data_5VZM # _entry.id 5VZM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.319 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5VZM WWPDB D_1000228147 BMRB 30300 # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution NMR structure of human Rev1 (932-1039) in complex with ubiquitin' _pdbx_database_related.db_id 30300 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5VZM _pdbx_database_status.recvd_initial_deposition_date 2017-05-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Cui, G.' 1 ? 'Botuyan, M.V.' 2 ? 'Mer, G.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Mol. Biol.' _citation.journal_id_ASTM JMOBAK _citation.journal_id_CSD 0070 _citation.journal_id_ISSN 1089-8638 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 430 _citation.language ? _citation.page_first 2042 _citation.page_last 2050 _citation.title 'Structural Basis for the Interaction of Mutasome Assembly Factor REV1 with Ubiquitin.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.jmb.2018.05.017 _citation.pdbx_database_id_PubMed 29778604 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cui, G.' 1 ? primary 'Botuyan, M.V.' 2 ? primary 'Mer, G.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Ubiquitin 8576.831 1 ? ? 'UNP residues 1-76' ? 2 polymer man 'DNA repair protein REV1' 11985.354 1 2.7.7.- ? 'UNP residues 933-1040' ? # _entity_name_com.entity_id 2 _entity_name_com.name 'Alpha integrin-binding protein 80,AIBP80,Rev1-like terminal deoxycytidyl transferase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG A ? 2 'polypeptide(L)' no no ;GHMPSPSQLDQSVLEALPPDLREQVEQVCAVQQAESHGDKKKEPVNGCNTGILPQPVGTVLLQIPEPQESNSDAGINLIA LPAFSQVDPEVFAALPAELQRELKAAYDQRQ ; ;GHMPSPSQLDQSVLEALPPDLREQVEQVCAVQQAESHGDKKKEPVNGCNTGILPQPVGTVLLQIPEPQESNSDAGINLIA LPAFSQVDPEVFAALPAELQRELKAAYDQRQ ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 ILE n 1 4 PHE n 1 5 VAL n 1 6 LYS n 1 7 THR n 1 8 LEU n 1 9 THR n 1 10 GLY n 1 11 LYS n 1 12 THR n 1 13 ILE n 1 14 THR n 1 15 LEU n 1 16 GLU n 1 17 VAL n 1 18 GLU n 1 19 PRO n 1 20 SER n 1 21 ASP n 1 22 THR n 1 23 ILE n 1 24 GLU n 1 25 ASN n 1 26 VAL n 1 27 LYS n 1 28 ALA n 1 29 LYS n 1 30 ILE n 1 31 GLN n 1 32 ASP n 1 33 LYS n 1 34 GLU n 1 35 GLY n 1 36 ILE n 1 37 PRO n 1 38 PRO n 1 39 ASP n 1 40 GLN n 1 41 GLN n 1 42 ARG n 1 43 LEU n 1 44 ILE n 1 45 PHE n 1 46 ALA n 1 47 GLY n 1 48 LYS n 1 49 GLN n 1 50 LEU n 1 51 GLU n 1 52 ASP n 1 53 GLY n 1 54 ARG n 1 55 THR n 1 56 LEU n 1 57 SER n 1 58 ASP n 1 59 TYR n 1 60 ASN n 1 61 ILE n 1 62 GLN n 1 63 LYS n 1 64 GLU n 1 65 SER n 1 66 THR n 1 67 LEU n 1 68 HIS n 1 69 LEU n 1 70 VAL n 1 71 LEU n 1 72 ARG n 1 73 LEU n 1 74 ARG n 1 75 GLY n 1 76 GLY n 2 1 GLY n 2 2 HIS n 2 3 MET n 2 4 PRO n 2 5 SER n 2 6 PRO n 2 7 SER n 2 8 GLN n 2 9 LEU n 2 10 ASP n 2 11 GLN n 2 12 SER n 2 13 VAL n 2 14 LEU n 2 15 GLU n 2 16 ALA n 2 17 LEU n 2 18 PRO n 2 19 PRO n 2 20 ASP n 2 21 LEU n 2 22 ARG n 2 23 GLU n 2 24 GLN n 2 25 