HEADER DE NOVO PROTEIN 11-JUN-17 5W4J TITLE X-RAY CRYSTALLOGRAPHIC STRUCTURE OF A BETA-HAIRPIN PEPTIDE MIMIC. TITLE 2 (ORN)KLV(MEA)FAE(ORN)AIIGLMV. COMPND MOL_ID: 1; COMPND 2 MOLECULE: A-BETA 17_36 PEPTIDE: ORN-LYS-VAL-PHE-MEA-ALA-ALA-ASP-ORN- COMPND 3 ALA-ILE-ILE-GLY-LEU-MET-VAL; COMPND 4 CHAIN: A, B, C, D, E, F; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS AMYLOID, OLIGOMER, PROTEIN FIBRIL, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.G.KREUTZER,J.S.NOWICK REVDAT 3 01-JAN-20 5W4J 1 ATOM REVDAT 2 29-NOV-17 5W4J 1 JRNL REVDAT 1 22-NOV-17 5W4J 0 JRNL AUTH A.G.KREUTZER,R.K.SPENCER,K.J.MCKNELLY,S.YOO,I.L.HAMZA, JRNL AUTH 2 P.J.SALVESON,J.S.NOWICK JRNL TITL A HEXAMER OF A PEPTIDE DERIVED FROM A BETA 16-36. JRNL REF BIOCHEMISTRY V. 56 6061 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 29028351 JRNL DOI 10.1021/ACS.BIOCHEM.7B00831 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 5946 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.9188 - 4.1585 0.99 1222 127 0.1820 0.2439 REMARK 3 2 4.1585 - 3.3013 1.00 1219 127 0.1745 0.2159 REMARK 3 3 3.3013 - 2.8842 1.00 1219 136 0.2018 0.2217 REMARK 3 4 2.8842 - 2.6205 1.00 1214 133 0.2234 0.2613 REMARK 3 5 2.6205 - 2.4328 1.00 1191 130 0.2207 0.2530 REMARK 3 6 2.4328 - 2.2893 1.00 1216 138 0.2205 0.2804 REMARK 3 7 2.2893 - 2.1747 1.00 1208 136 0.2087 0.2691 REMARK 3 8 2.1747 - 2.0800 1.00 1199 132 0.2151 0.2901 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 738 REMARK 3 ANGLE : 1.180 972 REMARK 3 CHIRALITY : 0.138 120 REMARK 3 PLANARITY : 0.005 114 REMARK 3 DIHEDRAL : 26.252 480 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4286 17.4776 29.0567 REMARK 3 T TENSOR REMARK 3 T11: 0.2589 T22: 0.1586 REMARK 3 T33: 0.1692 T12: 0.0539 REMARK 3 T13: 0.0204 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 8.6031 L22: 9.4502 REMARK 3 L33: 2.1769 L12: 8.6627 REMARK 3 L13: 3.4320 L23: 2.7786 REMARK 3 S TENSOR REMARK 3 S11: -0.1137 S12: -0.0630 S13: -0.2820 REMARK 3 S21: 0.0424 S22: 0.1239 S23: -0.3232 REMARK 3 S31: -0.3241 S32: -0.0338 S33: -0.0343 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4424 16.3193 14.0533 REMARK 3 T TENSOR REMARK 3 T11: 0.1645 T22: 0.2526 REMARK 3 T33: 0.1793 T12: -0.0157 REMARK 3 T13: 0.0060 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 2.4138 L22: 8.8858 REMARK 3 L33: 6.3742 L12: 3.4140 REMARK 3 L13: -2.1527 L23: -2.6756 REMARK 3 S TENSOR REMARK 3 S11: 0.0942 S12: 0.0858 S13: 0.2283 REMARK 3 S21: 0.2312 S22: 0.0895 S23: 0.0813 REMARK 3 S31: -0.1184 S32: 0.3212 S33: -0.1573 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5379 14.4248 17.7835 REMARK 3 T TENSOR REMARK 3 T11: 0.3556 T22: 0.3139 