HEADER CELL ADHESION 02-JUN-17 5W1D TITLE CRYSTAL STRUCTURE OF MOUSE PROTOCADHERIN-15 EC4-7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTOCADHERIN-15; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 401-818; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PCDH15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS HEARING, MECHANOTRANSDUCTION, ADHESION, CALCIUM-BINDING PROTEIN, CELL KEYWDS 2 ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR C.F.KLANSECK,B.L.NEEL,M.SOTOMAYOR REVDAT 4 04-OCT-23 5W1D 1 REMARK REVDAT 3 07-OCT-20 5W1D 1 JRNL LINK REVDAT 2 11-DEC-19 5W1D 1 REMARK REVDAT 1 06-JUN-18 5W1D 0 JRNL AUTH D.CHOUDHARY,Y.NARUI,B.L.NEEL,L.N.WIMALASENA,C.F.KLANSECK, JRNL AUTH 2 P.DE-LA-TORRE,C.CHEN,R.ARAYA-SECCHI,E.TAMILSELVAN, JRNL AUTH 3 M.SOTOMAYOR JRNL TITL STRUCTURAL DETERMINANTS OF PROTOCADHERIN-15 MECHANICS AND JRNL TITL 2 FUNCTION IN HEARING AND BALANCE PERCEPTION. JRNL REF PROC.NATL.ACAD.SCI.USA 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32963095 JRNL DOI 10.1073/PNAS.1920444117 REMARK 2 REMARK 2 RESOLUTION. 3.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 13124 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 648 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 847 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.3920 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.4400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3118 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 120.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.58000 REMARK 3 B22 (A**2) : 9.58000 REMARK 3 B33 (A**2) : -19.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.744 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.466 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.372 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 56.847 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3178 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2895 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4352 ; 1.620 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6717 ; 1.021 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 403 ; 7.721 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;38.838 ;24.863 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 491 ;17.981 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;19.417 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 522 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3572 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 603 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1618 ; 2.744 ; 8.443 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1617 ; 2.743 ; 8.443 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2019 ; 4.478 ;12.664 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2020 ; 4.478 ;12.665 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1560 ; 2.645 ; 8.680 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1561 ; 2.644 ; 8.680 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2334 ; 4.507 ;12.934 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6281 ; 7.047 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6282 ; 7.047 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 370 A 480 REMARK 3 RESIDUE RANGE : A 1 A 1007 REMARK 3 ORIGIN FOR THE GROUP (A): -56.2622 -27.3755 55.3939 REMARK 3 T TENSOR REMARK 3 T11: 0.1270 T22: 0.6173 REMARK 3 T33: 0.4360 T12: -0.1241 REMARK 3 T13: 0.0613 T23: -0.1007 REMARK 3 L TENSOR REMARK 3 L11: 2.9388 L22: 6.2742 REMARK 3 L33: 7.4539 L12: -0.4941 REMARK 3 L13: 1.4426 L23: 1.6082 REMARK 3 S TENSOR REMARK 3 S11: 0.1835 S12: -0.5288 S13: 0.1352 REMARK 3 S21: 0.6863 S22: -0.1966 S23: -0.2378 REMARK 3 S31: 0.0057 S32: -0.3421 S33: 0.0131 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 481 A 588 REMARK 3 RESIDUE RANGE : A 1005 A 1006 REMARK 3 ORIGIN FOR THE GROUP (A): -53.7144 -36.6795 14.3679 REMARK 3 T TENSOR REMARK 3 T11: 0.0144 T22: 0.1359 REMARK 3 T33: 0.4201 T12: -0.0036 REMARK 3 T13: 0.0254 T23: -0.1103 REMARK 3 L TENSOR REMARK 3 L11: 2.3412 L22: 1.7402 REMARK 3 L33: 8.5971 L12: -0.2661 REMARK 3 L13: -1.9730 L23: 0.8244 REMARK 3 S TENSOR REMARK 3 S11: 0.1539 S12: -0.0933 S13: -0.0620 REMARK 3 S21: -0.0320 S22: -0.1454 S23: -0.1748 REMARK 3 S31: -0.0481 S32: 0.0865 S33: -0.0085 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 589 A 689 REMARK 3 RESIDUE RANGE : A 1002 A 1004 REMARK 3 ORIGIN FOR THE GROUP (A): -40.1265 -37.2517 -32.4956 REMARK 3 T TENSOR REMARK 3 T11: 0.3483 T22: 0.1805 REMARK 3 T33: 0.5478 T12: 0.0685 REMARK 3 T13: 0.0273 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 4.2790 L22: 0.3499 REMARK 3 L33: 7.6233 L12: 0.7253 REMARK 3 L13: -5.0733 L23: -0.8617 REMARK 3 S TENSOR REMARK 3 S11: 0.0833 S12: 0.0909 S13: 0.2453 REMARK 3 S21: -0.1817 S22: 0.0821 S23: 0.0788 REMARK 3 S31: -0.5098 S32: -0.6135 S33: -0.1655 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 690 A 791 REMARK 3 RESIDUE RANGE : A 1001 A 1001 REMARK 3 ORIGIN FOR THE GROUP (A): -3.8339 -32.2577 -65.0113 REMARK 3 T TENSOR REMARK 3 T11: 0.5789 T22: 0.2701 REMARK 3 T33: 0.5855 T12: 0.0379 REMARK 3 T13: 0.1968 T23: -0.0414 REMARK 3 L TENSOR REMARK 3 L11: 6.4486 L22: 2.6469 REMARK 3 L33: 3.5615 L12: 1.5458 REMARK 3 L13: -2.2966 L23: 0.1987 REMARK 3 S TENSOR REMARK 3 S11: -0.2809 S12: 1.0522 S13: -0.3925 REMARK 3 S21: -0.4697 S22: 0.2485 S23: -0.5466 REMARK 3 S31: 0.5078 S32: 0.1143 S33: 0.0324 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5W1D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228202. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14064 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.350 REMARK 200 RESOLUTION RANGE LOW (A) : 76.