VAL n 2 26 GLU n 2 27 GLN n 2 28 VAL n 2 29 CYS n 2 30 ALA n 2 31 VAL n 2 32 GLN n 2 33 GLN n 2 34 ALA n 2 35 GLU n 2 36 SER n 2 37 HIS n 2 38 GLY n 2 39 ASP n 2 40 LYS n 2 41 LYS n 2 42 LYS n 2 43 GLU n 2 44 PRO n 2 45 VAL n 2 46 ASN n 2 47 GLY n 2 48 CYS n 2 49 ASN n 2 50 THR n 2 51 GLY n 2 52 ILE n 2 53 LEU n 2 54 PRO n 2 55 GLN n 2 56 PRO n 2 57 VAL n 2 58 GLY n 2 59 THR n 2 60 VAL n 2 61 LEU n 2 62 LEU n 2 63 GLN n 2 64 ILE n 2 65 PRO n 2 66 GLU n 2 67 PRO n 2 68 GLN n 2 69 GLU n 2 70 SER n 2 71 ASN n 2 72 SER n 2 73 ASP n 2 74 ALA n 2 75 GLY n 2 76 ILE n 2 77 ASN n 2 78 LEU n 2 79 ILE n 2 80 ALA n 2 81 LEU n 2 82 PRO n 2 83 ALA n 2 84 PHE n 2 85 SER n 2 86 GLN n 2 87 VAL n 2 88 ASP n 2 89 PRO n 2 90 GLU n 2 91 VAL n 2 92 PHE n 2 93 ALA n 2 94 ALA n 2 95 LEU n 2 96 PRO n 2 97 ALA n 2 98 GLU n 2 99 LEU n 2 100 GLN n 2 101 ARG n 2 102 GLU n 2 103 LEU n 2 104 LYS n 2 105 ALA n 2 106 ALA n 2 107 TYR n 2 108 ASP n 2 109 GLN n 2 110 ARG n 2 111 GLN n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 76 Human ? UBB ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? Plasmid ? ? ? pRSUb ? ? 2 1 sample 'Biological sequence' 1 111 Human ? 'REV1, REV1L' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? Plasmid ? ? ? pTEV ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP UBB_HUMAN P0CG47 ? 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1 2 UNP REV1_HUMAN Q9UBZ9 ? 2 ;PSPSQLDQSVLEALPPDLREQVEQVCAVQQAESHGDKKKEPVNGCNTGILPQPVGTVLLQIPEPQESNSDAGINLIALPA FSQVDPEVFAALPAELQRELKAAYDQRQ ; 933 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5VZM A 1 ? 76 ? P0CG47 1 ? 76 ? 1 76 2 2 5VZM B 4 ? 111 ? Q9UBZ9 933 ? 1040 ? 932 1039 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 5VZM GLY B 1 ? UNP Q9UBZ9 ? ? 'expression tag' -3 1 2 5VZM HIS B 2 ? UNP Q9UBZ9 ? ? 'expression tag' -2 2 2 5VZM MET B 3 ? UNP Q9UBZ9 ? ? 'expression tag' -1 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 1 isotropic 2 1 1 '2D 1H-13C HSQC' 1 isotropic 3 1 1 '2D 1H-13C HSQC aromatic' 1 isotropic 4 1 1 '3D HNCACB' 1 isotropic 5 1 1 '3D CBCA(CO)NH' 1 isotropic 6 1 1 '3D HNCO' 1 isotropic 7 1 1 '3D HN(CA)CO' 1 isotropic 8 1 1 '3D HBHA(CO)NH' 1 isotropic 9 1 1 '3D H(CCO)NH' 1 isotropic 11 1 1 '3D (H)CC(CO)NH' 1 isotropic 28 1 1 '3D HCCH-TOCSY' 1 isotropic 12 1 1 '3D 1H-15N TOCSY' 1 isotropic 13 1 1 '3D 1H-15N NOESY' 1 isotropic 14 1 1 '3D 1H-13C NOESY' 1 isotropic 15 1 1 '3D 1H-13C NOESY aromatic' 1 isotropic 16 2 2 '2D 1H-15N HSQC' 1 isotropic 17 2 2 '2D 1H-13C HSQC' 1 isotropic 18 2 2 '2D 1H-13C HSQC aromatic' 1 isotropic 19 2 2 '3D HNCACB' 1 isotropic 20 2 2 '3D CBCA(CO)NH' 1 isotropic 21 2 2 '3D HNCO' 1 isotropic 22 2 2 '3D HN(CA)CO' 1 isotropic 23 2 2 '3D HBHA(CO)NH' 1 isotropic 24 2 2 '3D H(CCO)NH' 1 isotropic 26 2 2 '3D (H)CC(CO)NH' 1 isotropic 27 2 2 '3D HCCH-TOCSY' 1 isotropic 29 2 2 '3D 1H-15N TOCSY' 1 isotropic 30 2 2 '3D 1H-15N NOESY' 1 isotropic 31 2 2 '3D 1H-13C NOESY' 1 