REMARK 3 T33: 0.2237 T12: -0.0722 REMARK 3 T13: -0.0440 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 5.2986 L22: 5.6377 REMARK 3 L33: 2.0021 L12: 5.1830 REMARK 3 L13: 3.2049 L23: 3.2733 REMARK 3 S TENSOR REMARK 3 S11: 0.0615 S12: 0.8403 S13: 0.3200 REMARK 3 S21: 0.2782 S22: 0.3372 S23: 0.7119 REMARK 3 S31: 0.2016 S32: -0.7570 S33: 0.0554 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 9 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4564 7.5935 16.7366 REMARK 3 T TENSOR REMARK 3 T11: 0.4782 T22: 0.3299 REMARK 3 T33: 0.3190 T12: -0.1534 REMARK 3 T13: 0.0723 T23: 0.0334 REMARK 3 L TENSOR REMARK 3 L11: 7.4408 L22: 3.7417 REMARK 3 L33: 5.7104 L12: -3.5733 REMARK 3 L13: 2.0343 L23: 0.3246 REMARK 3 S TENSOR REMARK 3 S11: -0.2563 S12: -0.2487 S13: -0.9374 REMARK 3 S21: 0.0139 S22: 0.3241 S23: 0.4696 REMARK 3 S31: 1.0959 S32: -0.4498 S33: -0.3598 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5468 15.5019 39.2730 REMARK 3 T TENSOR REMARK 3 T11: 0.3104 T22: 0.2384 REMARK 3 T33: 0.1954 T12: -0.0047 REMARK 3 T13: -0.0022 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 6.7049 L22: 3.8138 REMARK 3 L33: 6.1660 L12: -4.8201 REMARK 3 L13: 1.9105 L23: -2.7138 REMARK 3 S TENSOR REMARK 3 S11: -0.4968 S12: 0.0013 S13: 0.2814 REMARK 3 S21: 0.4233 S22: 0.4599 S23: -0.0404 REMARK 3 S31: -0.4249 S32: 0.5749 S33: -0.0673 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 9 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1185 16.1216 38.1013 REMARK 3 T TENSOR REMARK 3 T11: 0.4251 T22: 0.2475 REMARK 3 T33: 0.2540 T12: 0.0904 REMARK 3 T13: -0.0124 T23: -0.0982 REMARK 3 L TENSOR REMARK 3 L11: 8.0618 L22: 8.7784 REMARK 3 L33: 5.4189 L12: 1.0000 REMARK 3 L13: -1.9999 L23: 2.3569 REMARK 3 S TENSOR REMARK 3 S11: 0.1314 S12: 0.1713 S13: 1.6572 REMARK 3 S21: -0.0120 S22: -0.6128 S23: 0.0470 REMARK 3 S31: -1.0124 S32: -0.7304 S33: 0.1273 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9846 18.1392 3.4608 REMARK 3 T TENSOR REMARK 3 T11: 0.2988 T22: 0.3981 REMARK 3 T33: 0.2039 T12: 0.1410 REMARK 3 T13: 0.0023 T23: -0.1216 REMARK 3 L TENSOR REMARK 3 L11: 6.7032 L22: 9.0674 REMARK 3 L33: 1.9850 L12: -3.9800 REMARK 3 L13: -0.3222 L23: -3.4048 REMARK 3 S TENSOR REMARK 3 S11: -0.0137 S12: 0.0469 S13: 0.4060 REMARK 3 S21: 0.6693 S22: -0.2257 S23: -0.9987 REMARK 3 S31: -1.3335 S32: -0.5454 S33: 0.0173 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 9 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2216 12.4286 4.5424 REMARK 3 T TENSOR REMARK 3 T11: 0.3535 T22: 0.3667 REMARK 3 T33: 0.3230 T12: 0.0235 REMARK 3 T13: 0.0738 T23: -0.0538 REMARK 3 L TENSOR REMARK 3 L11: 6.1887 L22: 8.3293 REMARK 3 