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.60100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5T4M, 5TPK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5 2.0 M MGAC 23% PEG REMARK 280 400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 144.73450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.43150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.43150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 217.10175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.43150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.43150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.36725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.43150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.43150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 217.10175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.43150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.43150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 72.36725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 144.73450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 372 REMARK 465 ALA A 373 REMARK 465 SER A 374 REMARK 465 THR A 375 REMARK 465 MET A 376 REMARK 465 ASP A 409 REMARK 465 LYS A 410 REMARK 465 ASP A 411 REMARK 465 ILE A 412 REMARK 465 GLU A 413 REMARK 465 ASP A 414 REMARK 465 THR A 415 REMARK 465 LYS A 416 REMARK 465 ASP A 417 REMARK 465 PRO A 418 REMARK 465 ASP A 792 REMARK 465 LEU A 793 REMARK 465 GLU A 794 REMARK 465 HIS A 795 REMARK 465 HIS A 796 REMARK 465 HIS A 797 REMARK 465 HIS A 798 REMARK 465 HIS A 799 REMARK 465 HIS A 800 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 398 -17.93 -47.48 REMARK 500 GLN A 453 68.77 75.08 REMARK 500 THR A 455 86.03 -151.70 REMARK 500 ASP A 464 16.58 -151.66 REMARK 500 VAL A 507 -62.84 -101.98 REMARK 500 ASN A 520 0.53 -61.66 REMARK 500 GLU A 551 73.72 44.88 REMARK 500 GLU A 572 76.52 -113.97 REMARK 500 ASN A 588 16.43 57.68 REMARK 500 GLU A 606 -33.23 -39.65 REMARK 500 LEU A 615 125.94 -173.07 REMARK 500 LEU A 617 79.19 -103.11 REMARK 500 ARG A 638 50.22 31.48 REMARK 500 SER A 659 -76.91 -78.85 REMARK 500 ARG A 662 123.18 -177.77 REMARK 500 ASP A 724 -178.80 -63.73 REMARK 500 LEU A 789 -168.32 -102.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1007 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 385 OE2 REMARK 620 2 ASP A 480 OD1 85.3 REMARK 620 3 ASP A 480 OD2 121.9 43.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1005 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 482 OD1 REMARK 620 2 ASN A 484 O 94.6 REMARK 620 3 ASP A 514 OD1 162.9 91.5 REMARK 620 4 ASP A 514 OD2 145.0 72.9 52.1 REMARK 620 5 ASN A 520 O 88.9 169.4 88.0 98.6 REMARK 620 6 ASP A 566 OD2 77.8 81.6 119.0 68.2 89.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1006 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 516 OD1 REMARK 620 2 GLU A 517 OE1 89.7 REMARK 620 3 GLU A 517 OE2 99.6 42.