HEADER ISOMERASE 04-JUN-17 5W1Q TITLE CRYSTAL STRUCTURE OF ALTERNATE ISOFORM OF GLUTAMATE RACEMASE FROM TITLE 2 HELICOBACTER PYLORI BOUND TO D-GLUTAMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RACEMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.1.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 GENE: MURI, OUM_0701; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RACEMASE, COFACTOR INDEPENDENT, GLUTAMATE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.R.VANCE,M.A.SPIES REVDAT 4 04-OCT-23 5W1Q 1 REMARK REVDAT 3 01-JAN-20 5W1Q 1 REMARK REVDAT 2 13-SEP-17 5W1Q 1 REMARK REVDAT 1 21-JUN-17 5W1Q 0 JRNL AUTH N.R.VANCE,M.A.SPIES JRNL TITL CRYSTAL STRUCTURE OF ALTERNATE ISOFORM OF GLUTAMATE RACEMASE JRNL TITL 2 FROM HELICOBACTER PYLORI BOUND TO D-GLUTAMATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.9091 - 4.8084 1.00 2819 158 0.1860 0.2489 REMARK 3 2 4.8084 - 3.8167 1.00 2734 127 0.1271 0.1861 REMARK 3 3 3.8167 - 3.3343 1.00 2671 143 0.1364 0.1707 REMARK 3 4 3.3343 - 3.0295 1.00 2648 138 0.1491 0.2004 REMARK 3 5 3.0295 - 2.8123 1.00 2641 148 0.1620 0.2034 REMARK 3 6 2.8123 - 2.6465 1.00 2652 140 0.1584 0.2704 REMARK 3 7 2.6465 - 2.5140 1.00 2590 146 0.1638 0.2231 REMARK 3 8 2.5140 - 2.4045 1.00 2625 137 0.1657 0.2351 REMARK 3 9 2.4045 - 2.3120 1.00 2615 137 0.1759 0.2412 REMARK 3 10 2.3120 - 2.2322 1.00 2611 146 0.1907 0.2696 REMARK 3 11 2.2322 - 2.1624 1.00 2605 133 0.1892 0.2439 REMARK 3 12 2.1624 - 2.1006 0.99 2621 123 0.2019 0.3041 REMARK 3 13 2.1006 - 2.0453 1.00 2578 142 0.2244 0.2637 REMARK 3 14 2.0453 - 1.9954 1.00 2597 136 0.2418 0.2494 REMARK 3 15 1.9954 - 1.9500 1.00 2607 135 0.2542 0.3115 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4049 REMARK 3 ANGLE : 1.109 5514 REMARK 3 CHIRALITY : 0.066 645 REMARK 3 PLANARITY : 0.008 697 REMARK 3 DIHEDRAL : 14.369 2391 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5W1Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228288. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.001374 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION MAY 1, 2016 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41793 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 61.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.18700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 1.10800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: PDB ENTRY 2JFY REMARK 200 REMARK 200 REMARK: CUBIC REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS, PH 7.5-8.5, 200 MM REMARK 280 AMMONIUM ACETATE, 20-25% PEG3350, 20% GLYCEROL, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.77750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.99450 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.77750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.99450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 550 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 491 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 594 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 636 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 LEU A 255 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 LEU B 255 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 LYS A 48 CE NZ REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 GLN A 131 CG CD OE1 NE2 REMARK 470 LEU A 135 CG CD1 CD2 REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 470 ILE A 172 CG1 CG2 CD1 REMARK 470 LEU A 173 CG CD1 CD2 REMARK 470 GLN A 189 CG CD OE1 NE2 REMARK 470 GLU A 197 CG CD OE1 OE2 REMARK 470 LEU A 201 CG CD1 CD2 REMARK 470 LYS A 