HEADER HYDROLASE 25-MAY-17 5VYM TITLE CRYSTAL STRUCTURE OF BETA-GALACTOSIDASE FROM BIFIDOBACTERIUM TITLE 2 ADOLESCENTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GALACTOSIDASE BGAB; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BETA-GAL,BETA-GAL II; COMPND 5 EC: 3.2.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BIFIDOBACTERIUM ADOLESCENTIS (STRAIN ATCC 15703 SOURCE 3 / DSM 20083 / NCTC 11814 / E194A); SOURCE 4 ORGANISM_TAXID: 367928; SOURCE 5 STRAIN: ATCC 15703 / DSM 20083 / NCTC 11814 / E194A; SOURCE 6 GENE: BGAB, BGALII, BAD_1401; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS STRUCTURAL GENOMICS, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 2 PSI-BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,M.CUFF,C.TESAR,M.ENDRES,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 04-OCT-23 5VYM 1 REMARK REVDAT 2 01-JAN-20 5VYM 1 REMARK REVDAT 1 02-AUG-17 5VYM 0 JRNL AUTH C.CHANG,M.CUFF,C.TESAR,M.ENDRES,A.JOACHIMIAK, JRNL AUTH 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) JRNL TITL CRYSTAL STRUCTURE OF BETA-GALACTOSIDASE FROM BIFIDOBACTERIUM JRNL TITL 2 ADOLESCENTIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2650 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 78.3 REMARK 3 NUMBER OF REFLECTIONS : 36438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.230 REMARK 3 FREE R VALUE TEST SET COUNT : 3000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.1134 - 6.7621 0.98 2005 177 0.1776 0.1866 REMARK 3 2 6.7621 - 5.3730 0.96 1944 172 0.1695 0.2259 REMARK 3 3 5.3730 - 4.6954 0.96 1951 174 0.1417 0.1689 REMARK 3 4 4.6954 - 4.2669 0.96 1952 177 0.1327 0.1794 REMARK 3 5 4.2669 - 3.9615 0.96 1955 178 0.1334 0.1523 REMARK 3 6 3.9615 - 3.7281 0.97 1971 180 0.1529 0.2229 REMARK 3 7 3.7281 - 3.5416 0.97 1989 169 0.1702 0.2081 REMARK 3 8 3.5416 - 3.3876 0.96 1944 168 0.1895 0.2259 REMARK 3 9 3.3876 - 3.2572 0.92 1873 172 0.1944 0.2450 REMARK 3 10 3.2572 - 3.1449 0.88 1778 160 0.1980 0.2781 REMARK 3 11 3.1449 - 3.0466 0.80 1633 144 0.2234 0.2986 REMARK 3 12 3.0466 - 2.9596 0.73 1484 135 0.2534 0.3107 REMARK 3 13 2.9596 - 2.8817 0.70 1443 125 0.2409 0.2854 REMARK 3 14 2.8817 - 2.8114 0.69 1364 141 0.2559 0.3005 REMARK 3 15 2.8114 - 2.7475 0.67 1339 122 0.2740 0.3548 REMARK 3 16 2.7475 - 2.6891 0.64 1333 119 0.2521 0.2938 REMARK 3 17 2.6891 - 2.6353 0.63 1280 117 0.2617 0.3270 REMARK 3 18 2.6353 - 2.5856 0.61 1220 112 0.2553 0.3338 REMARK 3 19 2.5856 - 2.5394 0.56 1159 99 0.2707 0.3584 REMARK 3 20 2.5394 - 2.4964 0.49 976 84 0.2749 0.3454 REMARK 3 21 2.4964 - 2.4561 0.41 845 75 0.2620 0.3581 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3347 REMARK 3 ANGLE : 0.420 4567 REMARK 3 CHIRALITY : 0.039 512 REMARK 3 PLANARITY : 0.003 591 REMARK 3 DIHEDRAL : 10.683 1904 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6290 24.3873 -25.2606 REMARK 3 T TENSOR REMARK 3 T11: 0.2653 T22: 0.2203 REMARK 3 T33: 0.2264 T12: -0.0295 REMARK 3 T13: 0.0150 T23: -0.0507 REMARK 3 L TENSOR REMARK 3 L11: 0.3818 L22: 0.2594 REMARK 3 L33: 0.4196 L12: 0.0482 REMARK 3 L13: -0.3769 L23: 0.0837 REMARK 3 S TENSOR REMARK 3 S11: -0.0668 S12: 0.0810 S13: 0.0010 REMARK 3 S21: -0.0869 S22: 0.0662 S23: -0.1689 REMARK 3 S31: 0.1850 S32: 0.0588 