HEADER TRANSFERASE 29-MAY-17 5VZV TITLE TRIM23 RING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE TRIM23; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RING DOMAIN (UNP RESIDUES 1-123); COMPND 5 SYNONYM: ADP-RIBOSYLATION FACTOR DOMAIN-CONTAINING PROTEIN 1, GTP- COMPND 6 BINDING PROTEIN ARD-1, RING FINGER PROTEIN 46, RING-TYPE E3 UBIQUITIN COMPND 7 TRANSFERASE TRIM23, TRIPARTITE MOTIF-CONTAINING PROTEIN 23; COMPND 8 EC: 2.3.2.27; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRIM23, ARD1, ARFD1, RNF46; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RING DOMAIN, E3 LIGASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR O.PORNILLOS,D.DAWIDZIAK REVDAT 5 03-APR-24 5VZV 1 REMARK REVDAT 4 13-MAR-24 5VZV 1 REMARK REVDAT 3 01-JAN-20 5VZV 1 REMARK REVDAT 2 20-SEP-17 5VZV 1 JRNL REVDAT 1 09-AUG-17 5VZV 0 JRNL AUTH D.M.DAWIDZIAK,J.G.SANCHEZ,J.M.WAGNER,B.K.GANSER-PORNILLOS, JRNL AUTH 2 O.PORNILLOS JRNL TITL STRUCTURE AND CATALYTIC ACTIVATION OF THE TRIM23 RING E3 JRNL TITL 2 UBIQUITIN LIGASE. JRNL REF PROTEINS V. 85 1957 2017 JRNL REFN ESSN 1097-0134 JRNL PMID 28681414 JRNL DOI 10.1002/PROT.25348 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 75.1 REMARK 3 NUMBER OF REFLECTIONS : 20670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.670 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.5675 - 4.3659 0.98 1873 200 0.1838 0.2033 REMARK 3 2 4.3659 - 3.4660 1.00 1815 195 0.1637 0.2099 REMARK 3 3 3.4660 - 3.0281 1.00 1777 189 0.1852 0.2403 REMARK 3 4 3.0281 - 2.7513 1.00 1788 192 0.1895 0.2047 REMARK 3 5 2.7513 - 2.5542 1.00 1777 190 0.1917 0.2432 REMARK 3 6 2.5542 - 2.4036 1.00 1760 188 0.1789 0.2070 REMARK 3 7 2.4036 - 2.2832 0.98 1731 187 0.1816 0.2486 REMARK 3 8 2.2832 - 2.1839 0.91 1605 172 0.1998 0.2293 REMARK 3 9 2.1839 - 2.0998 0.80 1430 152 0.2066 0.1991 REMARK 3 10 2.0998 - 2.0273 0.68 1194 129 0.2050 0.2237 REMARK 3 11 2.0273 - 1.9639 0.52 897 96 0.2164 0.2407 REMARK 3 12 1.9639 - 1.9078 0.33 581 62 0.2216 0.2553 REMARK 3 13 1.9078 - 1.8576 0.20 343 36 0.2583 0.3467 REMARK 3 14 1.8576 - 1.8123 0.06 100 11 0.2880 0.2845 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1784 REMARK 3 ANGLE : 0.697 2413 REMARK 3 CHIRALITY : 0.046 284 REMARK 3 PLANARITY : 0.004 311 REMARK 3 DIHEDRAL : 18.215 1072 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VZV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228068. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24900 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 45.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.96000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.11.1_2575 REMARK 200 STARTING MODEL: HOMOLOGY MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.5, 25% W/V PEG3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.71350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 22.71350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.85850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 71.23200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.85850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 