HEADER TRANSFERASE, HYDROLASE 25-MAY-17 5VYG TITLE CRYSTAL STRUCTURE OF HFA9 EGF REPEAT WITH O-GLUCOSE TRISACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR IX; COMPND 3 CHAIN: B, A, C; COMPND 4 SYNONYM: CHRISTMAS FACTOR,PLASMA THROMBOPLASTIN COMPONENT,PTC; COMPND 5 EC: 3.4.21.22; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NOTCH REGULATION, EGF REPEAT, GLYCOSYLATION, TRANSFERASE-HYDROLASE KEYWDS 2 COMPLEX, TRANSFERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.J.YU,H.L.LI REVDAT 5 23-OCT-24 5VYG 1 REMARK REVDAT 4 04-OCT-23 5VYG 1 HETSYN REVDAT 3 29-JUL-20 5VYG 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 FORMUL LINK SITE ATOM REVDAT 2 28-FEB-18 5VYG 1 JRNL REVDAT 1 09-AUG-17 5VYG 0 JRNL AUTH H.TAKEUCHI,H.YU,H.HAO,M.TAKEUCHI,A.ITO,H.LI,R.S.HALTIWANGER JRNL TITL O-GLYCOSYLATION MODULATES THE STABILITY OF EPIDERMAL GROWTH JRNL TITL 2 FACTOR-LIKE REPEATS AND THEREBY REGULATES NOTCH TRAFFICKING JRNL REF J. BIOL. CHEM. V. 292 15964 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28729422 JRNL DOI 10.1074/JBC.M117.800102 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 7814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 377 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 546 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 958 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 37 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.96000 REMARK 3 B33 (A**2) : 0.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.25000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.265 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.412 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1078 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1469 ; 1.490 ; 2.048 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 125 ; 6.362 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;44.180 ;27.736 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 151 ;17.405 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 165 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 784 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 5VYG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000228144. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7814 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1EDM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 15% GLYCEROL, 1.6 M REMARK 280 (NH4)2SO4, 5% 2,2,2-TRIFLUOROETHANOL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.20850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.42000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.20850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.42000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 86 REMARK 465 HIS B 87 REMARK 465 HIS B 88 REMARK 465 HIS B 89 REMARK 465 HIS B 90 REMARK 465 HIS B 91 REMARK 465 HIS B 92 REMARK 465 GLU A 86 REMARK 465 HIS A 87 REMARK 465 HIS A 88 REMARK 465 HIS A 89 REMARK 465 HIS A 90 REMARK 465 HIS A 91 REMARK 465 HIS A 92 REMARK 465 MET C 43 REMARK 465 GLU C 86 REMARK 465 HIS C 87 REMARK 465 HIS C 88 REMARK 465 HIS C 89 REMARK 465 HIS C 90 REMARK 465 HIS C 91 REMARK 465 HIS C 92 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 85 CG CD1 CD2 REMARK 470 MET A 43 CG SD CE REMARK 470 ASP A 44 CG OD1 OD2 REMARK 470 ILE A 45 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 53 O5 BGC E 1 1.75 REMARK 500 OG SER B 53 O5 BGC D 1 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 68 170.95 179.64 REMARK 500 PHE C 75 123.93 -36.