225 CD CE NZ REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 LYS B 59 CD CE NZ REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 LYS B 83 CG CD CE NZ REMARK 470 LYS B 86 CG CD CE NZ REMARK 470 LYS B 101 CE NZ REMARK 470 ASN B 108 CG OD1 ND2 REMARK 470 LYS B 117 CE NZ REMARK 470 LYS B 130 CG CD CE NZ REMARK 470 GLU B 216 CD OE1 OE2 REMARK 470 GLN B 219 CG CD OE1 NE2 REMARK 470 LYS B 221 CE NZ REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 LYS B 226 CG CD CE NZ REMARK 470 LYS B 254 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 33 HH TYR A 39 1.58 REMARK 500 HH21 ARG B 164 O HOH B 407 1.60 REMARK 500 O HOH A 482 O HOH A 564 2.02 REMARK 500 O HOH B 414 O HOH B 563 2.04 REMARK 500 O HOH B 488 O HOH B 626 2.05 REMARK 500 O HOH A 540 O HOH A 578 2.06 REMARK 500 O HOH A 522 O HOH A 602 2.06 REMARK 500 O HOH A 493 O HOH B 412 2.07 REMARK 500 O HOH B 403 O HOH B 604 2.10 REMARK 500 O HOH A 519 O HOH A 560 2.11 REMARK 500 O HOH A 401 O HOH A 518 2.15 REMARK 500 O HOH A 489 O HOH A 559 2.16 REMARK 500 O HOH B 528 O HOH B 595 2.18 REMARK 500 O HOH B 520 O HOH B 584 2.19 REMARK 500 O HOH B 580 O HOH B 622 2.19 REMARK 500 O HOH A 477 O HOH A 562 2.19 REMARK 500 O HOH B 430 O HOH B 598 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 594 O HOH A 594 2545 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 142 66.00 -103.45 REMARK 500 THR B 142 66.09 -113.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DGL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DGL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 304 DBREF 5W1Q A 1 255 UNP K2K6A3 K2K6A3_HELPX 1 255 DBREF 5W1Q B 1 255 UNP K2K6A3 K2K6A3_HELPX 1 255 SEQADV 5W1Q MET A -19 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q GLY A -18 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q SER A -17 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q SER A -16 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q HIS A -15 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q HIS A -14 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q HIS A -13 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q HIS A -12 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q HIS A -11 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q HIS A -10 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q SER A -9 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q SER A -8 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q GLY A -7 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q LEU A -6 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q VAL A -5 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q PRO A -4 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q ARG A -3 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q GLY A -2 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q SER A -1 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q HIS A 0 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q ILE A 24 UNP K2K6A3 LEU 24 CONFLICT SEQADV 5W1Q LYS A 27 UNP K2K6A3 GLU 27 CONFLICT SEQADV 5W1Q LYS A 62 UNP K2K6A3 GLN 62 CONFLICT SEQADV 5W1Q HIS A 84 UNP K2K6A3 TYR 84 CONFLICT SEQADV 5W1Q MET B -19 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q GLY B -18 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q SER B -17 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q SER B -16 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q HIS B -15 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q HIS B -14 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q HIS B -13 