HEADER IMMUNE SYSTEM 08-JUN-17 5W3P TITLE ANTIBODY C706 IN COMPLEX WTH BETA-AMYLOID PEPTIDE 1-16 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY C706 FAB LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY C706 FAB HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: AMYLOID BETA A4 PROTEIN; COMPND 11 CHAIN: P; COMPND 12 FRAGMENT: RESIDUES 1-16; COMPND 13 SYNONYM: ABPP,APPI,APP,ALZHEIMER DISEASE AMYLOID PROTEIN,AMYLOID COMPND 14 PRECURSOR PROTEIN,BETA-AMYLOID PRECURSOR PROTEIN,CEREBRAL VASCULAR COMPND 15 AMYLOID PEPTIDE,CVAP,PREA4,PROTEASE NEXIN-II,PN-II; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.TEPLYAKOV,G.OBMOLOVA,G.L.GILLILAND REVDAT 2 04-OCT-23 5W3P 1 SEQRES REVDAT 1 20-SEP-17 5W3P 0 JRNL AUTH A.TEPLYAKOV,G.OBMOLOVA,G.L.GILLILAND JRNL TITL A COILED CONFORMATION OF AMYLOID-BETA RECOGNIZED BY ANTIBODY JRNL TITL 2 C706. JRNL REF ALZHEIMERS RES THER V. 9 66 2017 JRNL REFN ISSN 1758-9193 JRNL PMID 28830506 JRNL DOI 10.1186/S13195-017-0296-0 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 33453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1482 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 56.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3337 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 331 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.94000 REMARK 3 B22 (A**2) : -1.08000 REMARK 3 B33 (A**2) : 2.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.176 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.488 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3467 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4711 ; 1.179 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 441 ; 5.816 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;36.650 ;24.478 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 537 ;11.762 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.285 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 525 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2581 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1770 ; 2.418 ; 2.426 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2207 ; 3.641 ; 5.416 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1697 ; 3.933 ; 2.834 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5366 ; 7.812 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5W3P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228376. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34530 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 17.10 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.18800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3MCL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE, PH 4.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.60000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.43000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.94000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.43000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.60000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.94000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS L 212 REMARK 465 SER H 134 REMARK 465 LYS H 135 REMARK 465 SER H 136 REMARK 465 THR H 137 REMARK 465 SER H 138 REMARK 465 GLY H 139 REMARK 465 CYS H 222 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS H 220 CG CD CE NZ REMARK 470 SER H 221 OG REMARK 470 GLU P 11 CG CD OE1 OE2 REMARK 470 LYS P 16 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU H 184 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 50 -39.79 71.41 REMARK 500 ASN L 150 -4.55 70.02 REMARK 500 PRO H 132 129.14 -39.11 REMARK 500 ASP H 150 64.64 66.