isotropic 32 2 2 '3D 1H-13C NOESY aromatic' 1 isotropic 33 2 2 '13C,15N-filetered/edited NOESY' 1 isotropic 34 2 3 '2D 1H-15N HSQC' 1 isotropic 35 2 3 '2D 1H-13C HSQC' 1 isotropic 36 2 3 '3D 1H-15N NOESY' 1 isotropic 37 2 3 '3D 1H-13C NOESY' 1 isotropic 38 2 3 '13C,15N-filetered/edited NOESY' 1 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 303 atm 1 7.0 '20 mM sodium phosphate' ? ? mM Conditions_1 ? pH ? ? K 2 303 atm 1 6.8 '50 mM sodium phosphate' ? ? mM Conditions_2 ? pH ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 20 mM Sodium phosphate buffer, 90% H2O/10% D2O' '90% H2O/10% D2O' Sample_1 solution ? 2 '1 mM [U-100% 13C; U-100% 15N] Rev1, 3 mM Ubiquitin, 50 mM Sodium phosphate buffer, 90% H2O/10% D2O' '90% H2O/10% D2O' Sample_2 solution ? 3 '3 mM Rev1, 1 mM [U-100% 13C; U-100% 15N] Ubiquitin, 50 mM Sodium phosphate buffer, 90% H2O/10% D2O' '90% H2O/10% D2O' Sample_3 solution ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 5VZM _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 8 # _pdbx_nmr_ensemble.entry_id 5VZM _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5VZM _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin ? 'Bruker Biospin' 2 'data analysis' NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 3 'data analysis' NMRDraw ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 4 'data analysis' NMRView ? 'Johnson, One Moon Scientific' 5 'chemical shift assignment' SANE ? 'Duggan, Legge, Dyson & Wright' 6 'data analysis' TALOS ? 'Cornilescu, Delaglio and Bax' 7 'structure calculation' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 8 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5VZM _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5VZM _struct.title 'Solution NMR structure of human Rev1 (932-1039) in complex with ubiquitin' _struct.pdbx_descriptor 'Ubiquitin, DNA repair protein REV1 (E.C.2.7.7.-)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5VZM _struct_keywords.text 'Translesion DNA synthesis, DNA repair, DNA replication, Rev1, ubiquitin, PCNA, PROTEIN BINDING' _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 22 ? GLY A 35 ? THR A 22 GLY A 35 1 ? 14 HELX_P HELX_P2 AA2 PRO A 37 ? ASP A 39 ? PRO A 37 ASP A 39 5 ? 3 HELX_P HELX_P3 AA3 LEU A 56 ? ASN A 60 ? LEU A 56 ASN A 60 5 ? 5 HELX_P HELX_P4 AA4 ASP B 10 ? GLU B 15 ? ASP B 938 GLU B 943 1 ? 6 HELX_P HELX_P5 AA5 PRO B 18 ? GLN B 27 ? PRO B 946 GLN B 955 1 ? 10 HELX_P HELX_P6 AA6 ALA B 30 ? GLU B 35 ? ALA B 958 GLU B 963 5 ? 6 HELX_P HELX_P7 AA7 GLN B 55 ? THR B 59 ? GLN B 983 THR B 987 5 ? 5 HELX_P HELX_P8 AA8 ASP B 88 ? LEU B 95 ? ASP B 1016 LEU B 1023 1 ? 