data_5W4J # _entry.id 5W4J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.321 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5W4J WWPDB D_1000228419 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5W4J _pdbx_database_status.recvd_initial_deposition_date 2017-06-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kreutzer, A.G.' 1 ? 'Nowick, J.S.' 2 0000-0002-2273-1029 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biochemistry _citation.journal_id_ASTM BICHAW _citation.journal_id_CSD 0033 _citation.journal_id_ISSN 1520-4995 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 56 _citation.language ? _citation.page_first 6061 _citation.page_last 6071 _citation.title 'A Hexamer of a Peptide Derived from A beta 16-36.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.biochem.7b00831 _citation.pdbx_database_id_PubMed 29028351 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kreutzer, A.G.' 1 ? primary 'Spencer, R.K.' 2 ? primary 'McKnelly, K.J.' 3 ? primary 'Yoo, S.' 4 ? primary 'Hamza, I.L.' 5 ? primary 'Salveson, P.J.' 6 ? primary 'Nowick, J.S.' 7 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5W4J _cell.details ? _cell.formula_units_Z ? _cell.length_a 30.590 _cell.length_a_esd ? _cell.length_b 46.939 _cell.length_b_esd ? _cell.length_c 64.302 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 24 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W4J _symmetry.cell_setting ? _symmetry.Int_Tables_number 17 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'A-beta 17_36 peptide: ORN-LYS-VAL-PHE-MEA-ALA-ALA-ASP-ORN-ALA-ILE-ILE-GLY-LEU-MET-VAL' 1738.165 6 ? ? ? ? 2 water nat water 18.015 63 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ORN)KVF(MEA)AAD(ORN)AIIGLMV' _entity_poly.pdbx_seq_one_letter_code_can AKVFFAADAAIIGLMV _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ORN n 1 2 LYS n 1 3 VAL n 1 4 PHE n 1 5 MEA n 1 6 ALA n 1 7 ALA n 1 8 ASP n 1 9 ORN n 1 10 ALA n 1 11 ILE n 1 12 ILE n 1 13 GLY n 1 14 LEU n 1 15 MET n 1 16 VAL n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5W4J _struct_ref.pdbx_db_accession 5W4J _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5W4J A 1 ? 16 ? 5W4J 1 ? 16 ? 1 16 2 1 5W4J B 1 ? 16 ? 5W4J 1 ? 16 ? 1 16 3 1 5W4J C 1 ? 16 ? 5W4J 1 ? 16 ? 1 16 4 1 5W4J D 1 ? 16 ? 5W4J 1 ? 16 ? 1 16 5 1 5W4J E 1 ? 16 ? 5W4J 1 ? 16 ? 1 16 6 1 5W4J F 1 ? 16 ? 5W4J 1 ? 16 ? 1 16 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MEA 'L-peptide linking' n N-METHYLPHENYLALANINE ? 'C10 H13 N O2' 179.216 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 ORN 'L-peptide linking' n L-ornithine ? 'C5 H12 N2 O2' 132.161 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5W4J _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 44.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 296.