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 590 OE1 REMARK 620 2 SER A 591 O 72.1 REMARK 620 3 ASP A 621 OD1 141.9 111.5 REMARK 620 4 ASP A 621 OD2 126.9 159.5 49.5 REMARK 620 5 GLU A 623 OE1 91.5 90.8 125.5 95.8 REMARK 620 6 ASP A 625 OD2 59.4 127.1 96.0 68.6 109.1 REMARK 620 7 ASP A 671 OD1 83.3 75.8 62.5 97.2 166.6 78.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 606 OE2 REMARK 620 2 GLU A 658 OE1 81.2 REMARK 620 3 ASP A 688 OD1 74.7 120.7 REMARK 620 4 VAL A 689 O 73.3 141.6 79.8 REMARK 620 5 ASP A 691 OD1 92.6 68.6 161.9 84.2 REMARK 620 6 ASP A 724 OD1 151.7 107.8 119.0 84.4 67.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 606 OE1 REMARK 620 2 ASP A 656 OD1 90.0 REMARK 620 3 GLU A 658 OE1 69.0 88.5 REMARK 620 4 ASP A 691 OD2 74.9 162.3 77.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 690 OD1 REMARK 620 2 ASN A 692 O 87.7 REMARK 620 3 ASP A 722 OD1 145.8 93.8 REMARK 620 4 ASP A 722 OD2 161.8 85.1 51.5 REMARK 620 5 ASP A 724 OD2 78.3 74.0 69.5 115.4 REMARK 620 6 ASN A 728 O 109.0 157.3 63.7 82.8 94.1 REMARK 620 7 ASP A 772 OD2 68.1 121.8 135.4 101.9 141.1 79.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1007 DBREF 5W1D A 375 792 UNP Q99PJ1 PCD15_MOUSE 401 818 SEQADV 5W1D MET A 372 UNP Q99PJ1 INITIATING METHIONINE SEQADV 5W1D ALA A 373 UNP Q99PJ1 EXPRESSION TAG SEQADV 5W1D SER A 374 UNP Q99PJ1 EXPRESSION TAG SEQADV 5W1D LEU A 793 UNP Q99PJ1 EXPRESSION TAG SEQADV 5W1D GLU A 794 UNP Q99PJ1 EXPRESSION TAG SEQADV 5W1D HIS A 795 UNP Q99PJ1 EXPRESSION TAG SEQADV 5W1D HIS A 796 UNP Q99PJ1 EXPRESSION TAG SEQADV 5W1D HIS A 797 UNP Q99PJ1 EXPRESSION TAG SEQADV 5W1D HIS A 798 UNP Q99PJ1 EXPRESSION TAG SEQADV 5W1D HIS A 799 UNP Q99PJ1 EXPRESSION TAG SEQADV 5W1D HIS A 800 UNP Q99PJ1 EXPRESSION TAG SEQRES 1 A 429 MET ALA SER THR MET PRO SER TYR GLN GLY TYR ILE LEU SEQRES 2 A 429 GLU SER ALA PRO VAL GLY ALA THR ILE SER GLU SER LEU SEQRES 3 A 429 ASN LEU THR THR PRO LEU ARG ILE VAL ALA LEU ASP LYS SEQRES 4 A 429 ASP ILE GLU ASP THR LYS ASP PRO GLU LEU HIS LEU PHE SEQRES 5 A 429 LEU ASN ASP TYR THR SER VAL PHE THR VAL THR PRO THR SEQRES 6 A 429 GLY ILE THR ARG TYR LEU THR LEU LEU GLN PRO VAL ASP SEQRES 7 A 429 ARG GLU GLU GLN GLN THR TYR THR PHE LEU ILE THR ALA SEQRES 8 A 429 PHE ASP GLY VAL GLN GLU SER GLU PRO VAL VAL VAL ASN SEQRES 9 A 429 ILE ARG VAL MET ASP ALA ASN ASP ASN THR PRO THR PHE SEQRES 10 A 429 PRO GLU ILE SER TYR ASP VAL TYR VAL TYR THR ASP MET SEQRES 11 A 429 SER PRO GLY ASP SER VAL ILE GLN LEU THR ALA VAL ASP SEQRES 12 A 429 ALA ASP GLU GLY SER ASN GLY GLU ILE SER TYR GLU ILE SEQRES 13 A 429 LEU VAL GLY GLY LYS GLY ASP PHE VAL ILE ASN LYS THR SEQRES 14 A 429 THR GLY LEU VAL SER ILE ALA PRO GLY VAL GLU LEU ILE SEQRES 15 A 429 VAL GLY GLN THR TYR ALA LEU THR VAL GLN ALA SER ASP SEQRES 16 A 429 ASN ALA PRO PRO ALA GLU ARG ARG