HEADER DNA BINDING PROTEIN 07-JUN-17 5W3G TITLE SOLUTION STRUCTURE OF ETS TRANSCRIPTION FACTOR PU.1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION FACTOR PU.1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 167-272; COMPND 5 SYNONYM: 31 KDA-TRANSFORMING PROTEIN,SFFV PROVIRAL INTEGRATION 1 COMPND 6 PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SPI1, SFPI-1, SFPI1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS WINGED HELIX-TURN-HELIX, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR D.K.W.LAU,M.OKON,L.P.MCINTOSH REVDAT 3 15-MAY-24 5W3G 1 REMARK REVDAT 2 14-JUN-23 5W3G 1 REMARK REVDAT 1 13-JUN-18 5W3G 0 JRNL AUTH D.K.W.LAU JRNL TITL CONSERVED PROTEIN DYNAMICS WITHIN THE ETS TRANSCRIPTION JRNL TITL 2 FACTOR FAMILY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, NMRE REMARK 3 AUTHORS : GUNTERT P. (CYANA), RYU H, LIM G, SUNG BH, LEE J. REMARK 3 (NMRE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NMRE REMARK 4 REMARK 4 5W3G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228330. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 150MM KCL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-99% 13C; U-99% 15N] REMARK 210 DNA BINDING PROTEIN, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 2D 1H- REMARK 210 13C HSQC AROMATIC; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 PHE A 254 CB - CG - CD2 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 TYR A 175 CB - CG - CD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 3 TYR A 175 CB - CG - CD1 ANGL. DEV. = 4.9 DEGREES REMARK 500 4 TYR A 237 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 5 TYR A 252 CB - CG - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 5 TYR A 252 CB - CG - CD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 5 PHE A 254 CB - CG - CD2 ANGL. DEV. = 4.3 DEGREES REMARK 500 6 PHE A 254 CB - CG - CD2 ANGL. DEV. = 4.4 DEGREES REMARK 500 7 PHE A 254 CB - CG - CD2 ANGL. DEV. = 4.3 DEGREES REMARK 500 8 PHE A 254 CB - CG - CD2 ANGL. DEV. = 4.3 DEGREES REMARK 500 9 TYR A 175 CB - CG - CD1 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 164 121.77 74.16 REMARK 500 2 ILE A 164 109.04 72.99 REMARK 500 2 HIS A 165 -43.17 66.25 REMARK 500 2 ASN A 221 44.42 -84.80 REMARK 500 3 ASN A 221 47.38 -84.79 REMARK 500 4 ARG A 261 -49.20 66.48 REMARK 500 6 MET A 187 55.24 -90.60 REMARK 500 6 LEU A 269 116.57 72.33 REMARK 500 8 ILE A 164 119.88 74.78 REMARK 500 8 LYS A 223 134.79 74.41 REMARK 500 9 ASN A 221 -42.62 47.53 REMARK 500 10 SER A 190 -50.17 -147.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 163 ILE A 164 5 -143.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 TYR A 252 0.08 SIDE CHAIN REMARK 500 8 TYR A 175 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30303 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF ETS TRANSCRIPTION FACTOR PU.1 DBREF 5W3G A 167 272 UNP P17433 SPI1_MOUSE 167 272 SEQADV 5W3G HIS A 163 UNP P17433 EXPRESSION TAG SEQADV 5W3G ILE A 164 UNP P17433 EXPRESSION TAG SEQADV 5W3G HIS A 165 UNP P17433 EXPRESSION TAG SEQADV 5W3G MET A 166 UNP P17433 EXPRESSION TAG SEQRES 1 A 110 HIS ILE HIS MET GLY SER LYS LYS LYS ILE ARG LEU TYR SEQRES 2 A 110 GLN PHE LEU LEU ASP LEU LEU ARG SER GLY ASP MET LYS SEQRES 3 A 110 ASP SER ILE TRP TRP VAL ASP LYS ASP LYS GLY THR PHE SEQRES 4 A 110 GLN PHE SER SER LYS HIS LYS GLU ALA LEU ALA HIS ARG SEQRES 5 A 110 TRP GLY ILE GLN LYS GLY ASN ARG LYS LYS MET THR TYR SEQRES 6 A 110 GLN LYS MET ALA ARG ALA LEU ARG ASN TYR GLY LYS THR SEQRES 7 A 110 GLY GLU VAL LYS LYS VAL LYS LYS LYS LEU THR TYR GLN SEQRES 8 A 110 PHE SER GLY GLU VAL LEU GLY ARG GLY GLY LEU ALA GLU SEQRES 9 A 110 ARG ARG LEU PRO PRO HIS HELIX 1 AA1 ARG A 173 SER A 184 1 12 HELIX 2 AA2 HIS A 207 GLY A 220 1 14 HELIX 3 AA3 THR A 226 ASN A 236 1 11 HELIX 4 AA4 TYR A 237 LYS A 239 5 3 HELIX 5 AA5 SER A 255 ARG A 261 1 7 SHEET 1 AA1 4 ILE A 191 TRP A 193 0 SHEET 2 AA1 4 THR A 200 PHE A 203 -1 O GLN A 202 N TRP A 192 SHEET 3 AA1 4 THR A 251 PHE A 254 -1 O TYR A 252 N PHE A 201 SHEET 4 AA1 4 VAL A 243 LYS A 245 -1 N LYS A 244 O GLN A 253 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1