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.05 M HEPES buffer (pH 7.5), 0.2 M KCl, 37% Pentaerythritol propoxylate (5/4 PO/OH)' _exptl_crystal_grow.pdbx_pH_range 7.5-8.5 # _diffrn.ambient_environment ? _diffrn.ambient_temp 133 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU SATURN 92' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-02-02 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5W4J _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.08 _reflns.d_resolution_low 32.15 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5952 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.82 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 17.4 _reflns.pdbx_Rmerge_I_obs 0.007097 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 71.11 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.08 _reflns_shell.d_res_low 2.154 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 28.06 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 581 _reflns_shell.percent_possible_all 100.00 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.01986 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 12.6 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5W4J _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.080 _refine.ls_d_res_low 32.15 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5946 _refine.ls_number_reflns_R_free 1059 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.87 _refine.ls_percent_reflns_R_free 9.85 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2007 _refine.ls_R_factor_R_free 0.2431 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1960 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.42 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.18 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 726 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 63 _refine_hist.number_atoms_total 789 _refine_hist.d_res_high 2.080 _refine_hist.d_res_low 32.15 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 738 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.180 ? 972 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 26.252 ? 480 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.138 ? 120 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 114 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.0800 2.1747 . . 132 1199 100.00 . . . 0.2901 . 0.2151 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1747 2.2893 . . 136 1208 100.00 . . . 0.2691 . 0.2087 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2893 2.4328 . . 138 1216 100.00 . . . 0.2804 . 0.2205 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4328 2.6205 . . 130 1191 100.00 . . . 0.2530 . 0.2207 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6205 2.8842 . . 133 1214 100.00 . . . 0.2613 . 0.2234 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8842 3.3013 . . 136 1219 100.00 . . . 0.2217 . 0.2018 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3013 4.1585 . . 127 1219 100.00 . . . 0.2159 . 0.1745 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.1585 37.9188 . . 127 1222 99.00 . . . 0.2439 . 0.1820 . . . . . . . . . . # _struct.entry_id 5W4J _struct.title 'X-ray crystallographic structure of a beta-hairpin peptide mimic. (ORN)KLV(MEA)FAE(ORN)AIIGLMV.' _struct.pdbx_descriptor 'A-beta 17_36: ORN-CYS-VAL-PHE-PHE-CYS-GLU-ASP-ORN-ALA-ILE-ILE-SAR-LEU-ORN-VAL' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5W4J _struct_keywords.text 'amyloid, oligomer, PROTEIN FIBRIL, DE NOVO PROTEIN' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ORN 1 NE ? ? ? 