L33: 6.2814 L12: 0.3719 REMARK 3 L13: 3.6907 L23: -2.4451 REMARK 3 S TENSOR REMARK 3 S11: 0.5055 S12: 0.7107 S13: -0.3684 REMARK 3 S21: -0.7010 S22: -0.3836 S23: -0.7942 REMARK 3 S31: -0.1819 S32: 0.5401 S33: -0.1674 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1255 10.5054 6.4730 REMARK 3 T TENSOR REMARK 3 T11: 0.3900 T22: 0.4443 REMARK 3 T33: 0.2904 T12: -0.0271 REMARK 3 T13: -0.0560 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 8.6466 L22: 2.3495 REMARK 3 L33: 9.3207 L12: 0.7084 REMARK 3 L13: 2.3138 L23: -2.9564 REMARK 3 S TENSOR REMARK 3 S11: -0.2183 S12: 0.1942 S13: 0.1934 REMARK 3 S21: -0.1198 S22: 0.1612 S23: 0.7854 REMARK 3 S31: 0.2588 S32: -1.4574 S33: 0.2871 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5W4J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228419. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 133 REMARK 200 PH : 7.5-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 92 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5952 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 32.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 17.40 REMARK 200 R MERGE (I) : 0.00710 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 71.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.60 REMARK 200 R MERGE FOR SHELL (I) : 0.01986 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 28.06 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M HEPES BUFFER (PH 7.5), 0.2 M REMARK 280 KCL, 37% PENTAERYTHRITOL PROPOXYLATE (5/4 PO/OH), VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 296.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y+1/2,-Z REMARK 290 3555 -X,Y+1/2,-Z REMARK 290 4555 -X,-Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 23.46950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.46950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 23.46950 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 64.30200 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 116 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH F 107 O HOH F 112 1.91 REMARK 500 O HOH A 117 O HOH C 107 2.02 REMARK 500 O HOH F 111 O HOH F 112 2.05 REMARK 500 O HOH B 104 O HOH B 109 2.06 REMARK 500 O HOH B 102 O HOH B 107 2.08 REMARK 500 O HOH F 101 O HOH F 110 2.12 REMARK 500 O HOH B 111 O HOH F 110 2.13 REMARK 500 O HOH B 109 O HOH C 106 2.13 REMARK 500 O HOH C 107 O HOH C 108 2.14 REMARK 500 O HOH B 109 O HOH C 107 2.15 REMARK 500 O HOH A 111 O HOH A 114 2.15 REMARK 500 O HOH F 115 O HOH F 116 2.15 REMARK 500 NZ LYS A 2 O HOH A 101 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HN3 ORN B 9 O ALA E 6 4665 1.55 REMARK 500 O HOH B 107 O HOH F 114 4565 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL E 16 CG1 - CB - CG2 ANGL. DEV. = 10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA C 10 79.64 -150.