8 HELX_P HELX_P9 AA9 PRO B 96 ? GLN B 109 ? PRO B 1024 GLN B 1037 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 29 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 48 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 957 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 976 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.035 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 12 ? GLU A 16 ? THR A 12 GLU A 16 AA1 2 GLN A 2 ? THR A 7 ? GLN A 2 THR A 7 AA1 3 THR A 66 ? LEU A 71 ? THR A 66 LEU A 71 AA1 4 GLN A 41 ? PHE A 45 ? GLN A 41 PHE A 45 AA1 5 LYS A 48 ? GLN A 49 ? LYS A 48 GLN A 49 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ILE A 13 ? O ILE A 13 N VAL A 5 ? N VAL A 5 AA1 2 3 N LYS A 6 ? N LYS A 6 O LEU A 67 ? O LEU A 67 AA1 3 4 O VAL A 70 ? O VAL A 70 N ARG A 42 ? N ARG A 42 AA1 4 5 N PHE A 45 ? N PHE A 45 O LYS A 48 ? O LYS A 48 # _atom_sites.entry_id 5VZM _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 THR 22 22 22 THR THR A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 ILE 30 30 30 ILE ILE A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 LEU 67 67 67 LEU LEU A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 GLY 76 76 76 GLY GLY A . n B 2 1 GLY 1 -3 -3 GLY GLY B . n B 2 2 HIS 2 -2 -2 HIS HIS B . n B 2 3 MET 3 -1 -1 MET MET B . n B 2 4 PRO 4 932 932 PRO PRO B . n B 2 5 SER 5 933 933 SER SER B . n B 2 6 PRO 6 934 934 PRO PRO B . n B 2 7 SER 7 935 935 SER SER B . n B 2 8 GLN 8 936 936 GLN GLN B . n B 2 9 LEU 9 937 937 LEU LEU B . n B 2 10 ASP 10 938 938 ASP ASP B . n B 2 11 GLN 11 939 939 GLN GLN B . n B 2 12 SER 12 940 940 SER SER B . n B 2 13 VAL 13 941 941 VAL VAL B . n B 2 14 LEU 14 942 942 LEU LEU B . n B 2 15 GLU 15 943 943 GLU GLU B . n B 2 16 ALA 16 944 944 ALA ALA B . n B 2 17 LEU 17 945 945 LEU LEU B . n B 2 18 PRO 18 946 946 PRO PRO B . n B 2 19 PRO 19 947 947 PRO PRO B . n B 2 20 ASP 20 948 948 ASP ASP B . n B 2 21 LEU 21 949 949 LEU LEU B . n B 2 22 ARG 22 950 950 ARG ARG B . n B 2 23 GLU 23 951 951 GLU GLU B . n B 2 24 GLN 24 952 952 GLN GLN B . n B 2 25 VAL 25 953 953 VAL VAL B . n B 2 26 GLU 26 954 954 GLU GLU B . n B 2 27 GLN 27 955 955 GLN GLN B . n B 2 28 VAL 28 956 956 VAL VAL B . n B 2 29 CYS 29 957 957 CYS CYS B . n B 2 30 ALA 30 958 958 ALA ALA B . n B 2 31 VAL 31 959 959 VAL VAL B . n B 2 32 GLN 32 960 960 GLN GLN B . n B 2 33 GLN 33 961 961 GLN GLN B . n B 2 34 ALA 34 962 962 ALA ALA B . n B 2 35 GLU 35 963 963 GLU GLU B . n B 2 36 SER 36 964 964 SER SER B . n B 2 37 HIS 37 965 965 HIS HIS B . n B 2 38 GLY 38 966 966 GLY GLY B . n B 2 39 ASP 39 967 967 ASP ASP B . n B 2 40 LYS 40 968 968 LYS LYS B . n B 2 41 LYS 41 969 969 LYS LYS B . n B 2 42 LYS 42 970 970 LYS LYS B . n B 2 43 GLU 43 971 971 GLU GLU B . n B 2 44 PRO 44 972 972 PRO PRO B . n B 2 45 VAL 45 973 973 VAL VAL B . n B 2 46 ASN 46 974 974 ASN ASN B . n B 2 47 GLY 47 975 975 GLY GLY B . n B 2 48 CYS 48 976 976 CYS CYS B . n B 2 49 ASN 49 977 977 ASN ASN B . n B 2 50 THR 50 978 978 THR THR B . n B 2 51 GLY 51 979 979 GLY GLY B . n B 2 52 ILE 52 980 980 ILE ILE B . n B 2 53 LEU 53 981 981 LEU LEU B . n B 2 54 PRO 54 982 982 PRO PRO B . n B 2 55 GLN 55 983 983 GLN GLN B . n B 2 56 PRO 56 984 984 PRO PRO B . n