1_555 A VAL 16 C ? ? A ORN 1 A VAL 16 1_555 ? ? ? ? ? ? ? 1.378 ? covale2 covale both ? A ORN 1 C ? ? ? 1_555 A LYS 2 N ? ? A ORN 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.371 ? covale3 covale both ? A PHE 4 C ? ? ? 1_555 A MEA 5 N ? ? A PHE 4 A MEA 5 1_555 ? ? ? ? ? ? ? 1.336 ? covale4 covale both ? A MEA 5 C ? ? ? 1_555 A ALA 6 N ? ? A MEA 5 A ALA 6 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale both ? A ASP 8 C ? ? ? 1_555 A ORN 9 NE ? ? A ASP 8 A ORN 9 1_555 ? ? ? ? ? ? ? 1.377 ? covale6 covale both ? A ORN 9 C ? ? ? 1_555 A ALA 10 N ? ? A ORN 9 A ALA 10 1_555 ? ? ? ? ? ? ? 1.371 ? covale7 covale both ? B ORN 1 NE ? ? ? 1_555 B VAL 16 C ? ? B ORN 1 B VAL 16 1_555 ? ? ? ? ? ? ? 1.377 ? covale8 covale both ? B ORN 1 C ? ? ? 1_555 B LYS 2 N ? ? B ORN 1 B LYS 2 1_555 ? ? ? ? ? ? ? 1.370 ? covale9 covale both ? B PHE 4 C ? ? ? 1_555 B MEA 5 N ? ? B PHE 4 B MEA 5 1_555 ? ? ? ? ? ? ? 1.333 ? covale10 covale both ? B MEA 5 C ? ? ? 1_555 B ALA 6 N ? ? B MEA 5 B ALA 6 1_555 ? ? ? ? ? ? ? 1.331 ? covale11 covale both ? B ASP 8 C ? ? ? 1_555 B ORN 9 NE ? ? B ASP 8 B ORN 9 1_555 ? ? ? ? ? ? ? 1.378 ? covale12 covale both ? B ORN 9 C ? ? ? 1_555 B ALA 10 N ? ? B ORN 9 B ALA 10 1_555 ? ? ? ? ? ? ? 1.374 ? covale13 covale both ? C ORN 1 NE ? ? ? 1_555 C VAL 16 C ? ? C ORN 1 C VAL 16 1_555 ? ? ? ? ? ? ? 1.378 ? covale14 covale both ? C ORN 1 C ? ? ? 1_555 C LYS 2 N ? ? C ORN 1 C LYS 2 1_555 ? ? ? ? ? ? ? 1.373 ? covale15 covale both ? C PHE 4 C ? ? ? 1_555 C MEA 5 N ? ? C PHE 4 C MEA 5 1_555 ? ? ? ? ? ? ? 1.338 ? covale16 covale both ? C MEA 5 C ? ? ? 1_555 C ALA 6 N ? ? C MEA 5 C ALA 6 1_555 ? ? ? ? ? ? ? 1.329 ? covale17 covale both ? C ASP 8 C ? ? ? 1_555 C ORN 9 NE ? ? C ASP 8 C ORN 9 1_555 ? ? ? ? ? ? ? 1.377 ? covale18 covale both ? C ORN 9 C ? ? ? 1_555 C ALA 10 N ? ? C ORN 9 C ALA 10 1_555 ? ? ? ? ? ? ? 1.372 ? covale19 covale both ? D ORN 1 NE ? ? ? 1_555 D VAL 16 C ? ? D ORN 1 D VAL 16 1_555 ? ? ? ? ? ? ? 1.378 ? covale20 covale both ? D ORN 1 C ? ? ? 1_555 D LYS 2 N ? ? D ORN 1 D LYS 2 1_555 ? ? ? ? ? ? ? 1.370 ? covale21 covale both ? D PHE 4 C ? ? ? 1_555 D MEA 5 N ? ? D PHE 4 D MEA 5 1_555 ? ? ? ? ? ? ? 1.337 ? covale22 covale both ? D MEA 5 C ? ? ? 1_555 D ALA 6 N ? ? D MEA 5 D ALA 6 1_555 ? ? ? ? ? ? ? 1.332 ? covale23 covale both ? D ASP 8 C ? ? ? 1_555 D ORN 9 NE ? ? D ASP 8 D ORN 9 1_555 ? ? ? ? ? ? ? 1.376 ? covale24 covale both ? D ORN 9 C ? ? ? 1_555 D ALA 10 N ? ? D ORN 9 D ALA 10 1_555 ? ? ? ? ? ? ? 1.364 ? covale25 covale both ? E ORN 1 NE ? ? ? 1_555 E VAL 16 C ? ? E ORN 1 E VAL 16 1_555 ? ? ? ? ? ? ? 1.379 ? covale26 covale both ? E ORN 1 C ? ? ? 1_555 E LYS 2 N ? ? E ORN 1 E LYS 2 1_555 ? ? ? ? ? ? ? 1.371 ? covale27 covale both ? E PHE 4 C ? ? ? 1_555 E MEA 5 N ? ? E PHE 4 E MEA 5 1_555 ? ? ? ? ? ? ? 1.334 ? covale28 covale both ? E MEA 5 C ? ? ? 1_555 E ALA 6 N ? ? E MEA 5 E ALA 6 1_555 ? ? ? ? ? ? ? 1.331 ? covale29 covale both ? E ASP 8 C ? ? ? 