HIS SER ILE CYS THR SEQRES 17 A 429 VAL TYR ILE GLU VAL LEU PRO PRO ASN ASN GLN SER PRO SEQRES 18 A 429 PRO ARG PHE PRO GLN LEU MET TYR SER LEU GLU VAL SER SEQRES 19 A 429 GLU ALA MET ARG ILE GLY ALA ILE LEU LEU ASN LEU GLN SEQRES 20 A 429 ALA THR ASP ARG GLU GLY ASP PRO ILE THR TYR ALA ILE SEQRES 21 A 429 GLU ASN GLY ASP PRO GLN ARG VAL PHE ASN LEU SER GLU SEQRES 22 A 429 THR THR GLY ILE LEU SER LEU GLY LYS ALA LEU ASP ARG SEQRES 23 A 429 GLU SER THR ASP ARG TYR ILE LEU ILE VAL THR ALA SER SEQRES 24 A 429 ASP GLY ARG PRO ASP GLY THR SER THR ALA THR VAL ASN SEQRES 25 A 429 ILE VAL VAL THR ASP VAL ASN ASP ASN ALA PRO VAL PHE SEQRES 26 A 429 ASP PRO TYR LEU PRO ARG ASN LEU SER VAL VAL GLU GLU SEQRES 27 A 429 GLU ALA ASN ALA PHE VAL GLY GLN VAL ARG ALA THR ASP SEQRES 28 A 429 PRO ASP ALA GLY ILE ASN GLY GLN VAL HIS TYR SER LEU SEQRES 29 A 429 GLY ASN PHE ASN ASN LEU PHE ARG ILE THR SER ASN GLY SEQRES 30 A 429 SER ILE TYR THR ALA VAL LYS LEU ASN ARG GLU ALA ARG SEQRES 31 A 429 ASP HIS TYR GLU LEU VAL VAL VAL ALA THR ASP GLY ALA SEQRES 32 A 429 VAL HIS PRO ARG HIS SER THR LEU THR LEU TYR ILE LYS SEQRES 33 A 429 VAL LEU ASP ILE ASP LEU GLU HIS HIS HIS HIS HIS HIS HET CA A1001 1 HET CA A1002 1 HET CA A1003 1 HET CA A1004 1 HET CA A1005 1 HET K A1006 1 HET CA A1007 1 HETNAM CA CALCIUM ION HETNAM K POTASSIUM ION FORMUL 2 CA 6(CA 2+) FORMUL 7 K K 1+ FORMUL 9 HOH *(H2 O) HELIX 1 AA1 PRO A 586 GLN A 590 5 5 HELIX 2 AA2 ALA A 725 GLY A 729 5 5 SHEET 1 AA1 4 SER A 378 GLN A 380 0 SHEET 2 AA1 4 VAL A 472 ASN A 475 1 O VAL A 473 N TYR A 379 SHEET 3 AA1 4 THR A 457 PHE A 463 -1 N ILE A 460 O VAL A 472 SHEET 4 AA1 4 HIS A 421 LEU A 424 -1 N PHE A 423 O THR A 461 SHEET 1 AA2 2 ILE A 383 LEU A 384 0 SHEET 2 AA2 2 VAL A 478 MET A 479 1 O MET A 479 N ILE A 383 SHEET 1 AA3 2 ILE A 405 VAL A 406 0 SHEET 2 AA3 2 THR A 439 ARG A 440 -1 O ARG A 440 N ILE A 405 SHEET 1 AA4 2 PHE A 431 VAL A 433 0 SHEET 2 AA4 2 LEU A 442 LEU A 444 -1 O THR A 443 N THR A 432 SHEET 1 AA5 4 SER A 492 TYR A 498 0 SHEET 2 AA5 4 HIS A 575 LEU A 585 1 O LEU A 585 N VAL A 497 SHEET 3 AA5 4 THR A 557 ASP A 566 -1 N VAL A 562 O CYS A 578 SHEET 4 AA5 4 ILE A 523 VAL A 529 -1 N SER A 524 O SER A 565 SHEET 1 AA6 3 SER A 506 GLN A 509 0 SHEET 2 AA6 3 LEU A 543 ILE A 546 -1 O VAL A 544 N VAL A 507 SHEET 3 AA6 3 PHE A 535 ILE A 537 -1 N VAL A 536 O SER A 545 SHEET 1 AA7 2 PRO A 593 ARG A 594 0 SHEET 2 AA7 2 THR A 620 ASP A 621 -1 O THR A 620 N ARG A 594 SHEET 1 AA8 3 MET A 599 SER A 601 0 SHEET 2 AA8 3 THR A 677 THR A 687 1 O ASN A 683 N TYR A 600 SHEET 3 AA8 3 VAL A 604 SER A 605 1 N VAL A 604 O THR A 687 SHEET 1 AA9 4 MET A 599 SER A 601 0 SHEET 2 AA9 4 THR A 677 THR A 687 1 O ASN A 683 N TYR A 600 SHEET 3 AA9 4 ARG A 662 SER A 670 -1 N VAL A 667 O ALA A 680 SHEET 4 AA9 4 THR A 628 ASN A 633 -1 N GLU A 632 O ILE A 666 SHEET 1 AB1 3 ILE A 613 ASN A 616 0 SHEET 2 