B 2 57 VAL 57 985 985 VAL VAL B . n B 2 58 GLY 58 986 986 GLY GLY B . n B 2 59 THR 59 987 987 THR THR B . n B 2 60 VAL 60 988 988 VAL VAL B . n B 2 61 LEU 61 989 989 LEU LEU B . n B 2 62 LEU 62 990 990 LEU LEU B . n B 2 63 GLN 63 991 991 GLN GLN B . n B 2 64 ILE 64 992 992 ILE ILE B . n B 2 65 PRO 65 993 993 PRO PRO B . n B 2 66 GLU 66 994 994 GLU GLU B . n B 2 67 PRO 67 995 995 PRO PRO B . n B 2 68 GLN 68 996 996 GLN GLN B . n B 2 69 GLU 69 997 997 GLU GLU B . n B 2 70 SER 70 998 998 SER SER B . n B 2 71 ASN 71 999 999 ASN ASN B . n B 2 72 SER 72 1000 1000 SER SER B . n B 2 73 ASP 73 1001 1001 ASP ASP B . n B 2 74 ALA 74 1002 1002 ALA ALA B . n B 2 75 GLY 75 1003 1003 GLY GLY B . n B 2 76 ILE 76 1004 1004 ILE ILE B . n B 2 77 ASN 77 1005 1005 ASN ASN B . n B 2 78 LEU 78 1006 1006 LEU LEU B . n B 2 79 ILE 79 1007 1007 ILE ILE B . n B 2 80 ALA 80 1008 1008 ALA ALA B . n B 2 81 LEU 81 1009 1009 LEU LEU B . n B 2 82 PRO 82 1010 1010 PRO PRO B . n B 2 83 ALA 83 1011 1011 ALA ALA B . n B 2 84 PHE 84 1012 1012 PHE PHE B . n B 2 85 SER 85 1013 1013 SER SER B . n B 2 86 GLN 86 1014 1014 GLN GLN B . n B 2 87 VAL 87 1015 1015 VAL VAL B . n B 2 88 ASP 88 1016 1016 ASP ASP B . n B 2 89 PRO 89 1017 1017 PRO PRO B . n B 2 90 GLU 90 1018 1018 GLU GLU B . n B 2 91 VAL 91 1019 1019 VAL VAL B . n B 2 92 PHE 92 1020 1020 PHE PHE B . n B 2 93 ALA 93 1021 1021 ALA ALA B . n B 2 94 ALA 94 1022 1022 ALA ALA B . n B 2 95 LEU 95 1023 1023 LEU LEU B . n B 2 96 PRO 96 1024 1024 PRO PRO B . n B 2 97 ALA 97 1025 1025 ALA ALA B . n B 2 98 GLU 98 1026 1026 GLU GLU B . n B 2 99 LEU 99 1027 1027 LEU LEU B . n B 2 100 GLN 100 1028 1028 GLN GLN B . n B 2 101 ARG 101 1029 1029 ARG ARG B . n B 2 102 GLU 102 1030 1030 GLU GLU B . n B 2 103 LEU 103 1031 1031 LEU LEU B . n B 2 104 LYS 104 1032 1032 LYS LYS B . n B 2 105 ALA 105 1033 1033 ALA ALA B . n B 2 106 ALA 106 1034 1034 ALA ALA B . n B 2 107 TYR 107 1035 1035 TYR TYR B . n B 2 108 ASP 108 1036 1036 ASP ASP B . n B 2 109 GLN 109 1037 1037 GLN GLN B . n B 2 110 ARG 110 1038 1038 ARG ARG B . n B 2 111 GLN 111 1039 1039 GLN GLN B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-05-23 2 'Structure model' 1 1 2018-07-04 3 'Structure model' 1 2 2019-12-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' pdbx_audit_support 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 3 'Structure model' '_pdbx_audit_support.funding_organization' 14 3 'Structure model' '_pdbx_nmr_software.name' 15 3 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 Ubiquitin 1 ? mM '[U-100% 13C; U-100% 15N]' 1 'Sodium phosphate buffer' 20 ? mM 'natural abundance' 2 Rev1 1 ? mM '[U-100% 13C; U-100% 15N]' 2 Ubiquitin 3 ? mM 'natural abundance' 2 'Sodium phosphate buffer' 50 ? mM 'natural abundance' 3 Rev1 3 ? mM 'natural abundance' 3 Ubiquitin 1 ? mM '[U-100% 13C; U-100% 15N]' 3 'Sodium phosphate buffer' 50 ? mM 'natural abundance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 5 OD2 B ASP 938 ? ? HG B SER 940 ? ? 