HEADER MOTOR PROTEIN 07-JUN-17 5W3D TITLE THE STRUCTURE OF KINESIN-14 WILD-TYPE NCD-ADP DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN CLARET SEGREGATIONAL; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NON-CLARET DISJUNCTIONAL; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: NCD, CA(ND), CG7831; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NCD, MICROTUBULE, MOTOR, KINESIN, CELL CYCLE, MOTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.W.PARK,Z.MA,J.CHACKO,S.M.JIANG,R.C.ROBINSON,S.A.ENDOW REVDAT 2 04-OCT-23 5W3D 1 LINK REVDAT 1 20-DEC-17 5W3D 0 JRNL AUTH H.W.PARK,Z.MA,H.ZHU,S.JIANG,R.C.ROBINSON,S.A.ENDOW JRNL TITL STRUCTURAL BASIS OF SMALL MOLECULE ATPASE INHIBITION OF A JRNL TITL 2 HUMAN MITOTIC KINESIN MOTOR PROTEIN. JRNL REF SCI REP V. 7 15121 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 29123223 JRNL DOI 10.1038/S41598-017-14754-6 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 24019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1288 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1577 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.4080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5290 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.00000 REMARK 3 B22 (A**2) : 0.83000 REMARK 3 B33 (A**2) : -5.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.56000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.956 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.376 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5434 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5093 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7344 ; 1.290 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11704 ; 3.609 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 654 ; 5.851 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 263 ;40.438 ;24.411 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 965 ;18.929 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;18.347 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 835 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6083 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1253 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5W3D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228332. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25309 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.789 REMARK 200 RESOLUTION RANGE LOW (A) : 93.521 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.53300 REMARK 200 R SYM FOR SHELL (I) : 0.53300 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1N6M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM PHOSPHATE, 7 MM REMARK 280 DITHIOTHREITOL, 10 MM MAGNESIUM CHLORIDE, 700 MM SODIUM CHLORIDE, REMARK 280 13% PEG8000 (W/V), PH 6.