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 P 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 P 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MCL RELATED DB: PDB REMARK 900 C706 FAB IN THE UNBOUND FORM DBREF 5W3P L 1 212 PDB 5W3P 5W3P 1 212 DBREF 5W3P H 1 222 PDB 5W3P 5W3P 1 222 DBREF 5W3P P 0 17 UNP P05067 A4_HUMAN 671 688 SEQADV 5W3P ACE P 0 UNP P05067 MET 671 ACETYLATION SEQADV 5W3P NH2 P 17 UNP P05067 LEU 688 AMIDATION SEQRES 1 L 212 PCA ILE VAL LEU THR GLN SER PRO ALA ILE MET SER ALA SEQRES 2 L 212 SER PRO GLY GLU LYS VAL THR MET THR CYS SER ALA SER SEQRES 3 L 212 SER SER VAL SER TYR MET HIS TRP TYR GLN GLN LYS SER SEQRES 4 L 212 GLY THR SER PRO LYS ARG TRP ILE TYR ASP SER SER ARG SEQRES 5 L 212 LEU ALA SER GLY VAL PRO SER ARG PHE SER GLY GLY GLY SEQRES 6 L 212 SER GLY THR SER TYR SER LEU THR ILE SER ASN MET GLU SEQRES 7 L 212 ALA GLU ASP ALA ALA THR TYR PHE CYS GLN ASN TRP ARG SEQRES 8 L 212 SER SER PRO THR PHE GLY ALA GLY THR LYS LEU GLU LEU SEQRES 9 L 212 LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE PRO SEQRES 10 L 212 PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER VAL SEQRES 11 L 212 VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA LYS SEQRES 12 L 212 VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY ASN SEQRES 13 L 212 SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SER SEQRES 14 L 212 THR TYR SER LEU SER SER THR LEU THR LEU SER LYS ALA SEQRES 15 L 212 ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL THR SEQRES 16 L 212 HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE ASN SEQRES 17 L 212 ARG GLY GLU CYS SEQRES 1 H 222 PCA VAL GLN LEU GLN GLN SER GLY PRO GLU LEU MET LYS SEQRES 2 H 222 PRO GLY ALA SER VAL LYS ILE SER CYS LYS ALA THR GLY SEQRES 3 H 222 TYR THR PHE SER THR SER TRP ILE GLU TRP ILE LYS GLN SEQRES 4 H 222 ARG PRO GLY HIS GLY LEU GLU TRP ILE GLY GLU VAL LEU SEQRES 5 H 222 PRO GLY SER GLY LYS SER ASN HIS ASN ALA ASN PHE LYS SEQRES 6 H 222 GLY ARG ALA THR PHE THR ALA ASP THR ALA SER ASN THR SEQRES 7 H 222 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 H 222 ALA VAL TYR TYR CYS ALA ARG GLU GLY SER ASN ASN ASN SEQRES 9 H 222 ALA LEU ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 H 222 SER ALA ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 H 222 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 H 222 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 H 222 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 H 222 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 H 222 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 H 222 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 H 222 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 18 H 222 CYS SEQRES 1 P 18 ACE ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL SEQRES 2 P 18 HIS HIS GLN LYS NH2 HET PCA L 1 8 HET PCA H 1 8 HET ACE P 0 3 HET NH2 P 17 1 HET SO4 L 301 5 HET GOL L 302 6 HET GOL L 303 6 HET SO4 H 301 5 HET GOL H 302 6 HET SO4 P 901 5 HET SO4 P 902 5 HETNAM PCA PYROGLUTAMIC ACID HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 PCA 2(C5 H7 N O3) FORMUL 3 ACE C2 H4 O FORMUL 3 NH2 H2 N FORMUL 4 SO4 4(O4 S 2-) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 11 HOH *331(H2 O) HELIX 1 AA1 GLU L 78 ALA L 82 5 5 HELIX 2 AA2 SER L 119 LYS L 124 1 6 HELIX 3 AA3 LYS L 181 LYS L 186 1 6 HELIX 4 AA4 THR H 28 SER H 32 5 5 HELIX 5 AA5 ALA H 62 LYS H 65 5 4 HELIX 6 AA6 THR H 87 SER H 91 5 5 HELIX 7 AA7 SER H 162 ALA H 164 5 3 HELIX 8 AA8 SER H 193 THR H 197 5 5 SHEET 1 AA1 3 LEU L 4 SER L 7 0 SHEET 2 AA1 3 VAL L 19 VAL L 29 -1 O SER L 24 N THR L 5 SHEET 3 AA1 3 PHE L 61 ILE L 74 -1 O TYR L 70 N CYS L 23 SHEET 1 AA2 6 ILE L 10 ALA L 13 0 SHEET 2 AA2 6 THR L 100 LEU L 104 1 O LYS L 101 N MET L 11 SHEET 3 AA2 6 ALA L 83 GLN L 88 -1 N ALA L 83 O LEU L 102 SHEET 4 AA2 6 HIS L 33 GLN L 37 -1 N HIS L 33 O GLN L 88 SHEET 5 AA2 6 LYS L 44 TYR