71.23200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.71350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.85850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 71.23200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 22.71350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.85850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 71.23200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 45.42700 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 LEU A 4 REMARK 465 VAL A 5 REMARK 465 VAL A 6 REMARK 465 ASN A 7 REMARK 465 LYS A 8 REMARK 465 LEU A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 GLY A 12 REMARK 465 VAL A 13 REMARK 465 ASP A 14 REMARK 465 SER A 15 REMARK 465 GLY A 16 REMARK 465 ARG A 17 REMARK 465 GLN A 18 REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 ARG A 21 REMARK 465 GLY A 22 REMARK 465 THR A 23 REMARK 465 ALA A 24 REMARK 465 VAL A 25 REMARK 465 VAL A 26 REMARK 465 LYS A 27 REMARK 465 GLY A 105 REMARK 465 PRO A 106 REMARK 465 ILE A 107 REMARK 465 GLY A 108 REMARK 465 GLN A 109 REMARK 465 TYR A 110 REMARK 465 GLY A 111 REMARK 465 ALA A 112 REMARK 465 ALA A 113 REMARK 465 GLU A 114 REMARK 465 GLU A 115 REMARK 465 SER A 116 REMARK 465 ILE A 117 REMARK 465 GLY A 118 REMARK 465 ILE A 119 REMARK 465 SER A 120 REMARK 465 GLY A 121 REMARK 465 GLU A 122 REMARK 465 SER A 123 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 LEU B 4 REMARK 465 VAL B 5 REMARK 465 VAL B 6 REMARK 465 ASN B 7 REMARK 465 LYS B 8 REMARK 465 LEU B 9 REMARK 465 GLY B 10 REMARK 465 ALA B 11 REMARK 465 GLY B 12 REMARK 465 VAL B 13 REMARK 465 ASP B 14 REMARK 465 SER B 15 REMARK 465 GLY B 16 REMARK 465 ARG B 17 REMARK 465 GLN B 18 REMARK 465 GLY B 19 REMARK 465 SER B 20 REMARK 465 ARG B 21 REMARK 465 GLY B 22 REMARK 465 THR B 23 REMARK 465 ALA B 24 REMARK 465 VAL B 25 REMARK 465 VAL B 26 REMARK 465 LYS B 27 REMARK 465 ASN B 104 REMARK 465 GLY B 105 REMARK 465 PRO B 106 REMARK 465 ILE B 107 REMARK 465 GLY B 108 REMARK 465 GLN B 109 REMARK 465 TYR B 110 REMARK 465 GLY B 111 REMARK 465 ALA B 112 REMARK 465 ALA B 113 REMARK 465 GLU B 114 REMARK 465 GLU B 115 REMARK 465 SER B 116 REMARK 465 ILE B 117 REMARK 465 GLY B 118 REMARK 465 ILE B 119 REMARK 465 SER B 120 REMARK 465 GLY B 121 REMARK 465 GLU B 122 REMARK 465 SER B 123 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 THR C 3 REMARK 465 LEU C 4 REMARK 465 VAL C 5 REMARK 465 VAL C 6 REMARK 465 ASN C 7 REMARK 465 LYS C 8 REMARK 465 LEU C 9 REMARK 465 GLY C 10 REMARK 465 ALA C 11 REMARK 465 GLY C 12 REMARK 465 VAL C 13 REMARK 465 ASP C 14 REMARK 465 SER C 15 REMARK 465 GLY C 16 REMARK 465 ARG C 17 REMARK 465 GLN C 18 REMARK 465 GLY C 19 REMARK 465 SER C 20 REMARK 465 ARG C 21 REMARK 465 GLY C 22 REMARK 465 THR C 23 REMARK 465 ALA C 24 REMARK 465 VAL C 25 REMARK 465 VAL C 26 REMARK 465 LYS C 27 REMARK 465 GLY C 105 REMARK 465 PRO C 106 REMARK 465 ILE C 107 REMARK 465 GLY C 108 REMARK 465 GLN C 109 REMARK 465 TYR C 110 REMARK 465 GLY C 111 REMARK 465 ALA C 112 REMARK 465 ALA C 113 REMARK 465 GLU C 114 REMARK 465 GLU C 115 REMARK 465 SER C 116 REMARK 465 ILE C 117 REMARK 465 GLY C 118 REMARK 465 ILE C 119 REMARK 465 SER C 120 REMARK 465 GLY C 121 REMARK 465 GLU C 122 REMARK 465 SER C 123 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 