AB1 3 ILE A 648 LEU A 651 -1 O LEU A 649 N LEU A 614 SHEET 3 AB1 3 PHE A 640 LEU A 642 -1 N ASN A 641 O SER A 650 SHEET 1 AB2 2 VAL A 695 PHE A 696 0 SHEET 2 AB2 2 ALA A 720 THR A 721 -1 O THR A 721 N VAL A 695 SHEET 1 AB3 4 ASN A 703 VAL A 706 0 SHEET 2 AB3 4 HIS A 779 VAL A 788 1 O TYR A 785 N LEU A 704 SHEET 3 AB3 4 HIS A 763 ASP A 772 -1 N LEU A 766 O LEU A 784 SHEET 4 AB3 4 VAL A 731 LEU A 735 -1 N SER A 734 O VAL A 769 SHEET 1 AB4 3 PHE A 714 GLN A 717 0 SHEET 2 AB4 3 SER A 749 THR A 752 -1 O ILE A 750 N VAL A 715 SHEET 3 AB4 3 PHE A 742 ILE A 744 -1 N ARG A 743 O TYR A 751 LINK OE2 GLU A 385 CA CA A1007 1555 1555 2.25 LINK OD1 ASP A 480 CA CA A1007 1555 1555 2.70 LINK OD2 ASP A 480 CA CA A1007 1555 1555 3.15 LINK OD1 ASN A 482 CA CA A1005 1555 1555 2.44 LINK O ASN A 484 CA CA A1005 1555 1555 2.37 LINK OD1 ASP A 514 CA CA A1005 1555 1555 2.19 LINK OD2 ASP A 514 CA CA A1005 1555 1555 2.63 LINK OD1 ASP A 516 K K A1006 1555 1555 3.26 LINK OE1 GLU A 517 K K A1006 1555 1555 3.10 LINK OE2 GLU A 517 K K A1006 1555 1555 2.94 LINK O ASN A 520 CA CA A1005 1555 1555 2.09 LINK OD2 ASP A 566 CA CA A1005 1555 1555 2.70 LINK OE1 GLN A 590 CA CA A1004 1555 1555 2.36 LINK O SER A 591 CA CA A1004 1555 1555 2.50 LINK OE2 GLU A 606 CA CA A1002 1555 1555 2.60 LINK OE1 GLU A 606 CA CA A1003 1555 1555 2.49 LINK OD1 ASP A 621 CA CA A1004 1555 1555 2.34 LINK OD2 ASP A 621 CA CA A1004 1555 1555 2.81 LINK OE1 GLU A 623 CA CA A1004 1555 1555 2.21 LINK OD2 ASP A 625 CA CA A1004 1555 1555 2.55 LINK OD1 ASP A 656 CA CA A1003 1555 1555 2.67 LINK OE1 GLU A 658 CA CA A1002 1555 1555 2.40 LINK OE1 GLU A 658 CA CA A1003 1555 1555 2.71 LINK OD1 ASP A 671 CA CA A1004 1555 1555 3.01 LINK OD1 ASP A 688 CA CA A1002 1555 1555 2.02 LINK O VAL A 689 CA CA A1002 1555 1555 2.51 LINK OD1 ASN A 690 CA CA A1001 1555 1555 2.42 LINK OD1 ASP A 691 CA CA A1002 1555 1555 2.70 LINK OD2 ASP A 691 CA CA A1003 1555 1555 2.45 LINK O ASN A 692 CA CA A1001 1555 1555 2.28 LINK OD1 ASP A 722 CA CA A1001 1555 1555 2.40 LINK OD2 ASP A 722 CA CA A1001 1555 1555 2.58 LINK OD2 ASP A 724 CA CA A1001 1555 1555 2.27 LINK OD1 ASP A 724 CA CA A1002 1555 1555 2.31 LINK O ASN A 728 CA CA A1001 1555 1555 2.60 LINK OD2 ASP A 772 CA CA A1001 1555 1555 2.58 SITE 1 AC1 6 ASN A 690 ASN A 692 ASP A 722 ASP A 724 SITE 2 AC1 6 ASN A 728 ASP A 772 SITE 1 AC2 6 GLU A 606 GLU A 658 ASP A 688 VAL A 689 SITE 2 AC2 6 ASP A 691 ASP A 724 SITE 1 AC3 4 GLU A 606 ASP A 656 GLU A 658 ASP A 691 SITE 1 AC4 6 GLN A 590 SER A 591 ASP A 621 GLU A 623 SITE 2 AC4 6 ASP A 625 ASP A 671 SITE 1 AC5 6 ASN A 482 ASN A 484 ASP A 514 ASP A 516 SITE 2 AC5 6 ASN A 520 ASP A 566 SITE 1 AC6 3 ASP A 483 ASP A 516 GLU A 517 SITE 1 AC7 2 GLU A 385 ASP A 480 CRYST1 78.863 78.863 289.469 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012680 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003455 0.00000