1_555 E ORN 9 NE ? ? E ASP 8 E ORN 9 1_555 ? ? ? ? ? ? ? 1.379 ? covale30 covale both ? E ORN 9 C ? ? ? 1_555 E ALA 10 N ? ? E ORN 9 E ALA 10 1_555 ? ? ? ? ? ? ? 1.374 ? covale31 covale both ? F ORN 1 NE ? ? ? 1_555 F VAL 16 C ? ? F ORN 1 F VAL 16 1_555 ? ? ? ? ? ? ? 1.378 ? covale32 covale both ? F ORN 1 C ? ? ? 1_555 F LYS 2 N ? ? F ORN 1 F LYS 2 1_555 ? ? ? ? ? ? ? 1.369 ? covale33 covale both ? F PHE 4 C ? ? ? 1_555 F MEA 5 N ? ? F PHE 4 F MEA 5 1_555 ? ? ? ? ? ? ? 1.337 ? covale34 covale both ? F MEA 5 C ? ? ? 1_555 F ALA 6 N ? ? F MEA 5 F ALA 6 1_555 ? ? ? ? ? ? ? 1.334 ? covale35 covale both ? F ASP 8 C ? ? ? 1_555 F ORN 9 NE ? ? F ASP 8 F ORN 9 1_555 ? ? ? ? ? ? ? 1.379 ? covale36 covale both ? F ORN 9 C ? ? ? 1_555 F ALA 10 N ? ? F ORN 9 F ALA 10 1_555 ? ? ? ? ? ? ? 1.372 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 4 ? AA3 ? 2 ? AA4 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 2 ? ALA A 7 ? LYS A 2 ALA A 7 AA1 2 ILE A 11 ? VAL A 16 ? ILE A 11 VAL A 16 AA2 1 LYS B 2 ? ALA B 7 ? LYS B 2 ALA B 7 AA2 2 ILE B 11 ? VAL B 16 ? ILE B 11 VAL B 16 AA2 3 ILE C 12 ? VAL C 16 ? ILE C 12 VAL C 16 AA2 4 LYS C 2 ? ALA C 7 ? LYS C 2 ALA C 7 AA3 1 LYS D 2 ? ALA D 7 ? LYS D 2 ALA D 7 AA3 2 ILE D 12 ? VAL D 16 ? ILE D 12 VAL D 16 AA4 1 LYS E 2 ? ALA E 7 ? LYS E 2 ALA E 7 AA4 2 ILE E 12 ? VAL E 16 ? ILE E 12 VAL E 16 AA4 3 GLY F 13 ? VAL F 16 ? GLY F 13 VAL F 16 AA4 4 LYS F 2 ? MEA F 5 ? LYS F 2 MEA F 5 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 4 ? N PHE A 4 O LEU A 14 ? O LEU A 14 AA2 1 2 N PHE B 4 ? N PHE B 4 O LEU B 14 ? O LEU B 14 AA2 2 3 N GLY B 13 ? N GLY B 13 O MET C 15 ? O MET C 15 AA2 3 4 O ILE C 12 ? O ILE C 12 N ALA C 6 ? N ALA C 6 AA3 1 2 N PHE D 4 ? N PHE D 4 O LEU D 14 ? O LEU D 14 AA4 1 2 N ALA E 6 ? N ALA E 6 O ILE E 12 ? O ILE E 12 AA4 2 3 N MET E 15 ? N MET E 15 O GLY F 13 ? O GLY F 13 AA4 3 4 O LEU F 14 ? O LEU F 14 N PHE F 4 ? N PHE F 4 # _atom_sites.entry_id 5W4J _atom_sites.fract_transf_matrix[1][1] 0.032691 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021304 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015552 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ORN 1 1 1 ORN ORN A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 MEA 5 5 5 MEA MEA A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 ORN 9 9 9 ORN ORN A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 MET 15 15 15 MET MET A . n A 1 16 VAL 16 16 16 VAL VAL A . n B 1 1 ORN 1 1 1 ORN ORN B . n B 1 2 LYS 2 2 2 LYS LYS B . n B 1 3 VAL 3 3 3 VAL VAL B . n B 1 4 PHE 4 4 4 PHE PHE B . n B 1 5 MEA 5 5 5 MEA MEA B . n B 1 6 ALA 6 6 6 ALA ALA B . n B 1 7 ALA 7 7 7 ALA ALA B . n B 1 8 ASP 8 8 8 ASP ASP B . n B 1 9 ORN 9 9 9 ORN ORN B . n B 1 10 ALA 10 10 10 ALA ALA B . n B 1 11 ILE 11 11 11 ILE ILE B . n B 1 12 ILE 12 12 12 ILE ILE B . n B 1 13 GLY 13 13 13 GLY GLY B . n B 1 14 LEU 14 14 14 LEU LEU B . n B 1 15 MET 15 15 15 MET MET B . n B 1 16 VAL 16 16 16 VAL VAL B . n C 1 1 ORN 1 1 1 ORN ORN C . n C 1 2 LYS 2 2 2 LYS LYS C . n C 1 3 VAL 3 3 3 VAL VAL C . n C 1 4 PHE 4 4 4 PHE PHE C . n C 1 5 MEA 5 5 5 MEA MEA