HEADER ISOMERASE 08-JUN-17 5W3K TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS AUREUS KETOL-ACID REDUCTOISOMERASE TITLE 2 IN COMPLEX NADPH, MG2+ AND CPD COMPND MOL_ID: 1; COMPND 2 MOLECULE: KETOL-ACID REDUCTOISOMERASE (NADP(+)); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: KARI,ACETOHYDROXY-ACID ISOMEROREDUCTASE,AHIR,ALPHA-KETO- COMPND 5 BETA-HYDROXYLACYL REDUCTOISOMERASE; COMPND 6 EC: 1.1.1.86; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: ILVC, BMF23_13825, BO217_1422, ERS072840_02559; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS KETOL-ACID REDUCTISOMERASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.PATEL,D.TERAN,S.ZHENG,A.KANDALE,M.SCHEMBRI,R.P.MCGEARY,G.SCHENK, AUTHOR 2 L.W.GUDDAT REVDAT 5 04-OCT-23 5W3K 1 LINK REVDAT 4 01-JAN-20 5W3K 1 REMARK REVDAT 3 17-JAN-18 5W3K 1 REMARK REVDAT 2 03-JAN-18 5W3K 1 JRNL REVDAT 1 25-OCT-17 5W3K 0 JRNL AUTH K.M.PATEL,D.TERAN,S.ZHENG,A.KANDALE,M.GARCIA,Y.LV, JRNL AUTH 2 M.A.SCHEMBRI,R.P.MCGEARY,G.SCHENK,L.W.GUDDAT JRNL TITL CRYSTAL STRUCTURES OF STAPHYLOCOCCUS AUREUS KETOL-ACID JRNL TITL 2 REDUCTOISOMERASE IN COMPLEX WITH TWO TRANSITION STATE JRNL TITL 3 ANALOGUES THAT HAVE BIOCIDAL ACTIVITY. JRNL REF CHEMISTRY V. 23 18289 2017 JRNL REFN ISSN 1521-3765 JRNL PMID 28975665 JRNL DOI 10.1002/CHEM.201704481 REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 90015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.210 REMARK 3 FREE R VALUE TEST SET COUNT : 1987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.5532 - 3.8276 1.00 6502 151 0.1378 0.1612 REMARK 3 2 3.8276 - 3.0387 1.00 6386 136 0.1454 0.1724 REMARK 3 3 3.0387 - 2.6547 1.00 6397 143 0.1625 0.1880 REMARK 3 4 2.6547 - 2.4121 1.00 6371 141 0.1605 0.1757 REMARK 3 5 2.4121 - 2.2392 0.99 6290 155 0.1541 0.1919 REMARK 3 6 2.2392 - 2.1072 0.99 6297 147 0.1571 0.1773 REMARK 3 7 2.1072 - 2.0017 0.99 6320 133 0.1652 0.1885 REMARK 3 8 2.0017 - 1.9146 0.99 6280 141 0.1704 0.1934 REMARK 3 9 1.9146 - 1.8409 0.98 6225 144 0.1838 0.2240 REMARK 3 10 1.8409 - 1.7774 0.98 6243 140 0.1884 0.2195 REMARK 3 11 1.7774 - 1.7218 0.98 6265 145 0.1928 0.2270 REMARK 3 12 1.7218 - 1.6726 0.98 6255 132 0.1966 0.2281 REMARK 3 13 1.6726 - 1.6285 0.98 6178 139 0.1965 0.2269 REMARK 3 14 1.6285 - 1.5888 0.95 6019 140 0.2265 0.2453 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5532 REMARK 3 ANGLE : 1.057 7538 REMARK 3 CHIRALITY : 0.060 808 REMARK 3 PLANARITY : 0.007 996 REMARK 3 DIHEDRAL : 5.909 4441 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5W3K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228338. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00640 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90047 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.589 REMARK 200 RESOLUTION RANGE LOW (A) : 34.545 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.65900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4XDZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE PH8 22.5 % PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.38650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -163.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 328 REMARK 465 SER A 329 REMARK 465 LYS A 330 REMARK 465 SER A 331 REMARK 465 ILE A 332 REMARK 465 GLU A 333 REMARK 465 LYS A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 HIS A 340 REMARK 465 MET B 1 REMARK 465 LYS B 328 REMARK 465 SER B 329 REMARK 465 LYS B 330 REMARK 465 SER B 331 REMARK 465 ILE B 332 REMARK 465 GLU B 333 REMARK 465 LYS B 334 REMARK 465 HIS B 335 REMARK 465 HIS B 336 REMARK 465 HIS B 337 REMARK 465 HIS B 338 REMARK 465 HIS B 339 REMARK 465 HIS B 340 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 755 O HOH A 785 2.11 REMARK 500 O HOH A 516 O HOH A 790 2.12 REMARK 500 O HOH B 504 O HOH B 625 2.16 REMARK 500 O HOH B 731 O HOH B 733 2.18 REMARK 500 O HOH A 686 O HOH A 724 2.18 REMARK 500 O HOH B 735 O HOH B 777 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 681 O HOH B 665 2545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 25 50.52 -141.19 REMARK 500 SER A 144 -151.76 -106.18 REMARK 500 VAL A 197 -61.81 -127.18 REMARK 500 TYR B 25 58.51 -145.05 REMARK 500 SER B 144 -155.35 -102.06 REMARK 500 VAL B 197 -61.07 -130.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 70 O REMARK 620 2 LYS A 71 O 81.4 REMARK 620 3 ALA A 73 O 96.6 114.0 REMARK 620 4 HOH A 543 O 93.3 98.2 147.3 REMARK 620 5 HOH A 654 O 169.9 89.0 84.4 91.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 190 OD1 REMARK 620 2 HOH A 574 O 83.3 REMARK 620 3 9TY B 401 O09 94.8 90.5 REMARK 620 4 9TY B 401 O01 158.0 94.7 63.3 REMARK 620 5 HOH B 537 O 101.2 93.7 163.9 100.8 REMARK 620 6 HOH B 559 O 90.5 173.2 87.0 89.8 90.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 190 OD2 REMARK 620 2 GLU A 194 OE2 89.2 REMARK 620 3 HOH A 531 O 93.8 90.0 REMARK 620 4 HOH A 664 O 87.1 174.9 86.8 REMARK 620 5 9TY B 401 O05 170.0 91.9 96.1 92.3 REMARK 620 6 9TY B 401 O09 87.6 90.2 178.6 93.1 82.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 9TY A 401 O05 REMARK 620 2 9TY A 401 O06 63.9 REMARK 620 3 HOH A 519 O 101.3 165.0 REMARK 620 4 HOH A 568 O 90.3 87.8 90.3 REMARK 620 5 ASP B 190 OD1 159.3 95.5 99.3 90.8 REMARK 620 6 HOH B 565 O 94.2 91.3 92.0 174.4 83.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 9TY A 401 O01 REMARK 620 2 9TY A 401 O06 83.1 REMARK 620 3 ASP B 190 OD2 170.4 87.6 REMARK 620 4 GLU B 194 OE2 89.0 90.1 88.7 REMARK 620 5 HOH B 543 O 96.5 178.4 92.8 88.3 REMARK 620 6 HOH B 690 O 93.6 92.9 89.2 176.3 88.