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4622 28.9492 -10.2628 REMARK 3 T TENSOR REMARK 3 T11: 0.1214 T22: 0.0962 REMARK 3 T33: 0.0736 T12: -0.0118 REMARK 3 T13: 0.0016 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.4713 L22: 0.4236 REMARK 3 L33: 0.2043 L12: -0.1608 REMARK 3 L13: -0.2938 L23: 0.2055 REMARK 3 S TENSOR REMARK 3 S11: -0.1185 S12: -0.1054 S13: -0.0891 REMARK 3 S21: 0.1332 S22: 0.1472 S23: 0.0085 REMARK 3 S31: 0.1457 S32: -0.0022 S33: 0.0048 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6758 54.4528 4.2774 REMARK 3 T TENSOR REMARK 3 T11: 0.3361 T22: 0.4640 REMARK 3 T33: 0.4709 T12: -0.1371 REMARK 3 T13: 0.0809 T23: -0.1613 REMARK 3 L TENSOR REMARK 3 L11: 0.3615 L22: 0.2359 REMARK 3 L33: 0.2325 L12: 0.0713 REMARK 3 L13: 0.1320 L23: -0.1885 REMARK 3 S TENSOR REMARK 3 S11: 0.0699 S12: -0.1399 S13: 0.3649 REMARK 3 S21: -0.0323 S22: 0.0926 S23: -0.3128 REMARK 3 S31: -0.3271 S32: 0.4967 S33: 0.0007 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8982 52.9421 -0.0751 REMARK 3 T TENSOR REMARK 3 T11: 0.3261 T22: 0.2873 REMARK 3 T33: 0.3298 T12: -0.0686 REMARK 3 T13: 0.0862 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 0.3991 L22: 0.2416 REMARK 3 L33: 0.2680 L12: 0.1643 REMARK 3 L13: -0.0718 L23: -0.0683 REMARK 3 S TENSOR REMARK 3 S11: 0.1268 S12: -0.0215 S13: 0.1646 REMARK 3 S21: 0.0681 S22: 0.0796 S23: -0.0254 REMARK 3 S31: -0.0289 S32: 0.3729 S33: 0.0106 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5607 41.8392 4.2851 REMARK 3 T TENSOR REMARK 3 T11: 0.1205 T22: 0.1616 REMARK 3 T33: 0.1334 T12: 0.0112 REMARK 3 T13: 0.0249 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.8310 L22: 0.6793 REMARK 3 L33: 0.9583 L12: 0.2592 REMARK 3 L13: -0.6480 L23: -0.0882 REMARK 3 S TENSOR REMARK 3 S11: 0.0034 S12: -0.0767 S13: 0.0267 REMARK 3 S21: 0.1533 S22: 0.0398 S23: 0.0865 REMARK 3 S31: -0.0486 S32: 0.0899 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 130 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0860 15.5321 -17.9221 REMARK 3 T TENSOR REMARK 3 T11: 0.3229 T22: 0.2321 REMARK 3 T33: 0.3292 T12: -0.1745 REMARK 3 T13: 0.0921 T23: -0.0467 REMARK 3 L TENSOR REMARK 3 L11: 0.5683 L22: 0.2933 REMARK 3 L33: 0.3708 L12: -0.3685 REMARK 3 L13: -0.0466 L23: 0.0757 REMARK 3 S TENSOR REMARK 3 S11: -0.1696 S12: 0.1494 S13: -0.2378 REMARK 3 S21: 0.1516 S22: -0.0125 S23: 0.3764 REMARK 3 S31: 0.2174 S32: -0.4262 S33: -0.0887 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000228152. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.37762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36438 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 36.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : 0.78600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 4UZS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUMSULFATE, 0.1M SODIUM REMARK 280 ACETATE, 30% PEG8000, PH 4.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.66667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 185.33333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 139.