28 CG1 CG2 REMARK 470 HIS A 66 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 68 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 28 CG1 CG2 REMARK 470 GLN B 41 CG CD OE1 NE2 REMARK 470 LEU B 65 CG CD1 CD2 REMARK 470 HIS B 66 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 76 CD NE CZ NH1 NH2 REMARK 470 ASP B 83 CG OD1 OD2 REMARK 470 GLN B 103 CG CD OE1 NE2 REMARK 470 ASN C 104 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 358 O HOH C 371 3556 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 33 -60.81 -91.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 31 SG REMARK 620 2 CYS A 34 SG 108.6 REMARK 620 3 CYS A 56 SG 111.3 112.7 REMARK 620 4 CYS A 59 SG 118.6 101.9 103.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 51 SG REMARK 620 2 HIS A 53 ND1 113.3 REMARK 620 3 CYS A 72 SG 109.0 109.7 REMARK 620 4 ASP A 75 OD2 123.4 89.0 110.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 31 SG REMARK 620 2 CYS B 34 SG 106.9 REMARK 620 3 CYS B 56 SG 114.9 113.9 REMARK 620 4 CYS B 59 SG 117.9 104.8 98.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 51 SG REMARK 620 2 HIS B 53 ND1 116.1 REMARK 620 3 CYS B 72 SG 110.2 109.1 REMARK 620 4 ASP B 75 OD2 119.7 89.3 110.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 31 SG REMARK 620 2 CYS C 34 SG 108.1 REMARK 620 3 CYS C 56 SG 115.2 111.8 REMARK 620 4 CYS C 59 SG 115.4 103.3 102.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 51 SG REMARK 620 2 HIS C 53 ND1 115.3 REMARK 620 3 CYS C 72 SG 113.2 105.9 REMARK 620 4 ASP C 75 OD2 115.8 92.0 112.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 202 DBREF 5VZV A 1 123 UNP P36406 TRI23_HUMAN 1 123 DBREF 5VZV B 1 123 UNP P36406 TRI23_HUMAN 1 123 DBREF 5VZV C 1 123 UNP P36406 TRI23_HUMAN 1 123 SEQRES 1 A 123 MET ALA THR LEU VAL VAL ASN LYS LEU GLY ALA GLY VAL SEQRES 2 A 123 ASP SER GLY ARG GLN GLY SER ARG GLY THR ALA VAL VAL SEQRES 3 A 123 LYS VAL LEU GLU CYS GLY VAL CYS GLU ASP VAL PHE SER SEQRES 4 A 123 LEU GLN GLY ASP LYS VAL PRO ARG LEU LEU LEU CYS GLY SEQRES 5 A 123 HIS THR VAL CYS HIS ASP CYS LEU THR ARG LEU PRO LEU SEQRES 6 A 123 HIS GLY ARG ALA ILE ARG CYS PRO PHE ASP ARG GLN VAL SEQRES 7 A 123 THR ASP LEU GLY ASP SER GLY VAL TRP GLY LEU LYS LYS SEQRES 8 A 123 ASN PHE ALA LEU LEU GLU LEU LEU GLU ARG LEU GLN ASN SEQRES 9 A 123 GLY PRO ILE GLY GLN TYR GLY ALA ALA GLU GLU SER ILE SEQRES 10 A 123 GLY ILE SER GLY GLU SER SEQRES 1 B 123 MET ALA THR LEU VAL VAL ASN LYS LEU GLY ALA GLY VAL SEQRES 2 B 123 ASP SER GLY ARG GLN GLY SER ARG GLY THR ALA VAL VAL SEQRES 3 B 123 LYS VAL LEU GLU CYS GLY VAL CYS GLU ASP VAL PHE SER SEQRES 4 B 123 LEU GLN GLY ASP LYS VAL PRO ARG LEU LEU LEU CYS GLY SEQRES 5 B 123 HIS THR VAL CYS HIS ASP CYS LEU THR ARG LEU PRO LEU SEQRES 6 B 123 HIS GLY ARG ALA ILE ARG CYS PRO PHE ASP ARG GLN VAL SEQRES 7 B 123 THR ASP LEU GLY ASP SER GLY VAL TRP GLY LEU LYS LYS SEQRES 8 B 123 ASN PHE ALA LEU LEU GLU LEU LEU GLU ARG LEU GLN ASN SEQRES 9 B 123 GLY PRO ILE GLY GLN TYR GLY ALA ALA GLU GLU SER ILE SEQRES 10 B 123 GLY ILE SER GLY GLU SER SEQRES 1 C 123 MET ALA THR LEU VAL VAL ASN LYS LEU GLY ALA GLY VAL SEQRES 2 C 123 ASP SER GLY ARG GLN GLY SER ARG GLY THR ALA VAL VAL SEQRES 3 C 123 LYS VAL LEU GLU CYS GLY VAL CYS GLU ASP VAL PHE SER SEQRES 4 C 123 LEU GLN GLY ASP LYS VAL PRO ARG LEU LEU LEU CYS GLY SEQRES 5 C 123 HIS THR VAL CYS HIS ASP CYS LEU THR ARG LEU PRO LEU SEQRES 6 C 123 HIS GLY ARG ALA ILE ARG CYS PRO PHE ASP ARG GLN VAL SEQRES 7 C 123 THR ASP LEU GLY ASP SER GLY VAL TRP GLY LEU LYS LYS SEQRES 8 C 123 ASN PHE ALA LEU LEU GLU LEU LEU GLU ARG LEU GLN ASN SEQRES 9 C 123 GLY PRO ILE GLY GLN TYR GLY ALA ALA GLU GLU SER ILE SEQRES 10 C 123 GLY ILE SER GLY GLU SER HET ZN A 201 1 HET ZN A 202 1 HET ZN B 201 1 HET ZN B 202 1 HET ZN C 201 1 HET ZN C 202 1 HETNAM ZN ZINC ION FORMUL 4 ZN 6(ZN 2+) FORMUL 10 HOH *163(H2 O) HELIX 1 AA1 HIS A 57 LEU A 63 1 7 HELIX 2 AA2 SER A 84 LEU A 89 5 6 HELIX 3 AA3 ASN A 92 ASN A 104 1 13 HELIX 4 AA4 HIS B 57 ARG B 62 1 6 HELIX 5 AA5 SER B 84 LEU B 89 5 6 HELIX 6 AA6 ASN B 92 GLN B 103 1 12 HELIX 7 AA7 HIS C 57 LEU C 63 1 7 HELIX 8 AA8 SER C 84 LEU C 89 5 6 HELIX 9 AA9 ASN C 92 ASN C 104 1 13 SHEET 1 AA1 2 PRO A 46 LEU A 48 0 SHEET 2 AA1 2 THR A 54 CYS A 56 -1 O VAL A 55 N ARG A 47 SHEET 1 AA2 3 LEU A 65 HIS A 66 0 SHEET 2 AA2 3 ALA A 69 ARG A 71 -1 O ALA A 69 N HIS A 66 SHEET 3 AA2 3 VAL A 78 ASP A 80 -1 O THR A 79 N ILE A 70 SHEET 1 AA3 2 PRO B 46 LEU B 48 0 SHEET 2 AA3 2 THR B 54 CYS B 56 -1 O VAL B 55 N ARG B 47 SHEET 1 AA4 2 ALA B 69 ARG B 71 0 SHEET 2 AA4 2 VAL B 78 ASP B 80 -1 O THR B 79 N ILE B 70 SHEET 1 AA5 2 PRO C 46 LEU C 48 0 SHEET 2 AA5 2 THR C 54 CYS C 56 -1 O VAL C 55 N ARG C 47 SHEET 1 AA6 2 ALA C 69 ARG C 71 0 SHEET 2 AA6 2 VAL C 78 ASP C 80 -1 O THR C 79 N ILE C 70 LINK SG CYS A 31 ZN ZN A 201 1555 1555 2.39 LINK SG CYS A 34 ZN ZN A 201 1555 1555 2.38 LINK SG CYS A 51 ZN ZN A 202 1555 1555 2.25 LINK ND1 HIS A 53 ZN ZN A 202 1555 1555 2.05 LINK SG CYS A 56 ZN ZN A 201 1555 1555 2.29 LINK SG CYS A 59 ZN ZN A 201 1555 1555 2.23 LINK SG CYS A 72 ZN ZN A 202 1555 1555 2.15 LINK OD2 ASP A 75 ZN ZN A 202 1555 1555 2.09 LINK SG CYS B 31 ZN ZN B 201 1555 1555 2.46 LINK SG CYS B 34 ZN ZN B 201 1555 1555 2.33 LINK SG CYS B 51 ZN ZN B 202 1555 1555 2.26 LINK ND1 HIS B 53 ZN ZN B 202 1555 1555 1.98 LINK SG CYS B 56 ZN ZN B 201 1555 1555 2.31 LINK SG CYS B 59 ZN ZN B 201 1555 1555 2.21 LINK SG CYS B 72 ZN ZN B 202 1555 1555 2.30 LINK OD2 ASP B 75 ZN ZN B 202 1555 1555 2.02 LINK SG CYS C 31 ZN ZN C 201 1555 1555 2.31 LINK SG CYS C 34 ZN ZN C 201 1555 1555 2.39 LINK SG CYS C 51 ZN ZN C 202 1555 1555 2.26 LINK ND1 HIS C 53 ZN ZN C 202 1555 1555 2.00 LINK SG CYS C 56 ZN ZN C 201 1555 1555 2.31 LINK SG CYS C 59 ZN ZN C 201 1555 1555 2.28 LINK SG CYS C 72 ZN ZN C 202 1555 1555 2.18 LINK OD2 ASP C 75 ZN ZN C 202 1555 1555 2.03 SITE 1 AC1 4 CYS A 31 CYS A 34 CYS A 56 CYS A 59 SITE 1 AC2 4 CYS A 51 HIS A 53 CYS A 72 ASP A 75 SITE 1 AC3 4 CYS B 31 CYS B 34 CYS B 56 CYS B 59 SITE 1 AC4 4 CYS B 51 HIS B 53 CYS B 72 ASP B 75 SITE 1 AC5 4 CYS C 31 CYS C 34 CYS C 56 CYS C 59 SITE 1 AC6 4 CYS C 51 HIS C 53 CYS C 72 ASP C 75 CRYST1 91.717 142.464 45.427 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010903 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007019 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022013 0.00000