1.58 2 6 OE2 B GLU 971 ? ? HG1 B THR 978 ? ? 1.59 3 8 OD1 B ASP 938 ? ? HG B SER 940 ? ? 1.58 4 10 OD1 B ASP 938 ? ? HG B SER 940 ? ? 1.55 5 11 OD2 B ASP 938 ? ? HG B SER 940 ? ? 1.57 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 3 NE A ARG 54 ? ? CZ A ARG 54 ? ? NH2 A ARG 54 ? ? 117.15 120.30 -3.15 0.50 N 2 4 NE A ARG 54 ? ? CZ A ARG 54 ? ? NH2 A ARG 54 ? ? 117.16 120.30 -3.14 0.50 N 3 9 NE A ARG 54 ? ? CZ A ARG 54 ? ? NH2 A ARG 54 ? ? 117.29 120.30 -3.01 0.50 N 4 10 NE A ARG 54 ? ? CZ A ARG 54 ? ? NH1 A ARG 54 ? ? 117.23 120.30 -3.07 0.50 N 5 11 NE A ARG 54 ? ? CZ A ARG 54 ? ? NH2 A ARG 54 ? ? 117.10 120.30 -3.20 0.50 N 6 14 CB B TYR 1035 ? ? CG B TYR 1035 ? ? CD1 B TYR 1035 ? ? 117.19 121.00 -3.81 0.60 N 7 15 NE A ARG 54 ? ? CZ A ARG 54 ? ? NH1 A ARG 54 ? ? 117.06 120.30 -3.24 0.50 N 8 15 CB B TYR 1035 ? ? CG B TYR 1035 ? ? CD1 B TYR 1035 ? ? 116.99 121.00 -4.01 0.60 N 9 18 NE A ARG 54 ? ? CZ A ARG 54 ? ? NH2 A ARG 54 ? ? 117.12 120.30 -3.18 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 46 ? ? 39.61 38.41 2 1 GLN A 62 ? ? -120.69 -161.23 3 1 GLU A 64 ? ? 39.69 51.91 4 1 SER B 935 ? ? -141.78 13.61 5 1 GLN B 936 ? ? -159.75 -4.51 6 1 CYS B 957 ? ? -177.34 -179.16 7 1 ASP B 967 ? ? 65.53 -33.45 8 1 ASN B 977 ? ? 49.85 26.76 9 1 THR B 987 ? ? -130.04 -32.84 10 1 ASN B 999 ? ? -145.69 51.33 11 1 PRO B 1010 ? ? -51.68 103.20 12 1 GLN B 1014 ? ? -148.84 -13.57 13 2 ALA A 46 ? ? 36.63 44.30 14 2 GLN A 62 ? ? -118.52 -162.60 15 2 GLU B 963 ? ? -146.05 -31.20 16 2 ASP B 967 ? ? 61.40 -42.45 17 2 VAL B 985 ? ? -144.69 47.45 18 2 THR B 987 ? ? -127.72 -53.35 19 2 VAL B 988 ? ? -141.01 34.74 20 2 GLU B 994 ? ? -141.60 -38.48 21 2 ALA B 1008 ? ? 50.41 16.48 22 2 PRO B 1010 ? ? -48.21 93.92 23 2 GLN B 1014 ? ? -146.77 -12.17 24 3 ALA A 46 ? ? 38.14 40.55 25 3 GLN A 62 ? ? -122.19 -167.47 26 3 LEU A 73 ? ? 72.48 32.52 27 3 GLN B 936 ? ? -122.28 -89.30 28 3 LEU B 937 ? ? -152.10 14.97 29 3 VAL B 956 ? ? 67.60 156.60 30 3 ALA B 958 ? ? -152.03 51.13 31 3 VAL B 973 ? ? 52.04 -27.55 32 3 ASN B 974 ? ? -151.66 65.17 33 3 VAL B 988 ? ? -69.59 7.88 34 3 ALA B 1008 ? ? 51.53 16.08 35 3 PRO B 1010 ? ? -52.06 100.81 36 3 GLN B 1014 ? ? -144.48 -18.14 37 3 GLN B 1037 ? ? -65.67 0.56 38 4 ALA A 46 ? ? 38.01 41.28 39 4 GLN A 62 ? ? -119.74 -161.96 40 4 ARG A 74 ? ? 66.51 -47.35 41 4 LEU B 937 ? ? -170.71 -50.81 42 4 CYS B 957 ? ? 39.95 57.16 43 4 GLU B 963 ? ? -143.48 11.86 44 4 PRO B 972 ? ? -76.95 24.07 45 4 GLN B 996 ? ? 57.57 -175.21 46 4 ALA B 1008 ? ? 46.71 25.29 47 4 PRO B 1010 ? ? -55.23 107.01 48 5 ALA A 46 ? ? 38.98 40.18 49 5 GLN A 62 ? ? -120.24 -167.14 50 5 CYS B 957 ? ? 48.26 -151.37 51 5 ILE B 1004 ? ? 56.00 -20.53 52 5 ALA B 1008 ? ? 48.56 22.45 53 5 PRO B 1010 ? ? -49.79 97.47 54 5 GLN B 1014 ? ? -144.73 -12.02 55 6 ALA A 46 ? ? 39.11 40.98 56 6 GLN A 62 ? ? -119.45 -162.93 57 6 SER B 964 ? ? 