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.63550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.62450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.63550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.62450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 289 REMARK 465 GLY A 290 REMARK 465 SER A 291 REMARK 465 ALA A 385 REMARK 465 GLN A 386 REMARK 465 ALA A 387 REMARK 465 LYS A 388 REMARK 465 SER A 389 REMARK 465 LYS A 390 REMARK 465 MET A 391 REMARK 465 ALA A 540 REMARK 465 THR A 541 REMARK 465 ALA A 542 REMARK 465 SER A 543 REMARK 465 THR A 544 REMARK 465 ALA A 545 REMARK 465 GLY A 546 REMARK 465 ASN A 547 REMARK 465 LYS A 588 REMARK 465 THR A 589 REMARK 465 SER A 590 REMARK 465 THR A 591 REMARK 465 ARG A 592 REMARK 465 MET A 593 REMARK 465 THR A 594 REMARK 465 GLU A 595 REMARK 465 THR A 596 REMARK 465 LYS A 597 REMARK 465 ASN A 598 REMARK 465 MET A 672 REMARK 465 THR A 673 REMARK 465 LYS A 674 REMARK 465 ALA A 675 REMARK 465 LYS A 676 REMARK 465 ARG A 677 REMARK 465 ASN A 678 REMARK 465 ARG A 679 REMARK 465 TYR A 680 REMARK 465 LEU A 681 REMARK 465 ASN A 682 REMARK 465 ASN A 683 REMARK 465 SER A 684 REMARK 465 VAL A 685 REMARK 465 ALA A 686 REMARK 465 ASN A 687 REMARK 465 SER A 688 REMARK 465 SER A 689 REMARK 465 THR A 690 REMARK 465 GLN A 691 REMARK 465 SER A 692 REMARK 465 ASN A 693 REMARK 465 ASN A 694 REMARK 465 SER A 695 REMARK 465 GLY A 696 REMARK 465 ASN A 697 REMARK 465 PHE A 698 REMARK 465 ASP A 699 REMARK 465 LYS A 700 REMARK 465 MET B 289 REMARK 465 GLY B 290 REMARK 465 SER B 291 REMARK 465 GLN B 386 REMARK 465 ALA B 387 REMARK 465 LYS B 388 REMARK 465 SER B 389 REMARK 465 LYS B 390 REMARK 465 LEU B 471 REMARK 465 SER B 494 REMARK 465 ASN B 495 REMARK 465 GLU B 496 REMARK 465 GLN B 497 REMARK 465 LYS B 498 REMARK 465 ASP B 499 REMARK 465 MET B 500 REMARK 465 GLU B 501 REMARK 465 ILE B 502 REMARK 465 ARG B 503 REMARK 465 MET B 504 REMARK 465 ALA B 505 REMARK 465 LYS B 506 REMARK 465 ASN B 507 REMARK 465 ASN B 508 REMARK 465 LYS B 509 REMARK 465 ASN B 510 REMARK 465 ASP B 511 REMARK 465 ILE B 512 REMARK 465 TYR B 513 REMARK 465 VAL B 514 REMARK 465 SER B 515 REMARK 465 ASN B 516 REMARK 465 ILE B 517 REMARK 465 THR B 541 REMARK 465 ALA B 542 REMARK 465 SER B 543 REMARK 465 THR B 544 REMARK 465 ALA B 545 REMARK 465 GLY B 546 REMARK 465 ASN B 547 REMARK 465 GLU B 548 REMARK 465 ARG B 549 REMARK 465 ALA B 566 REMARK 465 GLU B 567 REMARK 465 LYS B 568 REMARK 465 GLN B 569 REMARK 465 GLU B 570 REMARK 465 ILE B 571 REMARK 465 LYS B 588 REMARK 465 THR B 589 REMARK 465 SER B 590 REMARK 465 THR B 591 REMARK 465 ARG B 592 REMARK 465 MET B 593 REMARK 465 THR B 594 REMARK 465 GLU B 595 REMARK 465 THR B 596 REMARK 465 LYS B 597 REMARK 465 ASN B 598 REMARK 465 ILE B 599 REMARK 465 GLN B 617 