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9TY A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9TY B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP B 404 DBREF1 5W3K A 1 334 UNP A0A145BYP4_STAAU DBREF2 5W3K A A0A145BYP4 1 334 DBREF1 5W3K B 1 334 UNP A0A145BYP4_STAAU DBREF2 5W3K B A0A145BYP4 1 334 SEQADV 5W3K HIS A 335 UNP A0A145BYP EXPRESSION TAG SEQADV 5W3K HIS A 336 UNP A0A145BYP EXPRESSION TAG SEQADV 5W3K HIS A 337 UNP A0A145BYP EXPRESSION TAG SEQADV 5W3K HIS A 338 UNP A0A145BYP EXPRESSION TAG SEQADV 5W3K HIS A 339 UNP A0A145BYP EXPRESSION TAG SEQADV 5W3K HIS A 340 UNP A0A145BYP EXPRESSION TAG SEQADV 5W3K HIS B 335 UNP A0A145BYP EXPRESSION TAG SEQADV 5W3K HIS B 336 UNP A0A145BYP EXPRESSION TAG SEQADV 5W3K HIS B 337 UNP A0A145BYP EXPRESSION TAG SEQADV 5W3K HIS B 338 UNP A0A145BYP EXPRESSION TAG SEQADV 5W3K HIS B 339 UNP A0A145BYP EXPRESSION TAG SEQADV 5W3K HIS B 340 UNP A0A145BYP EXPRESSION TAG SEQRES 1 A 340 MET THR THR VAL TYR TYR ASP GLN ASP VAL LYS THR ASP SEQRES 2 A 340 ALA LEU GLN GLY LYS LYS ILE ALA VAL VAL GLY TYR GLY SEQRES 3 A 340 SER GLN GLY HIS ALA HIS ALA GLN ASN LEU LYS ASP ASN SEQRES 4 A 340 GLY TYR ASP VAL VAL ILE GLY ILE ARG PRO GLY ARG SER SEQRES 5 A 340 PHE ASP LYS ALA LYS GLU ASP GLY PHE ASP VAL PHE PRO SEQRES 6 A 340 VAL ALA GLU ALA VAL LYS GLN ALA ASP VAL ILE MET VAL SEQRES 7 A 340 LEU LEU PRO ASP GLU ILE GLN GLY ASP VAL TYR LYS ASN SEQRES 8 A 340 GLU ILE GLU PRO ASN LEU GLU LYS HIS ASN ALA LEU ALA SEQRES 9 A 340 PHE ALA HIS GLY PHE ASN ILE HIS PHE GLY VAL ILE GLN SEQRES 10 A 340 PRO PRO ALA ASP VAL ASP VAL PHE LEU VAL ALA PRO LYS SEQRES 11 A 340 GLY PRO GLY HIS LEU VAL ARG ARG THR PHE VAL GLU GLY SEQRES 12 A 340 SER ALA VAL PRO SER LEU PHE GLY ILE GLN GLN ASP ALA SEQRES 13 A 340 SER GLY GLN ALA ARG ASN ILE ALA LEU SER TYR ALA LYS SEQRES 14 A 340 GLY ILE GLY ALA THR ARG ALA GLY VAL ILE GLU THR THR SEQRES 15 A 340 PHE LYS GLU GLU THR GLU THR ASP LEU PHE GLY GLU GLN SEQRES 16 A 340 ALA VAL LEU CYS GLY GLY VAL SER LYS LEU ILE GLN SER SEQRES 17 A 340 GLY PHE GLU THR LEU VAL GLU ALA GLY TYR GLN PRO GLU SEQRES 18 A 340 LEU ALA TYR PHE GLU VAL LEU HIS GLU MET LYS LEU ILE SEQRES 19 A 340 VAL ASP LEU MET TYR GLU GLY GLY MET GLU ASN VAL ARG SEQRES 20 A 340 TYR SER ILE SER ASN THR ALA GLU PHE GLY ASP TYR VAL SEQRES 21 A 340 SER GLY PRO ARG VAL ILE THR PRO ASP VAL LYS GLU ASN SEQRES 22 A 340 MET LYS ALA VAL LEU THR ASP ILE GLN ASN GLY ASN PHE SEQRES 23 A 340 SER ASN ARG PHE ILE GLU ASP ASN LYS ASN GLY PHE LYS SEQRES 24 A 340 GLU PHE TYR LYS LEU ARG GLU GLU GLN HIS GLY HIS GLN SEQRES 25 A 340 