C . n C 1 6 ALA 6 6 6 ALA ALA C . n C 1 7 ALA 7 7 7 ALA ALA C . n C 1 8 ASP 8 8 8 ASP ASP C . n C 1 9 ORN 9 9 9 ORN ORN C . n C 1 10 ALA 10 10 10 ALA ALA C . n C 1 11 ILE 11 11 11 ILE ILE C . n C 1 12 ILE 12 12 12 ILE ILE C . n C 1 13 GLY 13 13 13 GLY GLY C . n C 1 14 LEU 14 14 14 LEU LEU C . n C 1 15 MET 15 15 15 MET MET C . n C 1 16 VAL 16 16 16 VAL VAL C . n D 1 1 ORN 1 1 1 ORN ORN D . n D 1 2 LYS 2 2 2 LYS LYS D . n D 1 3 VAL 3 3 3 VAL VAL D . n D 1 4 PHE 4 4 4 PHE PHE D . n D 1 5 MEA 5 5 5 MEA MEA D . n D 1 6 ALA 6 6 6 ALA ALA D . n D 1 7 ALA 7 7 7 ALA ALA D . n D 1 8 ASP 8 8 8 ASP ASP D . n D 1 9 ORN 9 9 9 ORN ORN D . n D 1 10 ALA 10 10 10 ALA ALA D . n D 1 11 ILE 11 11 11 ILE ILE D . n D 1 12 ILE 12 12 12 ILE ILE D . n D 1 13 GLY 13 13 13 GLY GLY D . n D 1 14 LEU 14 14 14 LEU LEU D . n D 1 15 MET 15 15 15 MET MET D . n D 1 16 VAL 16 16 16 VAL VAL D . n E 1 1 ORN 1 1 1 ORN ORN E . n E 1 2 LYS 2 2 2 LYS LYS E . n E 1 3 VAL 3 3 3 VAL VAL E . n E 1 4 PHE 4 4 4 PHE PHE E . n E 1 5 MEA 5 5 5 MEA MEA E . n E 1 6 ALA 6 6 6 ALA ALA E . n E 1 7 ALA 7 7 7 ALA ALA E . n E 1 8 ASP 8 8 8 ASP ASP E . n E 1 9 ORN 9 9 9 ORN ORN E . n E 1 10 ALA 10 10 10 ALA ALA E . n E 1 11 ILE 11 11 11 ILE ILE E . n E 1 12 ILE 12 12 12 ILE ILE E . n E 1 13 GLY 13 13 13 GLY GLY E . n E 1 14 LEU 14 14 14 LEU LEU E . n E 1 15 MET 15 15 15 MET MET E . n E 1 16 VAL 16 16 16 VAL VAL E . n F 1 1 ORN 1 1 1 ORN ORN F . n F 1 2 LYS 2 2 2 LYS LYS F . n F 1 3 VAL 3 3 3 VAL VAL F . n F 1 4 PHE 4 4 4 PHE PHE F . n F 1 5 MEA 5 5 5 MEA MEA F . n F 1 6 ALA 6 6 6 ALA ALA F . n F 1 7 ALA 7 7 7 ALA ALA F . n F 1 8 ASP 8 8 8 ASP ASP F . n F 1 9 ORN 9 9 9 ORN ORN F . n F 1 10 ALA 10 10 10 ALA ALA F . n F 1 11 ILE 11 11 11 ILE ILE F . n F 1 12 ILE 12 12 12 ILE ILE F . n F 1 13 GLY 13 13 13 GLY GLY F . n F 1 14 LEU 14 14 14 LEU LEU F . n F 1 15 MET 15 15 15 MET MET F . n F 1 16 VAL 16 16 16 VAL VAL F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 HOH 1 101 83 HOH HOH A . G 2 HOH 2 102 60 HOH HOH A . G 2 HOH 3 103 86 HOH HOH A . G 2 HOH 4 104 50 HOH HOH A . G 2 HOH 5 105 55 HOH HOH A . G 2 HOH 6 106 87 HOH HOH A . G 2 HOH 7 107 38 HOH HOH A . G 2 HOH 8 108 35 HOH HOH A . G 2 HOH 9 109 7 HOH HOH A . G 2 HOH 10 110 8 HOH HOH A . G 2 HOH 11 111 69 HOH HOH A . G 2 HOH 12 112 65 HOH HOH A . G 2 HOH 13 113 61 HOH HOH A . G 2 HOH 14 114 78 HOH HOH A . G 2 HOH 15 115 67 HOH HOH A . G 2 HOH 16 116 51 HOH HOH A . G 2 HOH 17 117 62 HOH HOH A . H 2 HOH 1 101 36 HOH HOH B . H 2 HOH 2 102 31 HOH HOH B . H 2 HOH 3 103 42 HOH HOH B . H 2 HOH 4 104 32 HOH HOH B . H 2 HOH 5 105 28 HOH HOH B . H 2 HOH 6 106 71 HOH HOH B . H 2 HOH 7 107 39 HOH HOH B . H 2 HOH 8 108 70 HOH HOH B . H 2 HOH 9 109 77 HOH HOH B . H 2 HOH 10 110 54 HOH HOH B . H 2 HOH 11 111 29 HOH HOH B . I 2 HOH 1 101 11 HOH HOH C . I 2 HOH 2 102 44 HOH HOH C . I 2 HOH 3 103 45 HOH HOH C . I 2 HOH 4 104 81 HOH HOH C . I 2 HOH 5 105 47 HOH HOH C . I 2 HOH 6 106 33 HOH HOH C . I 2 HOH 7 107 34 HOH HOH C . I 2 HOH 8 108 88 HOH HOH C . J 2 HOH 1 101 26 HOH HOH D . J 2 HOH 2 102 85 HOH HOH D . J 2 HOH 3 103 30 HOH HOH D . J 2 HOH 4 104 72 HOH HOH D . J 2 