REMARK 465 ASP B 618 REMARK 465 HIS B 619 REMARK 465 ILE B 620 REMARK 465 SER B 634 REMARK 465 LEU B 635 REMARK 465 GLY B 636 REMARK 465 GLY B 637 REMARK 465 CYS B 670 REMARK 465 LYS B 671 REMARK 465 MET B 672 REMARK 465 THR B 673 REMARK 465 LYS B 674 REMARK 465 ALA B 675 REMARK 465 LYS B 676 REMARK 465 ARG B 677 REMARK 465 ASN B 678 REMARK 465 ARG B 679 REMARK 465 TYR B 680 REMARK 465 LEU B 681 REMARK 465 ASN B 682 REMARK 465 ASN B 683 REMARK 465 SER B 684 REMARK 465 VAL B 685 REMARK 465 ALA B 686 REMARK 465 ASN B 687 REMARK 465 SER B 688 REMARK 465 SER B 689 REMARK 465 THR B 690 REMARK 465 GLN B 691 REMARK 465 SER B 692 REMARK 465 ASN B 693 REMARK 465 ASN B 694 REMARK 465 SER B 695 REMARK 465 GLY B 696 REMARK 465 ASN B 697 REMARK 465 PHE B 698 REMARK 465 ASP B 699 REMARK 465 LYS B 700 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 599 CG1 CG2 CD1 REMARK 470 ASN A 600 CG OD1 ND2 REMARK 470 ARG B 469 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 470 CG OD1 ND2 REMARK 470 GLU B 487 CG CD OE1 OE2 REMARK 470 ASN B 600 CG OD1 ND2 REMARK 470 LYS B 616 CG CD CE NZ REMARK 470 ARG B 623 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 629 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 630 CG CD1 CD2 REMARK 470 LEU B 631 CG CD1 CD2 REMARK 470 MET B 632 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 611 CG GLN B 615 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB ASN A 364 OD1 ASN B 624 2565 1.69 REMARK 500 CG ASN A 364 OD1 ASN B 624 2565 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 505 CB - CA - C ANGL. DEV. = 11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 364 44.86 -140.09 REMARK 500 ASN A 508 109.53 -162.41 REMARK 500 ARG A 601 -61.13 -106.26 REMARK 500 PRO A 621 47.51 -77.66 REMARK 500 PRO A 633 2.85 -69.81 REMARK 500 CYS A 670 45.78 -92.62 REMARK 500 GLU B 362 33.58 -141.44 REMARK 500 TYR B 485 -73.97 -85.90 REMARK 500 GLU B 487 0.20 82.38 REMARK 500 ARG B 552 51.44 -149.32 REMARK 500 THR B 557 81.41 -156.48 REMARK 500 LEU B 559 50.31 -146.80 REMARK 500 SER B 575 163.20 175.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 441 OG1 REMARK 620 2 ADP A 802 O2B 132.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 441 OG1 REMARK 620 2 ADP B 802 O1B 83.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 802 DBREF 5W3D A 293 700 UNP P20480 NCD_DROME 293 700 DBREF 5W3D B 293 700 UNP P20480 NCD_DROME 293 700 SEQADV 5W3D MET A 289 UNP P20480 INITIATING METHIONINE SEQADV 5W3D GLY A 290 UNP P20480 EXPRESSION TAG SEQADV 5W3D SER A 291 UNP P20480 EXPRESSION TAG SEQADV 5W3D MET A 292 UNP P20480 EXPRESSION TAG SEQADV 5W3D ASN A 697 UNP P20480 SER 697 CONFLICT SEQADV 5W3D MET B 289 UNP P20480 INITIATING METHIONINE SEQADV 5W3D GLY B 290 UNP P20480 EXPRESSION TAG SEQADV 5W3D SER B 291 