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 47 OD2 REMARK 620 2 GLY B 48 O 94.1 REMARK 620 3 GLN B 50 OE1 77.8 88.2 REMARK 620 4 ASP B 64 OD1 150.0 92.4 73.2 REMARK 620 5 ASP B 64 OD2 155.7 91.4 126.0 52.9 REMARK 620 6 ASP B 65 O 87.0 173.0 85.3 83.3 90.4 REMARK 620 7 ASN C 58 OD1 75.8 98.9 153.0 131.9 80.0 88.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 58 OD1 REMARK 620 2 ASP A 47 OD1 71.7 REMARK 620 3 GLY A 48 O 97.0 91.6 REMARK 620 4 GLN A 50 OE1 158.1 86.4 84.6 REMARK 620 5 ASP A 64 OD1 128.5 158.9 91.7 73.1 REMARK 620 6 ASP A 64 OD2 76.3 147.9 95.2 125.4 52.3 REMARK 620 7 ASP A 65 O 94.6 87.5 167.4 82.8 84.8 92.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 58 OD1 REMARK 620 2 ASP C 47 OD2 23.9 REMARK 620 3 GLY C 48 O 22.8 5.4 REMARK 620 4 GLN C 50 OE1 26.9 4.0 5.1 REMARK 620 5 ASP C 64 OD1 28.0 7.8 5.2 4.3 REMARK 620 6 ASP C 64 OD2 26.9 7.9 4.3 5.0 1.5 REMARK 620 7 ASP C 65 O 28.4 5.5 6.2 1.6 3.8 4.9 REMARK 620 N 1 2 3 4 5 6 DBREF 5VYG B 46 84 UNP P00740 FA9_HUMAN 92 130 DBREF 5VYG A 46 84 UNP P00740 FA9_HUMAN 92 130 DBREF 5VYG C 46 84 UNP P00740 FA9_HUMAN 92 130 SEQADV 5VYG MET B 43 UNP P00740 INITIATING METHIONINE SEQADV 5VYG ASP B 44 UNP P00740 EXPRESSION TAG SEQADV 5VYG ILE B 45 UNP P00740 EXPRESSION TAG SEQADV 5VYG LEU B 85 UNP P00740 EXPRESSION TAG SEQADV 5VYG GLU B 86 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS B 87 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS B 88 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS B 89 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS B 90 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS B 91 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS B 92 UNP P00740 EXPRESSION TAG SEQADV 5VYG MET A 43 UNP P00740 INITIATING METHIONINE SEQADV 5VYG ASP A 44 UNP P00740 EXPRESSION TAG SEQADV 5VYG ILE A 45 UNP P00740 EXPRESSION TAG SEQADV 5VYG LEU A 85 UNP P00740 EXPRESSION TAG SEQADV 5VYG GLU A 86 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS A 87 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS A 88 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS A 89 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS A 90 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS A 91 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS A 92 UNP P00740 EXPRESSION TAG SEQADV 5VYG MET C 43 UNP P00740 INITIATING METHIONINE SEQADV 5VYG ASP C 44 UNP P00740 EXPRESSION TAG SEQADV 5VYG ILE C 45 UNP P00740 EXPRESSION TAG SEQADV 5VYG LEU C 85 UNP P00740 EXPRESSION TAG SEQADV 5VYG GLU C 86 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS C 87 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS C 88 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS C 89 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS C 90 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS C 91 UNP P00740 EXPRESSION TAG SEQADV 5VYG HIS C 92 UNP P00740 EXPRESSION TAG SEQRES 1 B 50 MET ASP ILE VAL ASP GLY ASP GLN CYS GLU SER ASN PRO SEQRES 2 B 50 CYS LEU ASN GLY GLY SER CYS LYS ASP ASP ILE ASN SER SEQRES 3 B 50 TYR GLU CYS TRP CYS PRO PHE GLY PHE GLU GLY LYS ASN SEQRES 4 B 50 CYS GLU LEU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 A 50 MET ASP ILE VAL ASP GLY ASP GLN CYS GLU SER ASN PRO SEQRES 2 A 50 CYS LEU ASN GLY GLY SER CYS LYS ASP ASP ILE ASN SER SEQRES 3 A 50 TYR GLU CYS TRP CYS PRO PHE GLY PHE GLU GLY LYS ASN SEQRES 4 A 50 CYS GLU LEU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 50 MET ASP ILE VAL ASP GLY ASP GLN CYS GLU SER ASN PRO SEQRES 2 C 50 CYS LEU ASN GLY GLY SER CYS LYS ASP ASP ILE ASN SER SEQRES 3 C 50 TYR GLU CYS TRP CYS PRO PHE GLY PHE GLU GLY LYS ASN SEQRES 4 C 50 CYS GLU LEU LEU GLU HIS HIS HIS HIS HIS HIS HET BGC D 1 11 HET XYS D 2 9 HET XYS D 3 9 HET BGC E 1 11 HET XYS E 2 9 HET XYS E 3 9 HET BGC F 1 11 HET XYS F 2 9 HET XYS F 3 9 HET CA B 102 1 HET CA B 103 1 HET CA C 102 1 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM XYS ALPHA-D-XYLOPYRANOSE HETNAM CA CALCIUM ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE FORMUL 4 BGC 3(C6 H12 O6) FORMUL 4 XYS 6(C5 H10 O5) FORMUL 7 CA 3(CA 2+) FORMUL 10 HOH *37(H2 O) SHEET 1 AA1 2 SER B 61 ASP B 64 0 SHEET 2 AA1 2 TYR B 69 TRP B 72 -1 O TRP B 72 N SER B 61 SHEET 1 AA2 2 SER A 61 ASP A 65 0 SHEET 2 AA2 2 SER A 68 TRP A 72 -1 O TRP A 72 N SER A 61 SHEET 1 AA3 2 SER C 61 ASP C 65 0 SHEET 2 AA3 2 SER C 68 TRP C 72 -1 O TRP C 72 N SER C 61 SSBOND 1 CYS B 51 CYS B 62 1555 1555 2.06 SSBOND 2 CYS B 56 CYS B 71 1555 1555 2.03 SSBOND 3 CYS B 73 CYS B 82 1555 1555 2.07 SSBOND 4 CYS A 51 CYS A 62 1555 1555 2.07 SSBOND 5 CYS A 56 CYS A 71 1555 1555 2.04 SSBOND 6 CYS A 73 CYS A 82 1555 1555 2.08 SSBOND 7 CYS C 51 CYS C 62 1555 1555 2.07 SSBOND 8 CYS C 56 CYS C 71 1555 1555 2.03 SSBOND 9 CYS C 73 CYS C 82 1555 1555 2.09 LINK OG SER B 53 C1 BGC D 1 1555 1555 1.21 LINK OG SER A 53 C1 BGC E 1 1555 1555 1.42 LINK OG SER C 53 C1 BGC F 1 1555 1555 1.30 LINK O3 BGC D 1 C1 XYS D 2 1555 1555 1.43 LINK O3 XYS D 2 C1 XYS D 3 1555 1555 1.43 LINK O3 BGC E 1 C1 XYS E 2 1555 1555 1.42 LINK O3 XYS E 2 C1 XYS E 3 1555 1555 1.41 LINK O3 BGC F 1 C1 XYS F 2 1555 1555 1.43 LINK O3 XYS F 2 C1 XYS F 3 1555 1555 1.43 LINK OD2 ASP B 47 CA CA B 102 1555 1555 2.59 LINK O GLY B 48 CA CA B 102 1555 1555 2.36 LINK OE1 GLN B 50 CA CA B 102 1555 1555 2.44 LINK OD1 ASN B 58 CA CA B 103 1555 1555 2.29 LINK OD1 ASP B 64 CA CA B 102 1555 1555 2.50 LINK OD2 ASP B 64 CA CA B 102 1555 1555 2.45 LINK O ASP B 65 CA CA B 102 1555 1555 2.30 LINK CA CA B 102 OD1 ASN C 58 1555 1555 2.26 LINK CA CA B 103 OD1 ASP A 47 1555 1555 2.68 LINK CA CA B 103 O GLY A 48 1555 1555 2.39 LINK CA CA B 103 OE1 GLN A 50 1555 1555 2.34 LINK CA CA B 103 OD1 ASP A 64 1555 1555 2.49 LINK CA CA B 103 OD2 ASP A 64 1555 1555 2.50 LINK CA CA B 103 O ASP A 65 1555 1555 2.42 LINK OD1 ASN A 58 CA CA C 102 1555 1556 2.40 LINK OD2 ASP C 47 CA CA C 102 1555 1555 2.91 LINK O