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 231.66667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.33333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.66667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 185.33333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 231.66667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 139.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 46.33333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 GLN A 19 REMARK 465 THR A 20 REMARK 465 LEU A 21 REMARK 465 PRO A 22 REMARK 465 SER A 23 REMARK 465 ALA A 131 REMARK 465 GLU A 132 REMARK 465 ALA A 133 REMARK 465 GLU A 134 REMARK 465 GLY A 135 REMARK 465 GLU A 136 REMARK 465 SER A 226 REMARK 465 GLN A 227 REMARK 465 GLU A 228 REMARK 465 ASN A 229 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 131 REMARK 465 GLU B 132 REMARK 465 ALA B 133 REMARK 465 GLU B 134 REMARK 465 GLY B 135 REMARK 465 GLU B 136 REMARK 465 SER B 225 REMARK 465 SER B 226 REMARK 465 GLN B 227 REMARK 465 GLU B 228 REMARK 465 ASN B 229 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 18 OG REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 LEU A 129 CG CD1 CD2 REMARK 470 PRO A 137 CG CD REMARK 470 ASP A 147 CG OD1 OD2 REMARK 470 GLU A 179 CG CD OE1 OE2 REMARK 470 ASP A 182 CG OD1 OD2 REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 TRP A 184 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 184 CZ3 CH2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 LEU A 186 CG CD1 CD2 REMARK 470 SER A 225 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 44 72.85 -112.41 REMARK 500 ASP A 147 41.23 -97.64 REMARK 500 HIS B 1 -169.66 -104.95 REMARK 500 ASP B 146 -159.66 -91.59 REMARK 500 REMARK 500 REMARK: NULL DBREF 5VYM A 0 229 UNP A1A399 BGAL_BIFAA 409 638 DBREF 5VYM B 0 229 UNP A1A399 BGAL_BIFAA 409 638 SEQADV 5VYM SER A -2 UNP A1A399 EXPRESSION TAG SEQADV 5VYM ASN A -1 UNP A1A399 EXPRESSION TAG SEQADV 5VYM SER B -2 UNP A1A399 EXPRESSION TAG SEQADV 5VYM ASN B -1 UNP A1A399 EXPRESSION TAG SEQRES 1 A 232 SER ASN ALA HIS SER ASP THR ALA ILE LEU PHE SER ALA SEQRES 2 A 232 GLU SER GLU TRP ALA THR ARG SER GLN THR LEU PRO SER SEQRES 3 A 232 MET LYS LEU ASN HIS TRP HIS ASP VAL ARG ASP TRP TYR SEQRES 4 A 232 ARG ALA PHE LEU ASP ALA GLY SER ARG ALA ASP ILE VAL SEQRES 5 A 232 PRO LEU ALA TYR ASP TRP SER SER TYR LYS THR VAL VAL SEQRES 6 A 232 LEU PRO THR VAL LEU ILE LEU SER ALA ALA ASP THR GLN SEQRES 7 A 232 ARG LEU ALA ASP PHE ALA ALA ALA GLY GLY ARG VAL VAL SEQRES 8 A 232 VAL GLY TYR ALA THR GLY LEU ILE ASP GLU HIS PHE HIS SEQRES 9 A 232 THR TRP LEU GLY GLY TYR PRO GLY ALA GLY ASP GLY LEU SEQRES 10 A 232 LEU ARG SER MET LEU GLY VAL ARG GLY GLU GLU PHE ASN SEQRES 11 A 232 ILE LEU GLY ALA GLU ALA GLU GLY GLU PRO GLY GLU ILE SEQRES 12 A 232 ARG LEU SER SER ALA ASP ASP SER ALA ALA LEU ASP GLY SEQRES 13 A 232 THR THR THR ARG LEU TRP GLN ASN ASP VAL ASN VAL THR SEQRES 14 A 232 GLY GLU HIS ALA GLN VAL LEU ALA THR TYR ALA GLY GLU SEQRES 15 A 232 GLU ALA ASP GLU TRP GLU LEU ASP GLY THR ALA ALA VAL SEQRES 16 A 232 THR ARG ASN PRO TYR GLY SER GLY GLU ALA TYR PHE VAL SEQRES 17 A 232 GLY CYS ASP LEU ASP VAL ALA ASP LEU THR LYS LEU VAL SEQRES 18 A 232 ARG ALA TYR LEU ALA ALA SER SER GLN GLU ASN SEQRES 1 B 232 SER ASN ALA HIS SER ASP THR ALA ILE LEU PHE SER ALA SEQRES 2 B 232 GLU SER GLU TRP ALA THR ARG SER GLN THR LEU PRO SER SEQRES 3 B 