37.24 47.53 58 6 ASP B 967 ? ? -145.90 55.38 59 6 LYS B 968 ? ? -77.50 46.95 60 6 VAL B 973 ? ? 45.76 28.92 61 6 ASN B 1005 ? ? -143.76 31.77 62 6 ALA B 1008 ? ? 52.04 14.27 63 6 PRO B 1010 ? ? -46.54 95.29 64 6 GLN B 1014 ? ? -142.69 -25.24 65 7 ALA A 46 ? ? 38.38 41.15 66 7 GLN A 62 ? ? -119.34 -161.88 67 7 LYS B 968 ? ? -156.21 -37.62 68 7 VAL B 973 ? ? 71.77 -38.35 69 7 SER B 998 ? ? -147.49 -7.52 70 7 ASN B 999 ? ? -154.45 60.17 71 7 ALA B 1008 ? ? 52.86 13.48 72 7 PRO B 1010 ? ? -49.50 101.62 73 8 ALA A 46 ? ? 36.87 41.59 74 8 GLN A 62 ? ? -127.97 -160.58 75 8 VAL B 956 ? ? 22.71 -91.81 76 8 SER B 964 ? ? -73.45 31.04 77 8 ASP B 967 ? ? -149.53 -56.70 78 8 LYS B 968 ? ? -155.56 23.96 79 8 CYS B 976 ? ? -175.14 61.33 80 8 ALA B 1002 ? ? -74.50 42.67 81 8 ASN B 1005 ? ? -142.68 22.09 82 8 ALA B 1008 ? ? 49.65 19.35 83 8 PRO B 1010 ? ? -53.73 106.95 84 8 GLN B 1014 ? ? -142.55 -20.73 85 9 ALA A 46 ? ? 38.21 40.36 86 9 GLN A 62 ? ? -128.89 -165.36 87 9 PRO B 932 ? ? -52.01 -2.38 88 9 ALA B 962 ? ? -143.93 26.07 89 9 GLU B 963 ? ? -88.14 30.02 90 9 ASP B 967 ? ? -90.79 48.54 91 9 SER B 998 ? ? -75.66 39.37 92 9 ALA B 1002 ? ? -141.78 30.82 93 9 ALA B 1008 ? ? 51.33 16.42 94 9 GLN B 1014 ? ? -141.14 -21.82 95 10 ALA A 46 ? ? 36.42 41.28 96 10 GLN A 62 ? ? -119.92 -161.80 97 10 ARG A 74 ? ? 32.75 74.67 98 10 SER B 964 ? ? -73.10 46.16 99 10 ASP B 967 ? ? -149.01 36.43 100 10 ASP B 1001 ? ? -156.18 -44.10 101 10 ILE B 1007 ? ? 51.74 -44.22 102 10 ALA B 1008 ? ? 53.51 14.77 103 10 PRO B 1010 ? ? -55.02 108.65 104 10 GLN B 1014 ? ? -141.46 -13.33 105 11 ALA A 46 ? ? 37.54 40.44 106 11 GLN A 62 ? ? -121.41 -161.74 107 11 ARG A 74 ? ? 52.88 -176.11 108 11 HIS B 965 ? ? -143.22 -20.62 109 11 ASN B 977 ? ? 47.06 -165.16 110 11 ASN B 999 ? ? -138.18 -34.41 111 11 ILE B 1004 ? ? -130.19 -33.83 112 11 PRO B 1010 ? ? -55.09 108.60 113 11 GLN B 1014 ? ? -143.02 -17.81 114 12 ALA A 46 ? ? 37.49 41.61 115 12 GLN A 62 ? ? -119.32 -161.82 116 12 ARG A 74 ? ? 57.73 -58.47 117 12 LEU B 937 ? ? -164.25 -53.58 118 12 ASN B 999 ? ? -141.76 14.95 119 12 ASP B 1001 ? ? -140.70 36.39 120 12 ILE B 1004 ? ? 64.66 -58.96 121 12 ALA B 1008 ? ? 51.43 16.42 122 12 PRO B 1010 ? ? -48.11 99.44 123 12 GLN B 1014 ? ? -143.76 -15.57 124 13 ALA A 46 ? ? 38.39 39.89 125 13 GLN A 62 ? ? -127.18 -163.10 126 13 ARG A 74 ? ? 36.73 54.33 127 13 HIS B 965 ? ? -153.56 -59.54 128 13 ASN B 977 ? ? 65.40 163.86 129 13 VAL B 985 ? ? -154.14 -33.97 130 13 THR B 987 ? ? -136.97 -53.83 131 13 PRO B 1010 ? ? -45.70 97.14 132 13 GLN B 1014 ? ? -145.16 -11.97 133 14 ALA A 46 ? ? 39.58 39.29 134 14 GLN A 62 ? ? -126.55 -166.25 135 14 ARG A 74 ? ? 51.86 -81.15 136 14 MET B -1 ? ? -132.68 -57.29 137 14 GLN B 936 ? ? -49.72 -7.66 138 14 CYS B 957 ? ? 36.47 -111.87 139 14 ALA B 962 ? ? -63.45 -176.80 140 14 LYS B 968 ? ? -55.79 105.58 141 14 LYS B 970 ? ? -150.91 1.96 142 14 ASN B 974 ? ? -92.99 58.19 143 14 ASN B 1005 ? ? 