HEADER TRANSFERASE 26-MAY-17 5VYS TITLE CRYSTAL STRUCTURE OF THE WBKC N-FORMYLTRANSFERASE (C47S VARIANT) FROM TITLE 2 BRUCELLA MELITENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GDP-MANNOSE 4,6-DEHYDRATASE / GDP-4-AMINO-4,6-DIDEOXY-D- COMPND 3 MANNOSE FORMYLTRANSFERASE; COMPND 4 CHAIN: A, B; COMPND 5 EC: 2.1.2.-,4.2.1.47; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA MELITENSIS BIOTYPE 1 (STRAIN 16M / SOURCE 3 ATCC 23456 / NCTC 10094); SOURCE 4 ORGANISM_TAXID: 224914; SOURCE 5 STRAIN: 16M / ATCC 23456 / NCTC 10094; SOURCE 6 GENE: BMEI1418; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3) KEYWDS BRUCELLOSIS, DEOXYSUGAR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.S.RIEGERT,D.P.CHANTIGIAN,J.B.THODEN,H.M.HOLDEN REVDAT 5 04-OCT-23 5VYS 1 REMARK REVDAT 4 01-JAN-20 5VYS 1 REMARK REVDAT 3 20-SEP-17 5VYS 1 REMARK REVDAT 2 26-JUL-17 5VYS 1 JRNL REVDAT 1 05-JUL-17 5VYS 0 JRNL AUTH A.S.RIEGERT,D.P.CHANTIGIAN,J.B.THODEN,P.A.TIPTON,H.M.HOLDEN JRNL TITL BIOCHEMICAL CHARACTERIZATION OF WBKC, AN N-FORMYLTRANSFERASE JRNL TITL 2 FROM BRUCELLA MELITENSIS. JRNL REF BIOCHEMISTRY V. 56 3657 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28636341 JRNL DOI 10.1021/ACS.BIOCHEM.7B00494 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 25866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1371 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1812 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3913 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.96000 REMARK 3 B22 (A**2) : 0.96000 REMARK 3 B33 (A**2) : -1.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.290 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.235 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.176 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.214 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4134 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3870 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5617 ; 1.592 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8870 ; 0.984 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 495 ; 6.880 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;30.919 ;22.865 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 657 ;15.306 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;16.890 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 607 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4622 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1009 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1977 ; 2.000 ; 2.689 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1976 ; 1.993 ; 2.689 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2467 ; 3.161 ; 4.022 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2468 ; 3.161 ; 4.023 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2157 ; 2.428 ; 3.054 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2157 ; 2.426 ; 3.053 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3149 ; 3.952 ; 4.485 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4930 ; 5.572 ;22.573 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4931 ; 5.573 ;22.580 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5VYS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-17. REMARK 100 THE DEPOSITION ID IS D_1000228166. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MONTEL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27237 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : 0.09600 REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.40500 REMARK 200 R SYM FOR SHELL (I) : 0.40500 REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5VYR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19-25%PEG-5000, 5 MM GDP-PEROSAMINE, 5 REMARK 280 MM FOLINIC ACID, 100 MM MOPS, PH 7, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.35000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.96350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.96350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 176.02500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.96350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.96350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.67500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.96350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.96350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 176.02500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.96350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.96350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.67500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 117.35000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ILE A 237 REMARK 465 ASP A 238 REMARK 465 GLY A 239 REMARK 465 LYS A 240 REMARK 465 VAL A 241 REMARK 465 ARG A 255 REMARK 465 GLY A 256 REMARK 465 ILE A 257 REMARK 465 PRO A 258 REMARK 465 SER A 259 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 ILE B 247 REMARK 465 ASP B 248 REMARK 465 ILE B 249 REMARK 465 TYR B 250 REMARK 465 ARG B 251 REMARK 465 SER B 252 REMARK 465 LEU B 253 REMARK 465 MET B 254 REMARK 465 ARG B 255 REMARK 465 GLY B 256 REMARK 465 ILE B 257 REMARK 465 PRO B 258 REMARK 465 SER B 259 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 175 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 223 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 78 70.84 65.77 REMARK 500 PRO A 108 46.59 -81.82 REMARK 500 THR A 131 -146.74 -137.04 REMARK 500 ASP A 139 -164.10 -109.28 REMARK 500 GLU A 202 120.06 -30.19 REMARK 500 PHE A 205 19.75 56.42 REMARK 500 ASP B 43 -166.48 -127.37 REMARK 500 THR B 131 -152.66 -132.82 REMARK 500 ASP B 139 -160.56 -107.78 REMARK 500 PHE B 227 84.59 -162.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1YJ A 301 REMARK 610 1YJ B 301 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1YJ A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1YJ B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GMP B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VYR RELATED DB: PDB REMARK 900 RELATED ID: 5VYU RELATED DB: PDB REMARK 900 RELATED ID: 5VYT RELATED DB: PDB DBREF 5VYS A 1 259 UNP F8WJP6 F8WJP6_BRUME 1 259 DBREF 5VYS B 1 259 UNP F8WJP6 F8WJP6_BRUME 1 259 SEQADV 5VYS GLY A -1 UNP F8WJP6 EXPRESSION TAG SEQADV 5VYS HIS A 0 UNP F8WJP6 EXPRESSION TAG SEQADV 5VYS SER A 47 UNP F8WJP6 CYS 47 ENGINEERED MUTATION SEQADV 5VYS ALA A 78 UNP F8WJP6 ASP 78 ENGINEERED MUTATION SEQADV 5VYS GLY B -1 UNP F8WJP6 EXPRESSION TAG SEQADV 5VYS HIS B 0 UNP F8WJP6 EXPRESSION TAG SEQADV 5VYS