ILE GLU LYS VAL GLY ARG GLU LEU ARG GLU MET MET PRO SEQRES 26 A 340 PHE ILE LYS SER LYS SER ILE GLU LYS HIS HIS HIS HIS SEQRES 27 A 340 HIS HIS SEQRES 1 B 340 MET THR THR VAL TYR TYR ASP GLN ASP VAL LYS THR ASP SEQRES 2 B 340 ALA LEU GLN GLY LYS LYS ILE ALA VAL VAL GLY TYR GLY SEQRES 3 B 340 SER GLN GLY HIS ALA HIS ALA GLN ASN LEU LYS ASP ASN SEQRES 4 B 340 GLY TYR ASP VAL VAL ILE GLY ILE ARG PRO GLY ARG SER SEQRES 5 B 340 PHE ASP LYS ALA LYS GLU ASP GLY PHE ASP VAL PHE PRO SEQRES 6 B 340 VAL ALA GLU ALA VAL LYS GLN ALA ASP VAL ILE MET VAL SEQRES 7 B 340 LEU LEU PRO ASP GLU ILE GLN GLY ASP VAL TYR LYS ASN SEQRES 8 B 340 GLU ILE GLU PRO ASN LEU GLU LYS HIS ASN ALA LEU ALA SEQRES 9 B 340 PHE ALA HIS GLY PHE ASN ILE HIS PHE GLY VAL ILE GLN SEQRES 10 B 340 PRO PRO ALA ASP VAL ASP VAL PHE LEU VAL ALA PRO LYS SEQRES 11 B 340 GLY PRO GLY HIS LEU VAL ARG ARG THR PHE VAL GLU GLY SEQRES 12 B 340 SER ALA VAL PRO SER LEU PHE GLY ILE GLN GLN ASP ALA SEQRES 13 B 340 SER GLY GLN ALA ARG ASN ILE ALA LEU SER TYR ALA LYS SEQRES 14 B 340 GLY ILE GLY ALA THR ARG ALA GLY VAL ILE GLU THR THR SEQRES 15 B 340 PHE LYS GLU GLU THR GLU THR ASP LEU PHE GLY GLU GLN SEQRES 16 B 340 ALA VAL LEU CYS GLY GLY VAL SER LYS LEU ILE GLN SER SEQRES 17 B 340 GLY PHE GLU THR LEU VAL GLU ALA GLY TYR GLN PRO GLU SEQRES 18 B 340 LEU ALA TYR PHE GLU VAL LEU HIS GLU MET LYS LEU ILE SEQRES 19 B 340 VAL ASP LEU MET TYR GLU GLY GLY MET GLU ASN VAL ARG SEQRES 20 B 340 TYR SER ILE SER ASN THR ALA GLU PHE GLY ASP TYR VAL SEQRES 21 B 340 SER GLY PRO ARG VAL ILE THR PRO ASP VAL LYS GLU ASN SEQRES 22 B 340 MET LYS ALA VAL LEU THR ASP ILE GLN ASN GLY ASN PHE SEQRES 23 B 340 SER ASN ARG PHE ILE GLU ASP ASN LYS ASN GLY PHE LYS SEQRES 24 B 340 GLU PHE TYR LYS LEU ARG GLU GLU GLN HIS GLY HIS GLN SEQRES 25 B 340 ILE GLU LYS VAL GLY ARG GLU LEU ARG GLU MET MET PRO SEQRES 26 B 340 PHE ILE LYS SER LYS SER ILE GLU LYS HIS HIS HIS HIS SEQRES 27 B 340 HIS HIS HET 9TY A 401 9 HET MG A 402 1 HET MG A 403 1 HET MG A 404 1 HET MG A 405 1 HET NDP A 406 96 HET 9TY B 401 9 HET MG B 402 1 HET MG B 403 1 HET NDP B 404 48 HETNAM 9TY CYCLOPROPANE-1,1-DICARBOXYLIC ACID HETNAM MG MAGNESIUM ION HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 3 9TY 2(C5 H6 O4) FORMUL 4 MG 6(MG 2+) FORMUL 8 NDP 2(C21 H30 N7 O17 P3) FORMUL 13 HOH *671(H2 O) HELIX 1 AA1 TYR A 6 VAL A 10 5 5 HELIX 2 AA2 GLY A 26 ASN A 39 1 14 HELIX 3 AA3 GLY A 50 ASP A 59 1 10 HELIX 4 AA4 PRO A 65 ALA A 73 1 9 HELIX 5 AA5 PRO A 81 ILE A 93 1 13 HELIX 6 AA6 GLU A 94 LEU A 97 5 4 HELIX 7 AA7 GLY A 108 PHE A 113 1 6 HELIX 8 AA8 PRO A 132 GLY A 143 1 12 HELIX 9 AA9 GLN A 159 ILE A 171 1 13 HELIX 10 AB1 GLY A 172 ALA A 176 5 5 HELIX 11 AB2 THR A 182 VAL A 197 1 16 