UNP P20480 EXPRESSION TAG SEQADV 5W3D MET B 292 UNP P20480 EXPRESSION TAG SEQADV 5W3D ASN B 697 UNP P20480 SER 697 CONFLICT SEQRES 1 A 412 MET GLY SER MET HIS ALA ALA LEU SER THR GLU VAL VAL SEQRES 2 A 412 HIS LEU ARG GLN ARG THR GLU GLU LEU LEU ARG CYS ASN SEQRES 3 A 412 GLU GLN GLN ALA ALA GLU LEU GLU THR CYS LYS GLU GLN SEQRES 4 A 412 LEU PHE GLN SER ASN MET GLU ARG LYS GLU LEU HIS ASN SEQRES 5 A 412 THR VAL MET ASP LEU ARG GLY ASN ILE ARG VAL PHE CYS SEQRES 6 A 412 ARG ILE ARG PRO PRO LEU GLU SER GLU GLU ASN ARG MET SEQRES 7 A 412 CYS CYS THR TRP THR TYR HIS ASP GLU SER THR VAL GLU SEQRES 8 A 412 LEU GLN SER ILE ASP ALA GLN ALA LYS SER LYS MET GLY SEQRES 9 A 412 GLN GLN ILE PHE SER PHE ASP GLN VAL PHE HIS PRO LEU SEQRES 10 A 412 SER SER GLN SER ASP ILE PHE GLU MET VAL SER PRO LEU SEQRES 11 A 412 ILE GLN SER ALA LEU ASP GLY TYR ASN ILE CYS ILE PHE SEQRES 12 A 412 ALA TYR GLY GLN THR GLY SER GLY LYS THR TYR THR MET SEQRES 13 A 412 ASP GLY VAL PRO GLU SER VAL GLY VAL ILE PRO ARG THR SEQRES 14 A 412 VAL ASP LEU LEU PHE ASP SER ILE ARG GLY TYR ARG ASN SEQRES 15 A 412 LEU GLY TRP GLU TYR GLU ILE LYS ALA THR PHE LEU GLU SEQRES 16 A 412 ILE TYR ASN GLU VAL LEU TYR ASP LEU LEU SER ASN GLU SEQRES 17 A 412 GLN LYS ASP MET GLU ILE ARG MET ALA LYS ASN ASN LYS SEQRES 18 A 412 ASN ASP ILE TYR VAL SER ASN ILE THR GLU GLU THR VAL SEQRES 19 A 412 LEU ASP PRO ASN HIS LEU ARG HIS LEU MET HIS THR ALA SEQRES 20 A 412 LYS MET ASN ARG ALA THR ALA SER THR ALA GLY ASN GLU SEQRES 21 A 412 ARG SER SER ARG SER HIS ALA VAL THR LYS LEU GLU LEU SEQRES 22 A 412 ILE GLY ARG HIS ALA GLU LYS GLN GLU ILE SER VAL GLY SEQRES 23 A 412 SER ILE ASN LEU VAL ASP LEU ALA GLY SER GLU SER PRO SEQRES 24 A 412 LYS THR SER THR ARG MET THR GLU THR LYS ASN ILE ASN SEQRES 25 A 412 ARG SER LEU SER GLU LEU THR ASN VAL ILE LEU ALA LEU SEQRES 26 A 412 LEU GLN LYS GLN ASP HIS ILE PRO TYR ARG ASN SER LYS SEQRES 27 A 412 LEU THR HIS LEU LEU MET PRO SER LEU GLY GLY ASN SER SEQRES 28 A 412 LYS THR LEU MET PHE ILE ASN VAL SER PRO PHE GLN ASP SEQRES 29 A 412 CYS PHE GLN GLU SER VAL LYS SER LEU ARG PHE ALA ALA SEQRES 30 A 412 SER VAL ASN SER CYS LYS MET THR LYS ALA LYS ARG ASN SEQRES 31 A 412 ARG TYR LEU ASN ASN SER VAL ALA ASN SER SER THR GLN SEQRES 32 A 412 SER ASN ASN SER GLY ASN PHE ASP LYS SEQRES 1 B 412 MET GLY SER MET HIS ALA ALA LEU SER THR GLU VAL VAL SEQRES 2 B 412 HIS LEU ARG GLN ARG THR GLU GLU LEU LEU ARG CYS ASN SEQRES 3 B 412 GLU GLN GLN ALA ALA GLU LEU GLU THR CYS LYS GLU GLN SEQRES 4 B 412 LEU PHE GLN SER ASN MET GLU ARG LYS GLU LEU HIS ASN SEQRES 5 B 412 THR VAL MET ASP LEU ARG GLY ASN ILE ARG VAL PHE CYS SEQRES 6 B 412 ARG ILE ARG PRO PRO LEU GLU SER GLU GLU ASN ARG MET SEQRES 7 B 412 CYS CYS THR TRP THR TYR HIS ASP GLU SER THR VAL GLU SEQRES 8 B 412 LEU GLN SER ILE ASP