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 117 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH C 107 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH C 108 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH F 116 DISTANCE = 6.31 ANGSTROMS DBREF 5W4J A 1 16 PDB 5W4J 5W4J 1 16 DBREF 5W4J B 1 16 PDB 5W4J 5W4J 1 16 DBREF 5W4J C 1 16 PDB 5W4J 5W4J 1 16 DBREF 5W4J D 1 16 PDB 5W4J 5W4J 1 16 DBREF 5W4J E 1 16 PDB 5W4J 5W4J 1 16 DBREF 5W4J F 1 16 PDB 5W4J 5W4J 1 16 SEQRES 1 A 16 ORN LYS VAL PHE MEA ALA ALA ASP ORN ALA ILE ILE GLY SEQRES 2 A 16 LEU MET VAL SEQRES 1 B 16 ORN LYS VAL PHE MEA ALA ALA ASP ORN ALA ILE ILE GLY SEQRES 2 B 16 LEU MET VAL SEQRES 1 C 16 ORN LYS VAL PHE MEA ALA ALA ASP ORN ALA ILE ILE GLY SEQRES 2 C 16 LEU MET VAL SEQRES 1 D 16 ORN LYS VAL PHE MEA ALA ALA ASP ORN ALA ILE ILE GLY SEQRES 2 D 16 LEU MET VAL SEQRES 1 E 16 ORN LYS VAL PHE MEA ALA ALA ASP ORN ALA ILE ILE GLY SEQRES 2 E 16 LEU MET VAL SEQRES 1 F 16 ORN LYS VAL PHE MEA ALA ALA ASP ORN ALA ILE ILE GLY SEQRES 2 F 16 LEU MET VAL HET ORN A 1 19 HET MEA A 5 23 HET ORN A 9 19 HET ORN B 1 19 HET MEA B 5 23 HET ORN B 9 19 HET ORN C 1 19 HET MEA C 5 23 HET ORN C 9 19 HET ORN D 1 19 HET MEA D 5 23 HET ORN D 9 19 HET ORN E 1 19 HET MEA E 5 23 HET ORN E 9 19 HET ORN F 1 19 HET MEA F 5 23 HET ORN F 9 19 HETNAM ORN L-ORNITHINE HETNAM MEA N-METHYLPHENYLALANINE FORMUL 1 ORN 12(C5 H12 N2 O2) FORMUL 1 MEA 6(C10 H13 N O2) FORMUL 7 HOH *63(H2 O) SHEET 1 AA1 2 LYS A 2 ALA A 7 0 SHEET 2 AA1 2 ILE A 11 VAL A 16 -1 O LEU A 14 N PHE A 4 SHEET 1 AA2 4 LYS B 2 ALA B 7 0 SHEET 2 AA2 4 ILE B 11 VAL B 16 -1 O LEU B 14 N PHE B 4 SHEET 3 AA2 4 ILE C 12 VAL C 16 -1 O MET C 15 N GLY B 13 SHEET 4 AA2 4 LYS C 2 ALA C 7 -1 N ALA C 6 O ILE C 12 SHEET 1 AA3 2 LYS D 2 ALA D 7 0 SHEET 2 AA3 2 ILE D 12 VAL D 16 -1 O LEU D 14 N PHE D 4 SHEET 1 AA4 4 LYS E 2 ALA E 7 0 SHEET 2 AA4 4 ILE E 12 VAL E 16 -1 O ILE E 12 N ALA E 6 SHEET 3 AA4 4 GLY F 13 VAL F 16 -1 O GLY F 13 N MET E 15 SHEET 4 AA4 4 LYS F 2 MEA F 5 -1 N PHE F 4 O LEU F 14 LINK NE ORN A 1 C VAL A 16 1555 1555 1.38 LINK C ORN A 1 N LYS A 2 1555 1555 1.37 LINK C PHE A 4 N MEA A 5 1555 1555 1.34 LINK C MEA A 5 N ALA A 6 1555 1555 1.33 LINK C ASP A 8 NE ORN A 9 1555 1555 1.38 LINK C ORN A 9 N ALA A 10 1555 1555 1.37 LINK NE ORN B 1 C VAL B 16 1555 1555 1.38 LINK C ORN B 1 N LYS B 2 1555 1555 1.37 LINK C PHE B 4 N MEA B 5 1555 1555 1.33 LINK C MEA B 5 N ALA B 6 1555 1555 1.33 LINK C ASP B 8 NE ORN B 9 1555 1555 1.38 LINK C ORN B 9 N