L 48 -1 O ILE L 47 N TRP L 34 SHEET 6 AA2 6 ARG L 52 LEU L 53 -1 O ARG L 52 N TYR L 48 SHEET 1 AA3 4 SER L 112 PHE L 116 0 SHEET 2 AA3 4 THR L 127 PHE L 137 -1 O VAL L 131 N PHE L 116 SHEET 3 AA3 4 TYR L 171 SER L 180 -1 O LEU L 177 N VAL L 130 SHEET 4 AA3 4 SER L 157 VAL L 161 -1 N GLN L 158 O THR L 176 SHEET 1 AA4 4 ALA L 151 LEU L 152 0 SHEET 2 AA4 4 LYS L 143 VAL L 148 -1 N VAL L 148 O ALA L 151 SHEET 3 AA4 4 VAL L 189 THR L 195 -1 O GLU L 193 N GLN L 145 SHEET 4 AA4 4 VAL L 203 ASN L 208 -1 O VAL L 203 N VAL L 194 SHEET 1 AA5 4 GLN H 3 GLN H 6 0 SHEET 2 AA5 4 VAL H 18 THR H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 AA5 4 THR H 78 LEU H 83 -1 O MET H 81 N ILE H 20 SHEET 4 AA5 4 ALA H 68 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 AA6 6 GLU H 10 MET H 12 0 SHEET 2 AA6 6 THR H 113 VAL H 117 1 O THR H 116 N MET H 12 SHEET 3 AA6 6 ALA H 92 GLU H 99 -1 N TYR H 94 O THR H 113 SHEET 4 AA6 6 ILE H 34 ARG H 40 -1 N ILE H 37 O TYR H 95 SHEET 5 AA6 6 GLY H 44 LEU H 52 -1 O GLU H 46 N LYS H 38 SHEET 6 AA6 6 LYS H 57 HIS H 60 -1 O LYS H 57 N LEU H 52 SHEET 1 AA7 4 GLU H 10 MET H 12 0 SHEET 2 AA7 4 THR H 113 VAL H 117 1 O THR H 116 N MET H 12 SHEET 3 AA7 4 ALA H 92 GLU H 99 -1 N TYR H 94 O THR H 113 SHEET 4 AA7 4 LEU H 106 TRP H 109 -1 O TYR H 108 N ARG H 98 SHEET 1 AA8 4 SER H 126 SER H 133 0 SHEET 2 AA8 4 THR H 141 TYR H 151 -1 O LEU H 147 N PHE H 128 SHEET 3 AA8 4 TYR H 182 PRO H 191 -1 O TYR H 182 N TYR H 151 SHEET 4 AA8 4 VAL H 169 THR H 171 -1 N HIS H 170 O VAL H 187 SHEET 1 AA9 4 SER H 126 SER H 133 0 SHEET 2 AA9 4 THR H 141 TYR H 151 -1 O LEU H 147 N PHE H 128 SHEET 3 AA9 4 TYR H 182 PRO H 191 -1 O TYR H 182 N TYR H 151 SHEET 4 AA9 4 VAL H 175 LEU H 176 -1 N VAL H 175 O SER H 183 SHEET 1 AB1 3 THR H 157 TRP H 160 0 SHEET 2 AB1 3 ILE H 201 HIS H 206 -1 O ASN H 203 N SER H 159 SHEET 3 AB1 3 THR H 211 LYS H 216 -1 O VAL H 213 N VAL H 204 SSBOND 1 CYS L 23 CYS L 87 1555 1555 2.04 SSBOND 2 CYS L 132 CYS L 192 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 4 CYS H 146 CYS H 202 1555 1555 2.03 LINK C PCA L 1 N ILE L 2 1555 1555 1.34 LINK C PCA H 1 N VAL H 2 1555 1555 1.33 LINK C ACE P 0 N ASP P 1 1555 1555 1.33 LINK C LYS P 16 N NH2 P 17 1555 1555 1.33 CISPEP 1 SER L 7 PRO L 8 0 -7.16 CISPEP 2 SER L 93 PRO L 94 0 1.10 CISPEP 3 TYR L 138 PRO L 139 0 3.42 CISPEP 4 PHE H 152 PRO H 153 0 -4.20 CISPEP 5 GLU H 154 PRO H 155 0 1.54 SITE 1 AC1 8 PRO H 9 HOH H 425 SER L 30 ARG L 91 SITE 2 AC1 8 HOH L 476 GLU P 11 VAL P 12 HIS P 14 SITE 1 AC2 10 GLN H 5 GLN H 6 SER H 7 GLY H 8 SITE 2 AC2 10 TRP L 90 ARG L 91 SER L 93 HOH L 410 SITE 3 AC2 10 HOH L 412 GLU P 3 SITE 1 AC3 11 PHE H 172 PRO H 173 SER H 183 LEU H 184 SITE 2 AC3 11 SER H 185 GLN L 158 SER L 160 SER L 174 SITE 3 AC3 11 SER L 175 THR L 176 HOH L 407 SITE 1 AC4 4 PCA H 1 VAL H 2 TYR H 108 HOH H 452 SITE 1 AC5 6 ARG H 98 SER H 101 TYR H 108 LYS H 212 SITE 2 AC5 6 HOH H 417 ASN L 150 SITE 1 AC6 6 HOH L 422 HOH L 448 HIS P 14 GLN P 15 SITE 2 AC6 6 LYS P 16 NH2 P 17 SITE 1 AC7 10 ASN H 104 ARG L 91 HOH L 408 ASP P 7 SITE 2 AC7 10 SER P 8 GLY P 9 TYR P 10 GLU P 11 SITE 3 AC7 10 HOH P1007 HOH P1013 CRYST1 65.200 69.880 104.860 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015337 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014310 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009537 0.00000 HETATM 1 N PCA L 1 49.257 -11.354 -6.729 1.00 23.18 N HETATM 2 CA PCA L 1 50.134 -11.803 -7.795 1.00 27.52 C HETATM 3 CB PCA L 1 50.513 -13.234 -7.414 1.00 26.15 C HETATM 4 CG PCA L 1 49.971 -13.466 -6.005 1.00 24.30 C HETATM 5 CD PCA L 1 49.152 -12.227 -5.741 1.00 28.60 C HETATM 6 OE PCA L 1 48.474 -12.070 -4.745 1.00 32.59 O HETATM 7 C PCA L 1 49.512 -11.711 -9.160 1.00 25.42 C HETATM 8 O PCA L 1 50.203 -11.347 -10.113 1.00 28.20 O