ALA GLN ALA LYS SER LYS MET GLY SEQRES 9 B 412 GLN GLN ILE PHE SER PHE ASP GLN VAL PHE HIS PRO LEU SEQRES 10 B 412 SER SER GLN SER ASP ILE PHE GLU MET VAL SER PRO LEU SEQRES 11 B 412 ILE GLN SER ALA LEU ASP GLY TYR ASN ILE CYS ILE PHE SEQRES 12 B 412 ALA TYR GLY GLN THR GLY SER GLY LYS THR TYR THR MET SEQRES 13 B 412 ASP GLY VAL PRO GLU SER VAL GLY VAL ILE PRO ARG THR SEQRES 14 B 412 VAL ASP LEU LEU PHE ASP SER ILE ARG GLY TYR ARG ASN SEQRES 15 B 412 LEU GLY TRP GLU TYR GLU ILE LYS ALA THR PHE LEU GLU SEQRES 16 B 412 ILE TYR ASN GLU VAL LEU TYR ASP LEU LEU SER ASN GLU SEQRES 17 B 412 GLN LYS ASP MET GLU ILE ARG MET ALA LYS ASN ASN LYS SEQRES 18 B 412 ASN ASP ILE TYR VAL SER ASN ILE THR GLU GLU THR VAL SEQRES 19 B 412 LEU ASP PRO ASN HIS LEU ARG HIS LEU MET HIS THR ALA SEQRES 20 B 412 LYS MET ASN ARG ALA THR ALA SER THR ALA GLY ASN GLU SEQRES 21 B 412 ARG SER SER ARG SER HIS ALA VAL THR LYS LEU GLU LEU SEQRES 22 B 412 ILE GLY ARG HIS ALA GLU LYS GLN GLU ILE SER VAL GLY SEQRES 23 B 412 SER ILE ASN LEU VAL ASP LEU ALA GLY SER GLU SER PRO SEQRES 24 B 412 LYS THR SER THR ARG MET THR GLU THR LYS ASN ILE ASN SEQRES 25 B 412 ARG SER LEU SER GLU LEU THR ASN VAL ILE LEU ALA LEU SEQRES 26 B 412 LEU GLN LYS GLN ASP HIS ILE PRO TYR ARG ASN SER LYS SEQRES 27 B 412 LEU THR HIS LEU LEU MET PRO SER LEU GLY GLY ASN SER SEQRES 28 B 412 LYS THR LEU MET PHE ILE ASN VAL SER PRO PHE GLN ASP SEQRES 29 B 412 CYS PHE GLN GLU SER VAL LYS SER LEU ARG PHE ALA ALA SEQRES 30 B 412 SER VAL ASN SER CYS LYS MET THR LYS ALA LYS ARG ASN SEQRES 31 B 412 ARG TYR LEU ASN ASN SER VAL ALA ASN SER SER THR GLN SEQRES 32 B 412 SER ASN ASN SER GLY ASN PHE ASP LYS HET MG A 801 1 HET ADP A 802 27 HET MG B 801 1 HET ADP B 802 27 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 ADP 2(C10 H15 N5 O10 P2) HELIX 1 AA1 MET A 292 GLY A 347 1 56 HELIX 2 AA2 SER A 407 MET A 414 1 8 HELIX 3 AA3 VAL A 415 ASP A 424 1 10 HELIX 4 AA4 GLY A 439 ASP A 445 1 7 HELIX 5 AA5 GLY A 452 ARG A 469 1 18 HELIX 6 AA6 ASP A 524 ARG A 539 1 16 HELIX 7 AA7 ARG A 549 SER A 553 5 5 HELIX 8 AA8 ARG A 601 GLN A 615 1 15 HELIX 9 AA9 PRO A 621 ASN A 624 5 4 HELIX 10 AB1 SER A 625 LEU A 631 1 7 HELIX 11 AB2 MET A 632 LEU A 635 5 4 HELIX 12 AB3 PHE A 650 ASP A 652 5 3 HELIX 13 AB4 CYS A 653 CYS A 670 1 18 HELIX 14 AB5 ALA B 294 ARG B 346 1 53 HELIX 15 AB6 SER B 407 MET B 414 1 8 HELIX 16 AB7 VAL B 415 GLY B 425 1 11 HELIX 17 AB8 GLY B 439 ASP B 445 1 7 HELIX 18 AB9 GLY B 452 ARG B 469 1 18 HELIX 19 AC1 ASP B 524 ARG B 539 1 16 HELIX 20 AC2 ARG B 601 GLN B 615 1 15 HELIX 21 AC3 LYS B 626 LEU B 631 1 6 HELIX 22 AC4 PHE B 650 ASP B 652 5 3 HELIX 23 AC5 CYS B 653 ASN B 668 1 16 SHEET 1 AA1 8 GLN A 400 PHE A 402 0 SHEET 2 AA1 8 ILE A 349 ILE A 355 1 N CYS A 353 O PHE A 402 SHEET 3 AA1 8 LYS A 640 VAL A 647 1 O