HOH 5 105 73 HOH HOH D . J 2 HOH 6 106 76 HOH HOH D . K 2 HOH 1 101 63 HOH HOH E . K 2 HOH 2 102 27 HOH HOH E . K 2 HOH 3 103 64 HOH HOH E . K 2 HOH 4 104 80 HOH HOH E . K 2 HOH 5 105 46 HOH HOH E . L 2 HOH 1 101 49 HOH HOH F . L 2 HOH 2 102 74 HOH HOH F . L 2 HOH 3 103 75 HOH HOH F . L 2 HOH 4 104 58 HOH HOH F . L 2 HOH 5 105 52 HOH HOH F . L 2 HOH 6 106 48 HOH HOH F . L 2 HOH 7 107 66 HOH HOH F . L 2 HOH 8 108 79 HOH HOH F . L 2 HOH 9 109 53 HOH HOH F . L 2 HOH 10 110 40 HOH HOH F . L 2 HOH 11 111 57 HOH HOH F . L 2 HOH 12 112 43 HOH HOH F . L 2 HOH 13 113 56 HOH HOH F . L 2 HOH 14 114 82 HOH HOH F . L 2 HOH 15 115 68 HOH HOH F . L 2 HOH 16 116 84 HOH HOH F . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA tetrameric 4 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,D,G,J 2 1 B,C,E,F,H,I,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2490 ? 1 MORE -24 ? 1 'SSA (A^2)' 4140 ? 2 'ABSA (A^2)' 2430 ? 2 MORE -24 ? 2 'SSA (A^2)' 4230 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_556 x,-y+1/2,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 23.4695000000 0.0000000000 0.0000000000 -1.0000000000 64.3020000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 116 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-11-22 2 'Structure model' 1 1 2017-11-29 3 'Structure model' 2 0 2020-01-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Author supporting evidence' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' atom_site 3 3 'Structure model' pdbx_audit_support # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 3 'Structure model' '_atom_site.occupancy' 5 3 'Structure model' '_pdbx_audit_support.funding_organization' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 10.4286 17.4776 29.0567 0.2589 0.1586 0.1692 0.0539 0.0204 0.0111 8.6031 9.4502 2.1769 8.6627 3.4320 2.7786 -0.1137 -0.0630 -0.2820 0.0424 0.1239 -0.3232 -0.3241 -0.0338 -0.0343 'X-RAY DIFFRACTION' 2 ? refined 12.4424 16.3193 14.0533 0.1645 0.2526 0.1793 -0.0157 0.0060 -0.0042 2.4138 8.8858 6.3742 3.4140 -2.1527 -2.6756 0.0942 0.0858 0.2283 0.2312 0.0895 0.0813 -0.1184 0.3212 -0.1573 'X-RAY DIFFRACTION' 3 ? refined 2.5379 14.4248 17.7835 0.3556 0.3139 0.2237 -0.0722 -0.0440 0.0132 5.2986 5.6377 2.0021 5.1830 3.2049 3.2733 0.0615 0.8403 0.3200 0.2782 0.3372 0.7119 0.2016 -0.7570 0.0554 'X-RAY DIFFRACTION' 4 ? refined 5.4564 7.5935 16.7366 0.4782 0.3299 0.3190 -0.1534 0.0723 0.0334 7.4408 3.7417 5.7104 -3.5733 2.0343 0.3246 -0.2563 -0.2487 -0.9374 0.0139 0.3241 0.4696 1.0959 -0.4498 -0.3598 'X-RAY DIFFRACTION' 5 ? refined 13.5468 15.5019 39.2730 0.3104 0.2384 0.1954 -0.0047 -0.0022 0.0009 6.7049 3.8138 6.1660 -4.8201 1.9105 -2.7138 -0.4968 0.0013 0.2814 0.4233 0.4599 -0.0404 -0.4249 0.5749 -0.0673 'X-RAY DIFFRACTION' 6 ? refined 6.1185 16.1216 38.1013 0.4251 0.2475 0.2540 0.0904 -0.0124 -0.0982 8.0618 8.7784 5.4189 1.0000 -1.9999 2.3569 0.1314 0.1713 1.6572 -0.0120 -0.6128 0.0470 -1.0124 -0.7304 0.1273 'X-RAY DIFFRACTION' 7 ? refined 9.9846 18.1392 3.4608 0.2988 0.3981 0.2039 0.1410 0.0023 -0.1216 6.7032 9.0674 1.9850 -3.9800 -0.3222 -3.4048 -0.0137 