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q HIS B -12 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q HIS B -11 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q HIS B -10 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q SER B -9 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q SER B -8 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q GLY B -7 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q LEU B -6 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q VAL B -5 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q PRO B -4 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q ARG B -3 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q GLY B -2 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q SER B -1 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q HIS B 0 UNP K2K6A3 EXPRESSION TAG SEQADV 5W1Q ILE B 24 UNP K2K6A3 LEU 24 CONFLICT SEQADV 5W1Q LYS B 27 UNP K2K6A3 GLU 27 CONFLICT SEQADV 5W1Q LYS B 62 UNP K2K6A3 GLN 62 CONFLICT SEQADV 5W1Q HIS B 84 UNP K2K6A3 TYR 84 CONFLICT SEQRES 1 A 275 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 275 LEU VAL PRO ARG GLY SER HIS MET LYS ILE GLY VAL PHE SEQRES 3 A 275 ASP SER GLY VAL GLY GLY PHE SER VAL LEU LYS SER LEU SEQRES 4 A 275 LEU LYS ALA GLN ILE PHE ASP LYS ILE ILE TYR TYR GLY SEQRES 5 A 275 ASP SER ALA ARG VAL PRO TYR GLY THR LYS ASP PRO THR SEQRES 6 A 275 THR ILE LYS GLN PHE GLY LEU GLU ALA LEU ASP PHE PHE SEQRES 7 A 275 LYS PRO HIS LYS ILE GLU LEU LEU ILE VAL ALA CYS ASN SEQRES 8 A 275 THR ALA SER ALA LEU ALA LEU GLU GLU MET GLN LYS HIS SEQRES 9 A 275 SER LYS ILE PRO ILE VAL GLY VAL ILE GLU PRO SER ILE SEQRES 10 A 275 LEU ALA ILE LYS GLN GLN VAL LYS ASP LYS ASN ALA PRO SEQRES 11 A 275 ILE LEU VAL LEU GLY THR LYS ALA THR ILE GLN SER ASN SEQRES 12 A 275 ALA TYR ASP ASN ALA LEU LYS GLN GLN GLY TYR LEU ASN SEQRES 13 A 275 VAL SER HIS LEU ALA THR SER LEU PHE VAL PRO LEU ILE SEQRES 14 A 275 GLU GLU ASN ILE LEU GLU GLY GLU LEU LEU GLU THR CYS SEQRES 15 A 275 MET ARG TYR TYR PHE THR PRO LEU GLU ILE LEU PRO GLU SEQRES 16 A 275 VAL VAL ILE LEU GLY CYS THR HIS PHE PRO LEU ILE ALA SEQRES 17 A 275 GLN LYS ILE GLU GLY TYR PHE MET GLU HIS PHE ALA LEU SEQRES 18 A 275 SER THR PRO PRO LEU LEU ILE HIS SER GLY ASP ALA ILE SEQRES 19 A 275 VAL GLU TYR LEU GLN GLN LYS TYR THR LEU LYS LYS ASN SEQRES 20 A 275 ALA CYS THR PHE PRO LYS VAL GLU PHE HIS ALA SER GLY SEQRES 21 A 275 ASP VAL VAL TRP LEU GLU LYS GLN ALA LYS GLU TRP LEU SEQRES 22 A 275 LYS LEU SEQRES 1 B 275 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 275 LEU VAL PRO ARG GLY SER HIS MET LYS ILE GLY VAL PHE SEQRES 3 B 275 ASP SER GLY VAL GLY GLY PHE SER VAL LEU LYS SER LEU SEQRES 4 B 275 LEU LYS ALA GLN ILE PHE ASP LYS ILE ILE TYR TYR GLY SEQRES 5 B 275 ASP SER ALA ARG VAL PRO TYR GLY THR LYS ASP PRO THR SEQRES 6 B 275 THR ILE LYS GLN PHE GLY LEU GLU ALA LEU ASP PHE PHE SEQRES 7 B 275 LYS PRO HIS LYS ILE GLU LEU LEU ILE VAL ALA CYS ASN SEQRES 8 B 275 THR ALA SER ALA LEU ALA LEU GLU GLU MET GLN LYS HIS SEQRES 9 B 275 SER LYS ILE PRO ILE VAL GLY VAL ILE GLU PRO SER ILE SEQRES 10 B 275 LEU ALA ILE LYS GLN GLN VAL LYS ASP LYS ASN ALA PRO SEQRES 11 B 275 ILE LEU VAL LEU GLY THR LYS ALA THR ILE GLN SER ASN SEQRES 12 B 275 ALA TYR ASP ASN ALA LEU LYS GLN GLN GLY TYR LEU ASN SEQRES 13 B 275 VAL SER HIS LEU ALA THR SER LEU PHE VAL PRO LEU ILE SEQRES 14 B 275 GLU GLU ASN ILE LEU GLU GLY GLU LEU LEU GLU THR CYS SEQRES 15 B 275 MET ARG TYR TYR PHE THR PRO LEU GLU ILE LEU PRO GLU SEQRES 16 B 275 VAL VAL ILE LEU GLY CYS THR HIS PHE PRO LEU ILE ALA SEQRES 17 B 275 GLN LYS ILE GLU