ILE A 645 N PHE A 352 SHEET 4 AA1 8 ILE A 428 TYR A 433 1 N TYR A 433 O ASN A 646 SHEET 5 AA1 8 GLU A 570 ASP A 580 1 O VAL A 579 N ILE A 430 SHEET 6 AA1 8 HIS A 554 HIS A 565 -1 N LEU A 561 O GLY A 574 SHEET 7 AA1 8 TRP A 473 TYR A 485 -1 N THR A 480 O LYS A 558 SHEET 8 AA1 8 VAL A 488 ASP A 491 -1 O TYR A 490 N GLU A 483 SHEET 1 AA2 8 GLN A 400 PHE A 402 0 SHEET 2 AA2 8 ILE A 349 ILE A 355 1 N CYS A 353 O PHE A 402 SHEET 3 AA2 8 LYS A 640 VAL A 647 1 O ILE A 645 N PHE A 352 SHEET 4 AA2 8 ILE A 428 TYR A 433 1 N TYR A 433 O ASN A 646 SHEET 5 AA2 8 GLU A 570 ASP A 580 1 O VAL A 579 N ILE A 430 SHEET 6 AA2 8 HIS A 554 HIS A 565 -1 N LEU A 561 O GLY A 574 SHEET 7 AA2 8 TRP A 473 TYR A 485 -1 N THR A 480 O LYS A 558 SHEET 8 AA2 8 GLU A 520 THR A 521 -1 O GLU A 520 N ALA A 479 SHEET 1 AA3 3 THR A 369 THR A 371 0 SHEET 2 AA3 3 THR A 377 GLN A 381 -1 O GLU A 379 N THR A 371 SHEET 3 AA3 3 GLN A 394 SER A 397 -1 O PHE A 396 N VAL A 378 SHEET 1 AA4 2 GLY A 446 VAL A 447 0 SHEET 2 AA4 2 SER A 450 VAL A 451 -1 O SER A 450 N VAL A 447 SHEET 1 AA5 2 ILE A 502 MET A 504 0 SHEET 2 AA5 2 ILE A 512 VAL A 514 -1 O TYR A 513 N ARG A 503 SHEET 1 AA6 5 GLN B 400 PHE B 402 0 SHEET 2 AA6 5 ILE B 349 ILE B 355 1 N CYS B 353 O PHE B 402 SHEET 3 AA6 5 THR B 641 VAL B 647 1 O MET B 643 N PHE B 352 SHEET 4 AA6 5 ASN B 427 GLY B 434 1 N TYR B 433 O ASN B 646 SHEET 5 AA6 5 SER B 575 ASP B 580 1 O VAL B 579 N ILE B 430 SHEET 1 AA7 3 THR B 369 TYR B 372 0 SHEET 2 AA7 3 THR B 377 GLN B 381 -1 O GLU B 379 N THR B 371 SHEET 3 AA7 3 ILE B 395 SER B 397 -1 O PHE B 396 N VAL B 378 SHEET 1 AA8 2 GLY B 446 VAL B 447 0 SHEET 2 AA8 2 SER B 450 VAL B 451 -1 O SER B 450 N VAL B 447 SHEET 1 AA9 3 GLU B 520 VAL B 522 0 SHEET 2 AA9 3 GLU B 474 ALA B 479 -1 N ILE B 477 O VAL B 522 SHEET 3 AA9 3 LEU B 561 ARG B 564 -1 O ILE B 562 N GLU B 476 SHEET 1 AB1 3 LEU B 489 ASP B 491 0 SHEET 2 AB1 3 LEU B 482 ILE B 484 -1 N GLU B 483 O TYR B 490 SHEET 3 AB1 3 HIS B 554 VAL B 556 -1 O VAL B 556 N LEU B 482 LINK OG1 THR A 441 MG MG A 801 1555 1555 2.14 LINK MG MG A 801 O2B ADP A 802 1555 1555 2.42 LINK OG1 THR B 441 MG MG B 801 1555 1555 2.05 LINK MG MG B 801 O1B ADP B 802 1555 1555 1.97 CISPEP 1 TYR B 622 ARG B 623 0 0.03 SITE 1 AC1 2 THR A 441 ADP A 802 SITE 1 AC2 11 ARG A 354 ARG A 356 PRO A 357 THR A 436 SITE 2 AC2 11 GLY A 437 SER A 438 GLY A 439 LYS A 440 SITE 3 AC2 11 THR A 441 TYR A 442 MG A 801 SITE 1 AC3 2 THR B 441 ADP B 802 SITE 1 AC4 10 ARG B 354 ARG B 356 PRO B 357 GLY B 437 SITE 2 AC4 10 SER B 438 GLY B 439 LYS B 440 THR B 441 SITE 3 AC4 10 TYR B 442 MG B 801 CRYST1 163.271 67.249 94.421 90.00 97.92 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006125 0.000000 0.000852 0.00000 SCALE2 0.000000 0.014870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010693 0.00000