SER B 47 UNP F8WJP6 CYS 47 ENGINEERED MUTATION SEQADV 5VYS ALA B 78 UNP F8WJP6 ASP 78 ENGINEERED MUTATION SEQRES 1 A 261 GLY HIS MET ALA ILE ALA PRO ASN THR ARG VAL LEU VAL SEQRES 2 A 261 ALA GLY TYR GLY LEU PRO ALA GLU PHE CYS VAL THR THR SEQRES 3 A 261 LEU ILE GLY MET GLY VAL GLU ILE ASP LYS ILE ALA VAL SEQRES 4 A 261 ALA THR HIS ARG GLU ASP ASN ARG ASN SER GLY LEU HIS SEQRES 5 A 261 SER MET LEU ARG LEU ARG ASN ILE GLN PHE THR THR ALA SEQRES 6 A 261 ALA ALA ASN SER GLU GLU PHE TYR GLU PHE GLY ALA ASN SEQRES 7 A 261 PHE ALA PRO ASP MET ILE ILE SER MET HIS TYR ARG SER SEQRES 8 A 261 LEU ILE PRO GLY ARG PHE LEU LYS LEU ALA LYS LYS GLY SEQRES 9 A 261 SER VAL ASN LEU HIS PRO SER LEU LEU PRO ALA TYR ARG SEQRES 10 A 261 GLY THR ASN SER VAL ALA TRP VAL ILE ILE ASN GLY GLU SEQRES 11 A 261 SER GLU THR GLY PHE SER TYR HIS ARG MET ASP GLU ASN SEQRES 12 A 261 PHE ASP THR GLY ALA ILE LEU LEU GLN GLU ARG ILE SER SEQRES 13 A 261 VAL GLU GLU THR ASP THR ALA PHE SER LEU PHE HIS ARG SEQRES 14 A 261 GLN ILE ALA ARG ALA MET LEU ARG LEU GLU GLU VAL ILE SEQRES 15 A 261 LEU LYS LEU ASP GLN GLY ASP PRO GLY PHE ALA GLN LEU SEQRES 16 A 261 GLY GLU ALA SER TYR TYR ALA ARG GLU LEU PRO PHE GLY SEQRES 17 A 261 GLY VAL ILE ASP PRO ARG TRP SER GLU VAL GLN ILE ASP SEQRES 18 A 261 ARG PHE ILE ARG ALA MET PHE PHE PRO PRO PHE PRO PRO SEQRES 19 A 261 ALA VAL LEU LYS ILE ASP GLY LYS VAL TYR TYR VAL PRO SEQRES 20 A 261 SER ILE ASP ILE TYR ARG SER LEU MET ARG GLY ILE PRO SEQRES 21 A 261 SER SEQRES 1 B 261 GLY HIS MET ALA ILE ALA PRO ASN THR ARG VAL LEU VAL SEQRES 2 B 261 ALA GLY TYR GLY LEU PRO ALA GLU PHE CYS VAL THR THR SEQRES 3 B 261 LEU ILE GLY MET GLY VAL GLU ILE ASP LYS ILE ALA VAL SEQRES 4 B 261 ALA THR HIS ARG GLU ASP ASN ARG ASN SER GLY LEU HIS SEQRES 5 B 261 SER MET LEU ARG LEU ARG ASN ILE GLN PHE THR THR ALA SEQRES 6 B 261 ALA ALA ASN SER GLU GLU PHE TYR GLU PHE GLY ALA ASN SEQRES 7 B 261 PHE ALA PRO ASP MET ILE ILE SER MET HIS TYR ARG SER SEQRES 8 B 261 LEU ILE PRO GLY ARG PHE LEU LYS LEU ALA LYS LYS GLY SEQRES 9 B 261 SER VAL ASN LEU HIS PRO SER LEU LEU PRO ALA TYR ARG SEQRES 10 B 261 GLY THR ASN SER VAL ALA TRP VAL ILE ILE ASN GLY GLU SEQRES 11 B 261 SER GLU THR GLY PHE SER TYR HIS ARG MET ASP GLU ASN SEQRES 12 B 261 PHE ASP THR GLY ALA ILE LEU LEU GLN GLU ARG ILE SER SEQRES 13 B 261 VAL GLU GLU THR ASP THR ALA PHE SER LEU PHE HIS ARG SEQRES 14 B 261 GLN ILE ALA ARG ALA MET LEU ARG LEU GLU GLU VAL ILE SEQRES 15 B 261 LEU LYS LEU ASP GLN GLY ASP PRO GLY PHE ALA GLN LEU SEQRES 16 B 261 GLY GLU ALA SER TYR TYR ALA ARG GLU LEU PRO PHE GLY SEQRES 17 B 261 GLY VAL ILE ASP PRO ARG TRP SER GLU VAL GLN ILE ASP SEQRES 18 B 261 ARG PHE ILE ARG ALA MET PHE PHE PRO PRO PHE PRO PRO SEQRES 19 B 261 ALA VAL LEU LYS ILE ASP GLY LYS VAL TYR TYR VAL PRO SEQRES 20 B 261 SER ILE ASP ILE TYR ARG SER LEU MET ARG GLY ILE PRO SEQRES 21 B 261 SER HET 1YJ A 301 12 HET EDO A 302 4 HET GDP A 303 28 HET 1YJ B 301 12 HET GDP B 302 28 HET GMP B 303 20 HETNAM 1YJ N-[4-({[(6R)-2-AMINO-4-OXO-3,4,5,6,7,8- HETNAM 2 1YJ HEXAHYDROPTERIDIN-6-YL]METHYL}AMINO)BENZOYL]-L- HETNAM 3 1YJ GLUTAMIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM GMP GUANOSINE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 1YJ 2(C19 H23 N7 O6) FORMUL 4 EDO C2 H6 O2 FORMUL 5 GDP 2(C10 H15 N5 O11 P2) FORMUL 8 GMP C10 H13 N5 O5 FORMUL 9 HOH *250(H2 O) HELIX 1 AA1 TYR A 14 MET A 28 1 15 HELIX 2 AA2 GLU A 31 ASP A 33 5 3 HELIX 3 AA3 ASN A 46 ASN A 57 1 12 HELIX 4 AA4 SER A 67 ALA A 78 1 12 HELIX 5 AA5 PRO A 92 LYS A 97 1 6 HELIX 6 AA6 ASN A 118 ASN A 126 1 9 HELIX 7 AA7 THR A 160 LEU A 174 1 15 HELIX 8 AA8 ARG A 175 GLN A 185 1 11 HELIX 9 AA9 LEU A 203 VAL A 208 5 6 HELIX 10 AB1 SER A 214 PHE A 226 1 13 HELIX 11 AB2 SER A 246 MET A 254 1 9 HELIX 12 AB3 TYR B 14 MET B 28 1 15 HELIX 13 AB4 GLU B 31 ASP B 33 5 3 HELIX 14 AB5 ASN B 46 ARG B 56 1 11 HELIX 15 AB6 SER B 67 ALA B 78 1 12 HELIX 16 AB7 PRO B 92 LYS B 97 1 6 HELIX 17 AB8 ASN B 118 ASN B 126 1 9 HELIX 18 AB9 THR B 160 ARG B 175 1 16 HELIX 19 AC1 ARG B 175 GLN B 185 1 11 HELIX 20 AC2 LEU B 203 VAL B 208 5 6 HELIX 21 AC3 SER B 214 PHE B 226 1 13 SHEET 1 AA1 7 GLN A 59 THR A 61 0 SHEET 2 AA1 7 ILE A 35 ALA A 38 1 N VAL A 37 O GLN A 59 SHEET 3 AA1 7 VAL A 9 GLY A 13 1 N VAL A 11 O ALA A 38 SHEET 4 AA1 7 MET A 81 MET A 85 1 O ILE A 83 N ALA A 12 SHEET 5 AA1 7 SER A 103 HIS A 107 1 O VAL A 104 N SER A 84 SHEET 6 AA1 7 GLU A 130 HIS A 136 -1 O SER A 134 N HIS A 107 SHEET 7 AA1 7 ILE A 147 SER A 154 -1 O LEU A 149 N TYR A 135 SHEET 1 AA2 2 ARG A 115 GLY A 116 0 SHEET 2 AA2 2 TYR A 198 TYR A 199 1 O TYR A 199 N ARG A 115 SHEET 1 AA3 2 ALA A 233 VAL A 234 0 SHEET 2 AA3 2 TYR A 243 VAL A 244 -1 O VAL A 244 N ALA A 233 SHEET 1 AA4 7 GLN B 59 THR B 61 0 SHEET 2 AA4 7 ILE B 35 ALA B 38 1 N VAL B 37 O GLN B 59 SHEET 3 AA4 7 VAL B 9 GLY B 13 1 N VAL B 11 O ALA B 38 SHEET 4 AA4 7 MET B 81 MET B 85 1 O ILE B 83 N LEU B 10 SHEET 5 AA4 7 SER B 103 HIS B 107 1 O VAL B 104 N SER B 84 SHEET 6 AA4 7 GLU B 130 HIS B 136 -1 O SER B 134 N HIS B 107 SHEET 7 AA4 7 ILE B 147 SER B 154 -1 O LEU B 149 N TYR B 135 SHEET 1 AA5 2 ARG B 115 GLY B 116 0 SHEET 2 AA5 2 TYR B 198 TYR B 199 1 O TYR B 199 N ARG B 115 SHEET 1 AA6 2 VAL B 234 LYS B 236 0 SHEET 2 AA6 2 VAL B 241 TYR B 243 -1 O TYR B 242 N LEU B 235 CISPEP 1 LEU A 111 PRO A 112 0 4.69 CISPEP 2 PRO A 228 PRO A 229 0 13.42 CISPEP 3 LEU B 111 PRO B 112 0 14.89 CISPEP 4 PRO B 228 PRO B 229 0 6.58 SITE 1 AC1 12 TYR A 87 SER A 89 LEU A 90 ILE A 91 SITE 2 AC1 12 ASN A 105 HIS A 136 ASP A 139 ASN A 141 SITE 3 AC1 12 PHE A 142 ASP A 143 HOH A 401 HOH A 441 SITE 1 AC2 5 GLU A 128 GLU A 156 GLU A 157 ARG A 220 SITE 2 AC2 5 ARG A 223 SITE 1 AC3 16 ARG A 45 ARG A 88 THR A 117 ASN A 118 SITE 2 AC3 16 VAL A 120 ALA A 121 ALA A 161 ARG A 201 SITE 3 AC3 16 MET A 225 PHE A 227 PHE A 230 PRO A 231 SITE 4 AC3 16 HOH A 415 HOH A 445 HOH A 472 HOH A 480 SITE 1 AC4 12 SER B 89 ILE B 91 LEU B 96 ASN B 105 SITE 2 AC4 12 HIS B 136 MET B 138 ASP B 139 ASN B 141 SITE 3 AC4 12 PHE B 142 ASP B 143 HOH B 408 HOH B 417 SITE 1 AC5 14 ARG B 45 ARG B 88 ASN B 118 ALA B 161 SITE 2 AC5 14 PHE B 165 LEU B 203 MET B 225 PHE B 227 SITE 3 AC5 14 PHE B 230 PRO B 231 HOH B 402 HOH B 432 SITE 4 AC5 14 HOH B 443 HOH B 479 SITE 1 AC6 9 ARG A 212 ARG B 88 SER B 89 GLY B 116 SITE 2 AC6 9 THR B 117 PHE B 142 ASP B 143 ARG B 201 SITE 3 AC6 9 HOH B 406 CRYST1 65.927 65.927 234.700 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015168 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015168 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004261 0.00000