASP A 64 1555 1555 2.49 LINK CA CA B 103 OD2 ASP A 64 1555 1555 2.50 LINK CA CA B 103 O ASP A 65 1555 1555 2.42 LINK OD1 ASN A 58 CA CA C 102 1555 1556 2.40 LINK OD2 ASP C 47 CA CA C 102 1555 1555 2.91 LINK O GLY C 48 CA CA C 102 1555 1555 2.40 LINK OE1 GLN C 50 CA CA C 102 1555 1555 2.37 LINK OD1 ASP C 64 CA CA C 102 1555 1555 2.49 LINK OD2 ASP C 64 CA CA C 102 1555 1555 2.61 LINK O ASP C 65 CA CA C 102 1555 1555 2.34 CRYST1 92.417 46.840 37.259 90.00 92.58 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010820 0.000000 0.000487 0.00000 SCALE2 0.000000 0.021349 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026867 0.00000