232 MET LYS LEU ASN HIS TRP HIS ASP VAL ARG ASP TRP TYR SEQRES 4 B 232 ARG ALA PHE LEU ASP ALA GLY SER ARG ALA ASP ILE VAL SEQRES 5 B 232 PRO LEU ALA TYR ASP TRP SER SER TYR LYS THR VAL VAL SEQRES 6 B 232 LEU PRO THR VAL LEU ILE LEU SER ALA ALA ASP THR GLN SEQRES 7 B 232 ARG LEU ALA ASP PHE ALA ALA ALA GLY GLY ARG VAL VAL SEQRES 8 B 232 VAL GLY TYR ALA THR GLY LEU ILE ASP GLU HIS PHE HIS SEQRES 9 B 232 THR TRP LEU GLY GLY TYR PRO GLY ALA GLY ASP GLY LEU SEQRES 10 B 232 LEU ARG SER MET LEU GLY VAL ARG GLY GLU GLU PHE ASN SEQRES 11 B 232 ILE LEU GLY ALA GLU ALA GLU GLY GLU PRO GLY GLU ILE SEQRES 12 B 232 ARG LEU SER SER ALA ASP ASP SER ALA ALA LEU ASP GLY SEQRES 13 B 232 THR THR THR ARG LEU TRP GLN ASN ASP VAL ASN VAL THR SEQRES 14 B 232 GLY GLU HIS ALA GLN VAL LEU ALA THR TYR ALA GLY GLU SEQRES 15 B 232 GLU ALA ASP GLU TRP GLU LEU ASP GLY THR ALA ALA VAL SEQRES 16 B 232 THR ARG ASN PRO TYR GLY SER GLY GLU ALA TYR PHE VAL SEQRES 17 B 232 GLY CYS ASP LEU ASP VAL ALA ASP LEU THR LYS LEU VAL SEQRES 18 B 232 ARG ALA TYR LEU ALA ALA SER SER GLN GLU ASN FORMUL 3 HOH *123(H2 O) HELIX 1 AA1 SER A 9 ARG A 17 1 9 HELIX 2 AA2 ASN A 27 ALA A 42 1 16 HELIX 3 AA3 SER A 70 ALA A 83 1 14 HELIX 4 AA4 GLY A 109 ASP A 112 5 4 HELIX 5 AA5 GLY A 113 GLY A 120 1 8 HELIX 6 AA6 GLY A 178 TRP A 184 1 7 HELIX 7 AA7 ASP A 210 LEU A 222 1 13 HELIX 8 AA8 SER B 9 SER B 18 1 10 HELIX 9 AA9 ASN B 27 ALA B 42 1 16 HELIX 10 AB1 SER B 70 ALA B 83 1 14 HELIX 11 AB2 GLY B 113 GLY B 120 1 8 HELIX 12 AB3 GLY B 178 TRP B 184 1 7 HELIX 13 AB4 ASP B 210 LEU B 222 1 13 SHEET 1 AA1 9 ASP A 47 PRO A 50 0 SHEET 2 AA1 9 THR A 4 PHE A 8 1 N ILE A 6 O ASP A 47 SHEET 3 AA1 9 THR A 60 LEU A 63 1 O THR A 60 N ALA A 5 SHEET 4 AA1 9 ARG A 86 GLY A 90 1 O VAL A 88 N LEU A 63 SHEET 5 AA1 9 GLY B 200 VAL B 205 1 O TYR B 203 N VAL A 87 SHEET 6 AA1 9 ALA B 190 TYR B 197 -1 N THR B 193 O PHE B 204 SHEET 7 AA1 9 GLN B 171 ALA B 177 -1 N LEU B 173 O VAL B 192 SHEET 8 AA1 9 ILE B 140 SER B 144 -1 N SER B 143 O THR B 175 SHEET 9 AA1 9 THR B 155 THR B 156 -1 O THR B 156 N ILE B 140 SHEET 1 AA2 2 VAL A 121 ARG A 122 0 SHEET 2 AA2 2 ASN B 164 VAL B 165 -1 O ASN B 164 N ARG A 122 SHEET 1 AA3 2 ILE A 128 LEU A 129 0 SHEET 2 AA3 2 TRP B 159 GLN B 160 -1 O TRP B 159 N LEU A 129 SHEET 1 AA4 9 THR A 155 THR A 156 0 SHEET 2 AA4 9 ILE A 140 SER A 144 -1 N ILE A 140 O THR A 156 SHEET 3 AA4 9 GLN A 171 ALA A 177 -1 O THR A 175 N SER A 143 SHEET 4 AA4 9 ALA A 190 TYR A 197 -1 O VAL A 192 N LEU A 173 SHEET 5 AA4 9 GLY A 200 VAL A 205 -1 O PHE A 204 N THR A 193 SHEET 6 AA4 9 ARG B 86 GLY B 90 1 O VAL B 87 N TYR A 203 SHEET 7 AA4 9 THR B 60 LEU B 63 1 N LEU B 63 O VAL B 88 SHEET 8 AA4 9 THR B 4 PHE B 8 1 N LEU B 7 O VAL B 62 SHEET 9 AA4 9 ASP B 47 PRO B 50 1 O ASP B 47 N ILE B 6 SHEET 1 AA5 2 TRP A 159 GLN A 160 0 SHEET 2 AA5 2 ILE B 128 LEU B 129 -1 O LEU B 129 N TRP A 159 SHEET 1 AA6 2 ASN A 164 VAL A 165 0 SHEET 2 AA6 2 VAL B 121 ARG B 122 -1 O ARG B 122 N ASN A 164 CISPEP 1 TYR A 107 PRO A 108 0 -7.61 CISPEP 2 TYR B 107 PRO B 108 0 -9.92 CRYST1 90.549 90.549 278.000 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011044 0.006376 0.000000 0.00000 SCALE2 0.000000 0.012752 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003597 0.00000