GLY C 48 CA CA C 102 1555 1555 2.40 LINK OE1 GLN C 50 CA CA C 102 1555 1555 2.37 LINK OD1 ASP C 64 CA CA C 102 1555 1555 2.49 LINK OD2 ASP C 64 CA CA C 102 1555 1555 2.61 LINK O ASP C 65 CA CA C 102 1555 1555 2.34 CRYST1 92.417 46.840 37.259 90.00 92.58 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010820 0.000000 0.000487 0.00000 SCALE2 0.000000 0.021349 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026867 0.00000 CONECT 39 1049 CONECT 43 1049 CONECT 59 1049 CONECT 66 138 CONECT 81 967 CONECT 102 212 CONECT 117 1050 CONECT 138 66 CONECT 154 1049 CONECT 155 1049 CONECT 159 1049 CONECT 212 102 CONECT 232 301 CONECT 301 232 CONECT 353 1050 CONECT 358 1050 CONECT 374 1050 CONECT 381 453 CONECT 396 996 CONECT 417 527 CONECT 453 381 CONECT 469 1050 CONECT 470 1050 CONECT 474 1050 CONECT 527 417 CONECT 547 616 CONECT 616 547 CONECT 673 1051 CONECT 677 1051 CONECT 693 1051 CONECT 700 772 CONECT 715 1025 CONECT 736 846 CONECT 751 1049 CONECT 772 700 CONECT 788 1051 CONECT 789 1051 CONECT 793 1051 CONECT 846 736 CONECT 866 935 CONECT 935 866 CONECT 962 963 967 968 CONECT 963 962 964 969 CONECT 964 963 965 970 CONECT 965 964 966 971 CONECT 966 965 972 CONECT 967 81 962 971 CONECT 968 962 CONECT 969 963 973 CONECT 970 964 CONECT 971 965 967 CONECT 972 966 CONECT 973 969 974 981 CONECT 974 973 975 978 CONECT 975 974 976 979 CONECT 976 975 977 980 CONECT 977 976 981 CONECT 978 974 CONECT 979 975 982 CONECT 980 976 CONECT 981 973 977 CONECT 982 979 983 990 CONECT 983 982 984 987 CONECT 984 983 985 988 CONECT 985 984 986 989 CONECT 986 985 990 CONECT 987 983 CONECT 988 984 CONECT 989 985 CONECT 990 982 986 CONECT 991 992 996 997 CONECT 992 991 993 998 CONECT 993 992 994 999 CONECT 994 993 995 1000 CONECT 995 994 1001 CONECT 996 396 991 1000 CONECT 997 991 CONECT 998 992 1002 CONECT 999 993 CONECT 1000 994 996 CONECT 1001 995 CONECT 1002 998 1003 1010 CONECT 1003 1002 1004 1007 CONECT 1004 1003 1005 1008 CONECT 1005 1004 1006 1009 CONECT 1006 1005 1010 CONECT 1007 1003 CONECT 1008 1004 1011 CONECT 1009 1005 CONECT 1010 1002 1006 CONECT 1011 1008 1012 1019 CONECT 1012 1011 1013 1016 CONECT 1013 1012 1014 1017 CONECT 1014 1013 1015 1018 CONECT 1015 1014 1019 CONECT 1016 1012 CONECT 1017 1013 CONECT 1018 1014 CONECT 1019 1011 1015 CONECT 1020 1021 1025 1026 CONECT 1021 1020 1022 1027 CONECT 1022 1021 1023 1028 CONECT 1023 1022 1024 1029 CONECT 1024 1023 1030 CONECT 1025 715 1020 1029 CONECT 1026 1020 CONECT 1027 1021 1031 CONECT 1028 1022 CONECT 1029 1023 1025 CONECT 1030 1024 CONECT 1031 1027 1032 1039 CONECT 1032 1031 1033 1036 CONECT 1033 1032 1034 1037 CONECT 1034 1033 1035 1038 CONECT 1035 1034 1039 CONECT 1036 1032 CONECT 1037 1033 1040 CONECT 1038 1034 CONECT 1039 1031 1035 CONECT 1040 1037 1041 1048 CONECT 1041 1040 1042 1045 CONECT 1042 1041 1043 1046 CONECT 1043 1042 1044 1047 CONECT 1044 1043 1048 CONECT 1045 1041 CONECT 1046 1042 CONECT 1047 1043 CONECT 1048 1040 1044 CONECT 1049 39 43 59 154 CONECT 1049 155 159 751 CONECT 1050 117 353 358 374 CONECT 1050 469 470 474 CONECT 1051 673 677 693 788 CONECT 1051 789 793 MASTER 364 0 12 0 6 0 0 6 1085 3 134 12 END