HELIX 12 AB3 CYS A 199 ALA A 216 1 18 HELIX 13 AB4 GLN A 219 LEU A 228 1 10 HELIX 14 AB5 LEU A 228 ILE A 250 1 23 HELIX 15 AB6 SER A 251 ILE A 266 1 16 HELIX 16 AB7 THR A 267 ASN A 283 1 17 HELIX 17 AB8 GLY A 284 ASN A 296 1 13 HELIX 18 AB9 PHE A 298 HIS A 309 1 12 HELIX 19 AC1 HIS A 311 MET A 323 1 13 HELIX 20 AC2 TYR B 6 VAL B 10 5 5 HELIX 21 AC3 GLY B 26 ASN B 39 1 14 HELIX 22 AC4 GLY B 50 ASP B 59 1 10 HELIX 23 AC5 PRO B 65 ALA B 73 1 9 HELIX 24 AC6 PRO B 81 ILE B 93 1 13 HELIX 25 AC7 GLU B 94 LEU B 97 5 4 HELIX 26 AC8 GLY B 108 PHE B 113 1 6 HELIX 27 AC9 PRO B 132 GLU B 142 1 11 HELIX 28 AD1 GLN B 159 ILE B 171 1 13 HELIX 29 AD2 GLY B 172 ALA B 176 5 5 HELIX 30 AD3 THR B 182 VAL B 197 1 16 HELIX 31 AD4 CYS B 199 ALA B 216 1 18 HELIX 32 AD5 GLN B 219 LEU B 228 1 10 HELIX 33 AD6 LEU B 228 ILE B 250 1 23 HELIX 34 AD7 SER B 251 ILE B 266 1 16 HELIX 35 AD8 THR B 267 ASN B 283 1 17 HELIX 36 AD9 GLY B 284 ASN B 296 1 13 HELIX 37 AE1 PHE B 298 GLY B 310 1 13 HELIX 38 AE2 HIS B 311 MET B 323 1 13 SHEET 1 AA1 9 VAL A 4 TYR A 5 0 SHEET 2 AA1 9 VAL A 178 GLU A 180 -1 O VAL A 178 N TYR A 5 SHEET 3 AA1 9 SER A 148 GLN A 154 1 N PHE A 150 O ILE A 179 SHEET 4 AA1 9 ASP A 123 PRO A 129 -1 N VAL A 124 O GLN A 153 SHEET 5 AA1 9 ALA A 102 PHE A 105 1 N LEU A 103 O ASP A 123 SHEET 6 AA1 9 VAL A 75 VAL A 78 1 N ILE A 76 O ALA A 104 SHEET 7 AA1 9 LYS A 19 VAL A 23 1 N VAL A 23 O MET A 77 SHEET 8 AA1 9 ASP A 42 GLY A 46 1 O ASP A 42 N ILE A 20 SHEET 9 AA1 9 ASP A 62 PHE A 64 1 O PHE A 64 N ILE A 45 SHEET 1 AA2 9 VAL B 4 TYR B 5 0 SHEET 2 AA2 9 VAL B 178 GLU B 180 -1 O VAL B 178 N TYR B 5 SHEET 3 AA2 9 SER B 148 GLN B 154 1 N PHE B 150 O ILE B 179 SHEET 4 AA2 9 ASP B 123 PRO B 129 -1 N ALA B 128 O LEU B 149 SHEET 5 AA2 9 ALA B 102 PHE B 105 1 N LEU B 103 O ASP B 123 SHEET 6 AA2 9 VAL B 75 VAL B 78 1 N ILE B 76 O ALA B 104 SHEET 7 AA2 9 LYS B 19 VAL B 23 1 N VAL B 23 O MET B 77 SHEET 8 AA2 9 ASP B 42 GLY B 46 1 O ASP B 42 N ILE B 20 SHEET 9 AA2 9 VAL B 63 PHE B 64 1 O PHE B 64 N ILE B 45 LINK O VAL A 70 MG MG A 404 1555 1555 2.34 LINK O LYS A 71 MG MG A 404 1555 1555 2.54 LINK O ALA A 73 MG MG A 404 1555 1555 2.31 LINK OD1 ASP A 190 MG MG A 402 1555 1555 1.97 LINK OD2 ASP A 190 MG MG A 403 1555 1555 2.09 LINK OE2 GLU A 194 MG MG A 403 1555 1555 2.13 LINK O05 9TY A 401 MG MG B 402 1555 1555 2.14 LINK O06 9TY A 401 MG MG B 402 1555 1555 2.04 LINK O01 9TY A 401 MG MG B 403 1555 1555 2.08 LINK O06 9TY A 401 MG MG B 403 1555 1555 2.05 LINK MG MG A 402 O HOH A 574 1555 1555 2.10 LINK MG MG A 402 O09 9TY B 401 1555 1555 2.08 LINK MG MG A 402 O01 9TY B 401 1555 1555 2.08 LINK MG MG A 402 O HOH B 537 1555 1555 2.00 LINK MG MG A 402 O HOH B 559 1555 1555 2.16 LINK MG MG A 403 O