GLY TYR PHE MET GLU HIS PHE ALA LEU SEQRES 18 B 275 SER THR PRO PRO LEU LEU ILE HIS SER GLY ASP ALA ILE SEQRES 19 B 275 VAL GLU TYR LEU GLN GLN LYS TYR THR LEU LYS LYS ASN SEQRES 20 B 275 ALA CYS THR PHE PRO LYS VAL GLU PHE HIS ALA SER GLY SEQRES 21 B 275 ASP VAL VAL TRP LEU GLU LYS GLN ALA LYS GLU TRP LEU SEQRES 22 B 275 LYS LEU HET DGL A 301 17 HET GOL A 302 14 HET GOL A 303 14 HET DGL B 301 17 HET GOL B 302 14 HET GOL B 303 13 HET GOL B 304 14 HETNAM DGL D-GLUTAMIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 DGL 2(C5 H9 N O4) FORMUL 4 GOL 5(C3 H8 O3) FORMUL 10 HOH *449(H2 O) HELIX 1 AA1 GLY A 12 GLN A 23 1 12 HELIX 2 AA2 ASP A 43 LYS A 59 1 17 HELIX 3 AA3 PRO A 60 LYS A 62 5 3 HELIX 4 AA4 CYS A 70 HIS A 84 1 15 HELIX 5 AA5 ILE A 93 VAL A 104 1 12 HELIX 6 AA6 THR A 116 SER A 122 1 7 HELIX 7 AA7 ASN A 123 GLN A 132 1 10 HELIX 8 AA8 LEU A 144 GLU A 151 1 8 HELIX 9 AA9 GLU A 155 THR A 168 1 14 HELIX 10 AB1 HIS A 183 LEU A 186 5 4 HELIX 11 AB2 ILE A 187 ALA A 200 1 14 HELIX 12 AB3 SER A 210 THR A 223 1 14 HELIX 13 AB4 ASP A 241 LYS A 254 1 14 HELIX 14 AB5 GLY B 12 GLN B 23 1 12 HELIX 15 AB6 ASP B 43 LYS B 59 1 17 HELIX 16 AB7 PRO B 60 LYS B 62 5 3 HELIX 17 AB8 CYS B 70 HIS B 84 1 15 HELIX 18 AB9 ILE B 93 VAL B 104 1 12 HELIX 19 AC1 THR B 116 ASN B 123 1 8 HELIX 20 AC2 ASN B 123 GLN B 131 1 9 HELIX 21 AC3 LEU B 144 GLU B 151 1 8 HELIX 22 AC4 GLY B 156 THR B 168 1 13 HELIX 23 AC5 HIS B 183 LEU B 186 5 4 HELIX 24 AC6 ILE B 187 PHE B 199 1 13 HELIX 25 AC7 SER B 210 THR B 223 1 14 HELIX 26 AC8 ASP B 241 LYS B 254 1 14 SHEET 1 AA1 5 ILE A 89 VAL A 90 0 SHEET 2 AA1 5 LEU A 65 VAL A 68 1 N VAL A 68 O VAL A 90 SHEET 3 AA1 5 LYS A 2 ASP A 7 1 N GLY A 4 O ILE A 67 SHEET 4 AA1 5 LYS A 27 GLY A 32 1 O TYR A 31 N VAL A 5 SHEET 5 AA1 5 LYS A 233 ALA A 238 1 O GLU A 235 N TYR A 30 SHEET 1 AA2 4 VAL A 137 ALA A 141 0 SHEET 2 AA2 4 ILE A 111 GLY A 115 1 N ILE A 111 O SER A 138 SHEET 3 AA2 4 VAL A 176 GLY A 180 1 O ILE A 178 N LEU A 112 SHEET 4 AA2 4 LEU A 206 HIS A 209 1 O LEU A 206 N VAL A 177 SHEET 1 AA3 5 ILE B 89 GLY B 91 0 SHEET 2 AA3 5 LEU B 65 VAL B 68 1 N VAL B 68 O VAL B 90 SHEET 3 AA3 5 LYS B 2 ASP B 7 1 N GLY B 4 O ILE B 67 SHEET 4 AA3 5 LYS B 27 GLY B 32 1 O TYR B 31 N VAL B 5 SHEET 5 AA3 5 LYS B 233 ALA B 238 1 O GLU B 235 N TYR B 30 SHEET 1 AA4 4 VAL B 137 ALA B 141 0 SHEET 2 AA4 4 ILE B 111 GLY B 115 1 N ILE B 111 O SER B 138 SHEET 3 AA4 4 VAL B 176 GLY B 180 1 O VAL B 176 N LEU B 112 SHEET 4 AA4 4 LEU B 206 HIS B 209 1 O LEU B 206 N VAL B 177 CISPEP 1 VAL A 37 PRO A 38 0 2.72 CISPEP 2 VAL B 37 PRO B 38 0 -2.45 SITE 1 AC1 14 ASP A 7 SER A 8 PRO A 38 TYR A 39 SITE 2 AC1 14 GLY A 40 CYS A 70 ASN A 71 THR A 72 SITE 3 AC1 14 THR A 116 CYS A 181 THR A 182 HOH A 420 SITE 4 AC1 14 HOH A 425 HOH A 459 SITE 1 AC2 4 ILE A 149 GLU A 150 ASN A 152 TRP A 252 SITE 1 AC3 8 ILE A 153 GLU A 155 GLY A 156 GLU A 157 SITE 2 AC3 8 LEU A 158 THR A 223 HOH A 422 TYR B 165 SITE 1 AC4 15 ASP B 7 SER B 8 PRO B 38 TYR B 39 SITE 2 AC4 15 GLY B 40 CYS B 70 ASN B 71 THR B 72 SITE 3 AC4 15 THR B 116 CYS B 181 THR B 182 HIS B 183 SITE 4 AC4 15 HOH B 409 HOH B 434 HOH B 449 SITE 1 AC5 6 ILE B 149 GLU B 150 ASN B 152 LEU B 186 SITE 2 AC5 6 TRP B 252 HOH B 406 SITE 1 AC6 7 GLN B 103 LEU B 207 ILE B 208 HIS B 209 SITE 2 AC6 7 ALA B 213 GLU B 216 HOH B 408 SITE 1 AC7 5 GLU B 155 GLY B 156 GLU B 157 LEU B 158 SITE 2 AC7 5 LEU B 159 CRYST1 61.878 85.555 105.989 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016161 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011688 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009435 0.00000