59.29 -46.09 144 14 PRO B 1010 ? ? -43.52 102.43 145 14 GLN B 1014 ? ? -140.21 -21.03 146 15 ALA A 46 ? ? 37.51 40.57 147 15 GLN A 62 ? ? -118.50 -163.10 148 15 GLU B 963 ? ? -149.58 -37.65 149 15 LYS B 969 ? ? -132.09 -37.31 150 15 VAL B 973 ? ? 57.42 -112.91 151 15 ASN B 974 ? ? -57.80 108.08 152 15 CYS B 976 ? ? -141.20 -17.58 153 15 THR B 978 ? ? -147.91 30.05 154 15 VAL B 985 ? ? -142.97 46.93 155 15 PRO B 1010 ? ? -44.61 101.46 156 15 GLN B 1014 ? ? -140.17 -25.77 157 16 ALA A 46 ? ? 39.89 38.80 158 16 GLN A 62 ? ? -119.39 -163.06 159 16 GLU B 963 ? ? -152.72 65.16 160 16 ASP B 967 ? ? -152.15 -52.28 161 16 LYS B 968 ? ? 37.12 71.89 162 16 ASN B 977 ? ? 38.07 -95.48 163 16 THR B 987 ? ? -145.57 22.16 164 16 PRO B 993 ? ? -78.50 32.19 165 16 ASN B 1005 ? ? -149.82 28.83 166 16 PRO B 1010 ? ? -44.95 97.11 167 16 PHE B 1012 ? ? -39.48 -38.35 168 16 GLN B 1014 ? ? -142.33 -20.41 169 16 GLN B 1037 ? ? -65.92 2.66 170 17 ALA A 46 ? ? 38.21 40.15 171 17 GLN A 62 ? ? -119.51 -161.56 172 17 ARG A 74 ? ? 35.18 46.33 173 17 ASP B 967 ? ? -148.88 -41.39 174 17 VAL B 973 ? ? -140.95 29.04 175 17 ALA B 1002 ? ? 54.19 17.48 176 17 ASN B 1005 ? ? 64.25 -35.03 177 17 ALA B 1008 ? ? 51.45 18.48 178 17 GLN B 1014 ? ? -138.97 -34.64 179 18 ALA A 46 ? ? 38.71 40.11 180 18 GLN A 62 ? ? -118.92 -161.61 181 18 GLN B 936 ? ? -135.09 -68.24 182 18 LEU B 937 ? ? -149.46 -61.95 183 18 ASP B 938 ? ? -173.07 -66.66 184 18 CYS B 957 ? ? -67.84 94.56 185 18 ASN B 974 ? ? -141.99 -32.71 186 18 THR B 978 ? ? -141.00 -19.60 187 18 GLU B 997 ? ? -145.18 -3.63 188 18 ALA B 1002 ? ? -146.88 32.63 189 18 PRO B 1010 ? ? -50.04 102.64 190 18 GLN B 1014 ? ? -143.01 -20.01 191 18 GLN B 1037 ? ? -67.81 3.35 192 19 ALA A 46 ? ? 39.15 39.54 193 19 GLN A 62 ? ? -119.95 -161.26 194 19 LEU A 73 ? ? 78.52 34.44 195 19 PRO B 932 ? ? -49.32 150.74 196 19 CYS B 957 ? ? -152.56 13.11 197 19 GLN B 961 ? ? 65.27 -18.73 198 19 VAL B 973 ? ? 67.90 -64.00 199 19 ASN B 974 ? ? -144.45 -38.86 200 19 THR B 987 ? ? -141.38 -61.26 201 19 SER B 1000 ? ? 58.65 -18.97 202 19 PRO B 1010 ? ? -49.88 102.89 203 19 GLN B 1014 ? ? -141.45 -19.92 204 20 GLN A 62 ? ? -117.09 -163.82 205 20 GLN B 955 ? ? 104.97 128.33 206 20 ASP B 967 ? ? -143.88 -34.90 207 20 ASN B 977 ? ? 56.88 -67.15 208 20 THR B 978 ? ? -142.49 -13.11 209 20 ILE B 980 ? ? -156.21 -44.13 210 20 ALA B 1002 ? ? -145.85 28.85 211 20 ALA B 1008 ? ? 56.12 14.89 212 20 PRO B 1010 ? ? -50.33 101.06 213 20 GLN B 1014 ? ? -144.09 -12.95 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 6 ARG A 42 ? ? 0.087 'SIDE CHAIN' 2 16 ARG A 42 ? ? 0.095 'SIDE CHAIN' 3 20 ARG A 42 ? ? 0.075 'SIDE CHAIN' # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Cancer Institute (NIH/NCI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number CA132878 _pdbx_audit_support.ordinal 1 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'isothermal titration calorimetry' _pdbx_struct_assembly_auth_evidence.details ? #