ALA B 10 1555 1555 1.37 LINK NE ORN C 1 C VAL C 16 1555 1555 1.38 LINK C ORN C 1 N LYS C 2 1555 1555 1.37 LINK C PHE C 4 N MEA C 5 1555 1555 1.34 LINK C MEA C 5 N ALA C 6 1555 1555 1.33 LINK C ASP C 8 NE ORN C 9 1555 1555 1.38 LINK C ORN C 9 N ALA C 10 1555 1555 1.37 LINK NE ORN D 1 C VAL D 16 1555 1555 1.38 LINK C ORN D 1 N LYS D 2 1555 1555 1.37 LINK C PHE D 4 N MEA D 5 1555 1555 1.34 LINK C MEA D 5 N ALA D 6 1555 1555 1.33 LINK C ASP D 8 NE ORN D 9 1555 1555 1.38 LINK C ORN D 9 N ALA D 10 1555 1555 1.36 LINK NE ORN E 1 C VAL E 16 1555 1555 1.38 LINK C ORN E 1 N LYS E 2 1555 1555 1.37 LINK C PHE E 4 N MEA E 5 1555 1555 1.33 LINK C MEA E 5 N ALA E 6 1555 1555 1.33 LINK C ASP E 8 NE ORN E 9 1555 1555 1.38 LINK C ORN E 9 N ALA E 10 1555 1555 1.37 LINK NE ORN F 1 C VAL F 16 1555 1555 1.38 LINK C ORN F 1 N LYS F 2 1555 1555 1.37 LINK C PHE F 4 N MEA F 5 1555 1555 1.34 LINK C MEA F 5 N ALA F 6 1555 1555 1.33 LINK C ASP F 8 NE ORN F 9 1555 1555 1.38 LINK C ORN F 9 N ALA F 10 1555 1555 1.37 CRYST1 30.590 46.939 64.302 90.00 90.00 90.00 P 2 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032691 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021304 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015552 0.00000 HETATM 1 N ORN A 1 0.153 13.111 22.050 1.00 23.34 N ANISOU 1 N ORN A 1 3575 2596 2695 140 -330 728 N HETATM 2 CA ORN A 1 0.653 13.333 23.420 1.00 20.04 C ANISOU 2 CA ORN A 1 3001 2223 2391 437 -137 564 C HETATM 3 CB ORN A 1 1.652 12.238 23.801 1.00 18.34 C ANISOU 3 CB ORN A 1 2752 2167 2050 431 162 439 C HETATM 4 CG ORN A 1 0.973 10.884 24.109 1.00 19.73 C ANISOU 4 CG ORN A 1 2792 2427 2278 507 260 435 C HETATM 5 CD ORN A 1 0.374 10.841 25.523 1.00 20.33 C ANISOU 5 CD ORN A 1 2724 2565 2437 695 298 410 C HETATM 6 NE ORN A 1 1.411 10.908 26.529 1.00 19.63 N ANISOU 6 NE ORN A 1 2639 2509 2309 710 365 367 N HETATM 7 C ORN A 1 1.324 14.724 23.540 1.00 21.69 C ANISOU 7 C ORN A 1 3302 2306 2634 423 -279 570 C HETATM 8 O ORN A 1 1.580 15.406 22.549 1.00 22.35 O ANISOU 8 O ORN A 1 3593 2288 2612 146 -517 715 O HETATM 9 H1 ORN A 1 1.859 10.024 26.761 1.00 23.55 H HETATM 10 H2 ORN A 1 0.895 12.896 21.379 1.00 28.01 H HETATM 11 H3 ORN A 1 -0.507 12.333 21.981 1.00 28.01 H HETATM 12 HA ORN A 1 -0.231 13.338 24.064 1.00 24.05 H HETATM 13 HB2 ORN A 1 2.382 12.094 22.993 1.00 22.01 H HETATM 14 HB3 ORN A 1 2.159 12.557 24.722 1.00 22.01 H HETATM 15 HG2 ORN A 1 0.179 10.707 23.375 1.00 23.68 H HETATM 16 HG3 ORN A 1 1.721 10.087 24.022 1.00 23.68 H HETATM 17 HD2 ORN A 1 -0.167 9.898 25.645 1.00 24.40 H HETATM 18 HD3 ORN A 1 -0.301 11.693 25.648 1.00 24.40 H HETATM 19 HE1 ORN A 1 -0.337 13.920 21.662 1.00 28.01 H