HOH A 531 1555 1555 2.05 LINK MG MG A 403 O HOH A 664 1555 1555 2.16 LINK MG MG A 403 O05 9TY B 401 1555 1555 2.08 LINK MG MG A 403 O09 9TY B 401 1555 1555 2.00 LINK MG MG A 404 O HOH A 543 1555 1555 2.11 LINK MG MG A 404 O HOH A 654 1555 1555 2.37 LINK MG MG A 405 O HOH A 781 1555 1555 2.76 LINK O HOH A 519 MG MG B 402 1555 1555 2.02 LINK O HOH A 568 MG MG B 402 1555 1555 2.11 LINK OD1 ASP B 190 MG MG B 402 1555 1555 1.95 LINK OD2 ASP B 190 MG MG B 403 1555 1555 2.08 LINK OE2 GLU B 194 MG MG B 403 1555 1555 2.15 LINK MG MG B 402 O HOH B 565 1555 1555 2.15 LINK MG MG B 403 O HOH B 543 1555 1555 2.05 LINK MG MG B 403 O HOH B 690 1555 1555 2.06 SITE 1 AC1 13 GLU A 230 ILE A 250 SER A 251 ALA A 254 SITE 2 AC1 13 HOH A 568 ASP B 190 GLU B 194 MG B 402 SITE 3 AC1 13 MG B 403 NDP B 404 HOH B 543 HOH B 565 SITE 4 AC1 13 HOH B 690 SITE 1 AC2 5 ASP A 190 HOH A 574 9TY B 401 HOH B 537 SITE 2 AC2 5 HOH B 559 SITE 1 AC3 5 ASP A 190 GLU A 194 HOH A 531 HOH A 664 SITE 2 AC3 5 9TY B 401 SITE 1 AC4 6 VAL A 70 LYS A 71 ALA A 73 ASN A 101 SITE 2 AC4 6 HOH A 543 HOH A 654 SITE 1 AC5 2 ASN A 39 HOH A 781 SITE 1 AC6 36 TYR A 25 GLY A 26 SER A 27 GLN A 28 SITE 2 AC6 36 ILE A 47 ARG A 48 SER A 52 LEU A 79 SITE 3 AC6 36 LEU A 80 PRO A 81 ASP A 82 ILE A 84 SITE 4 AC6 36 GLN A 85 VAL A 88 ALA A 106 HIS A 107 SITE 5 AC6 36 PRO A 129 GLY A 131 PRO A 132 GLY A 133 SITE 6 AC6 36 HOH A 501 HOH A 506 HOH A 513 HOH A 518 SITE 7 AC6 36 HOH A 520 HOH A 533 HOH A 547 HOH A 556 SITE 8 AC6 36 HOH A 557 HOH A 600 HOH A 605 HOH A 664 SITE 9 AC6 36 SER B 249 ILE B 250 SER B 251 9TY B 401 SITE 1 AC7 13 ASP A 190 GLU A 194 MG A 402 MG A 403 SITE 2 AC7 13 NDP A 406 HOH A 531 HOH A 574 HOH A 664 SITE 3 AC7 13 GLU B 230 ILE B 250 SER B 251 ALA B 254 SITE 4 AC7 13 HOH B 559 SITE 1 AC8 6 9TY A 401 HOH A 519 HOH A 568 ASP B 190 SITE 2 AC8 6 MG B 403 HOH B 565 SITE 1 AC9 6 9TY A 401 ASP B 190 GLU B 194 MG B 402 SITE 2 AC9 6 HOH B 543 HOH B 690 SITE 1 AD1 41 SER A 249 ILE A 250 SER A 251 9TY A 401 SITE 2 AD1 41 TYR B 25 GLY B 26 SER B 27 GLN B 28 SITE 3 AD1 41 ILE B 47 ARG B 48 SER B 52 LEU B 79 SITE 4 AD1 41 LEU B 80 PRO B 81 ASP B 82 GLN B 85 SITE 5 AD1 41 VAL B 88 ALA B 106 HIS B 107 PRO B 129 SITE 6 AD1 41 GLY B 131 PRO B 132 GLY B 133 HOH B 509 SITE 7 AD1 41 HOH B 510 HOH B 514 HOH B 532 HOH B 544 SITE 8 AD1 41 HOH B 545 HOH B 591 HOH B 594 HOH B 617 SITE 9 AD1 41 HOH B 624 HOH B 632 HOH B 654 HOH B 670 SITE 10 AD1 41 HOH B 675 HOH B 684 HOH B 685 HOH B 690 SITE 11 AD1 41 HOH B 728 CRYST1 63.941 80.773 66.748 90.00 92.49 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015639 0.000000 0.000679 0.00000 SCALE2 0.000000 0.012380 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014996 0.00000