0.0469 0.4060 0.6693 -0.2257 -0.9987 -1.3335 -0.5454 0.0173 'X-RAY DIFFRACTION' 8 ? refined 14.2216 12.4286 4.5424 0.3535 0.3667 0.3230 0.0235 0.0738 -0.0538 6.1887 8.3293 6.2814 0.3719 3.6907 -2.4451 0.5055 0.7107 -0.3684 -0.7010 -0.3836 -0.7942 -0.1819 0.5401 -0.1674 'X-RAY DIFFRACTION' 9 ? refined 3.1255 10.5054 6.4730 0.3900 0.4443 0.2904 -0.0271 -0.0560 0.0379 8.6466 2.3495 9.3207 0.7084 2.3138 -2.9564 -0.2183 0.1942 0.1934 -0.1198 0.1612 0.7854 0.2588 -1.4574 0.2871 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 16 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 1 through 16 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 1 through 8 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 9 through 16 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'D' and (resid 1 through 8 ) ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'D' and (resid 9 through 16 ) ; 'X-RAY DIFFRACTION' 7 7 ? ? ? ? ? ? ? ? ? ;chain 'E' and (resid 1 through 8 ) ; 'X-RAY DIFFRACTION' 8 8 ? ? ? ? ? ? ? ? ? ;chain 'E' and (resid 9 through 16 ) ; 'X-RAY DIFFRACTION' 9 9 ? ? ? ? ? ? ? ? ? ;chain 'F' and (resid 1 through 16 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.11.1_2575 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O F HOH 107 ? ? O F HOH 112 ? ? 1.91 2 1 O A HOH 117 ? ? O C HOH 107 ? ? 2.02 3 1 O F HOH 111 ? ? O F HOH 112 ? ? 2.05 4 1 O B HOH 104 ? ? O B HOH 109 ? ? 2.06 5 1 O B HOH 102 ? ? O B HOH 107 ? ? 2.08 6 1 O F HOH 101 ? ? O F HOH 110 ? ? 2.12 7 1 O B HOH 111 ? ? O F HOH 110 ? ? 2.13 8 1 O B HOH 109 ? ? O C HOH 106 ? ? 2.13 9 1 O C HOH 107 ? ? O C HOH 108 ? ? 2.14 10 1 O B HOH 109 ? ? O C HOH 107 ? ? 2.15 11 1 O A HOH 111 ? ? O A HOH 114 ? ? 2.15 12 1 O F HOH 115 ? ? O F HOH 116 ? ? 2.15 13 1 NZ A LYS 2 ? ? O A HOH 101 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 HN3 B ORN 9 ? ? 1_555 O E ALA 6 ? ? 4_665 1.55 2 1 O B HOH 107 ? ? 1_555 O F HOH 114 ? ? 4_565 2.17 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CG1 _pdbx_validate_rmsd_angle.auth_asym_id_1 E _pdbx_validate_rmsd_angle.auth_comp_id_1 VAL _pdbx_validate_rmsd_angle.auth_seq_id_1 16 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 E _pdbx_validate_rmsd_angle.auth_comp_id_2 VAL _pdbx_validate_rmsd_angle.auth_seq_id_2 16 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG2 _pdbx_validate_rmsd_angle.auth_asym_id_3 E _pdbx_validate_rmsd_angle.auth_comp_id_3 VAL _pdbx_validate_rmsd_angle.auth_seq_id_3 16 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 121.74 _pdbx_validate_rmsd_angle.angle_target_value 110.90 _pdbx_validate_rmsd_angle.angle_deviation 10.84 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ALA _pdbx_validate_torsion.auth_asym_id C _pdbx_validate_torsion.auth_seq_id 10 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -150.12 _pdbx_validate_torsion.psi 79.64 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 117 ? 7.06 . 2 1 O ? C HOH 107 ? 6.30 . 3 1 O ? C HOH 108 ? 6.38 . 4 1 O ? F HOH 116 ? 6.31 . # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM097562 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #