HEADER VIRAL PROTEIN 12-JUN-17 5W4Q TITLE STRUCTURE OF THE R18A/E28A MUTANT OF THE HIV-1 CAPSID PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN P24; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 133-363; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: GAG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS CAPSID PROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.T.GRES,K.A.KIRBY,S.G.SARAFIANOS REVDAT 4 04-OCT-23 5W4Q 1 REMARK REVDAT 3 11-DEC-19 5W4Q 1 REMARK REVDAT 2 27-MAR-19 5W4Q 1 JRNL REVDAT 1 20-JUN-18 5W4Q 0 JRNL AUTH P.CRAVEUR,A.T.GRES,K.A.KIRBY,D.LIU,J.A.HAMMOND,Y.DENG, JRNL AUTH 2 S.FORLI,D.S.GOODSELL,J.R.WILLIAMSON,S.G.SARAFIANOS,A.J.OLSON JRNL TITL NOVEL INTERSUBUNIT INTERACTION CRITICAL FOR HIV-1 CORE JRNL TITL 2 ASSEMBLY DEFINES A POTENTIALLY TARGETABLE INHIBITOR BINDING JRNL TITL 3 POCKET. JRNL REF MBIO V. 10 2019 JRNL REFN ESSN 2150-7511 JRNL PMID 30862755 JRNL DOI 10.1128/MBIO.02858-18 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1-2575_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 12722 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.600 REMARK 3 FREE R VALUE TEST SET COUNT : 713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0444 - 3.9073 1.00 2464 164 0.1802 0.2108 REMARK 3 2 3.9073 - 3.1016 0.94 2317 114 0.1963 0.2646 REMARK 3 3 3.1016 - 2.7095 1.00 2426 123 0.2256 0.2491 REMARK 3 4 2.7095 - 2.4618 1.00 2405 161 0.2509 0.3072 REMARK 3 5 2.4618 - 2.2854 1.00 2397 151 0.3558 0.3961 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1727 REMARK 3 ANGLE : 0.564 2354 REMARK 3 CHIRALITY : 0.040 267 REMARK 3 PLANARITY : 0.004 305 REMARK 3 DIHEDRAL : 14.458 1060 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0368 -12.4063 15.7203 REMARK 3 T TENSOR REMARK 3 T11: 0.8120 T22: 0.7720 REMARK 3 T33: 0.6979 T12: -0.0755 REMARK 3 T13: -0.1463 T23: 0.0917 REMARK 3 L TENSOR REMARK 3 L11: 3.2258 L22: 0.0890 REMARK 3 L33: 0.1137 L12: -0.4730 REMARK 3 L13: -0.6043 L23: 0.0867 REMARK 3 S TENSOR REMARK 3 S11: 0.5628 S12: -1.3020 S13: 0.0513 REMARK 3 S21: 1.3045 S22: 0.2875 S23: -0.4649 REMARK 3 S31: -0.4776 S32: 0.6676 S33: 0.0713 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8266 -17.3178 -3.6249 REMARK 3 T TENSOR REMARK 3 T11: 0.3165 T22: 0.3283 REMARK 3 T33: 0.5981 T12: -0.0163 REMARK 3 T13: 0.0417 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: -0.0020 L22: 0.1425 REMARK 3 L33: 0.2004 L12: -0.0056 REMARK 3 L13: -0.0039 L23: -0.0402 REMARK 3 S TENSOR REMARK 3 S11: -0.0794 S12: 0.1071 S13: 0.5455 REMARK 3 S21: -0.3354 S22: -0.2499 S23: -0.5157 REMARK 3 S31: 0.2003 S32: 0.2229 S33: -0.0043 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3324 -20.9206 3.3507 REMARK 3 T TENSOR REMARK 3 T11: 0.4052 T22: 0.2884 REMARK 3 T33: 0.4195 T12: -0.0099 REMARK 3 T13: -0.0328 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.0376 L22: 0.1417 REMARK 3 L33: 0.0455 L12: -0.0660 REMARK 3 L13: 0.0217 L23: 0.0144 REMARK 3 S TENSOR REMARK 3 S11: -0.1385 S12: 0.1359 S13: 0.2324 REMARK 3 S21: -0.0202 S22: 0.1309 S23: 0.0052 REMARK 3 S31: -0.2854 S32: 0.1506 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9844 -35.9221 3.7530 REMARK 3 T TENSOR REMARK 3 T11: 0.5259 T22: 0.2845 REMARK 3 T33: 0.3314 T12: -0.0006 REMARK 3 T13: 0.0668 T23: 0.0650 REMARK 3 L TENSOR REMARK 3 L11: 0.2210 L22: 0.1072 REMARK 3 L33: 0.1139 L12: -0.0359 REMARK 3 L13: -0.1602 L23: 0.0182 REMARK 3 S TENSOR REMARK 3 S11: -0.2536 S12: 0.0457 S13: -0.1246 REMARK 3 S21: 0.1155 S22: 0.0659 S23: 0.0987 REMARK 3 S31: 0.4656 S32: -0.0256 S33: 0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6324 -29.3103 21.0331 REMARK 3 T TENSOR REMARK 3 T11: 0.8111 T22: 0.5490 REMARK 3 T33: 0.4359 T12: -0.0130 REMARK 3 T13: 0.0467 T23: -0.0619 REMARK 3 L TENSOR REMARK 3 L11: 0.0932 L22: 0.0463 REMARK 3 L33: 0.2384 L12: 0.0675 REMARK 3 L13: -0.1801 L23: -0.0712 REMARK 3 S TENSOR REMARK 3 S11: 0.1199 S12: -0.4975 S13: 0.1562 REMARK 3 S21: 0.7874 S22: -0.3072 S23: 0.0026 REMARK 3 S31: -0.1536 S32: 0.1500 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5721 -29.8700 1.9304 REMARK 3 T TENSOR REMARK 3 T11: 0.3284 T22: 0.3835 REMARK 3 T33: 0.4645 T12: 0.0481 REMARK 3 T13: 0.0403 T23: 0.0525 REMARK 3 L TENSOR REMARK 3 L11: 0.0749 L22: 0.3975 REMARK 3 L33: 0.0977 L12: -0.0274 REMARK 3 L13: -0.0787 L23: -0.0899 REMARK 3 S TENSOR REMARK 3 S11: -0.2708 S12: 0.0112 S13: 0.0333 REMARK 3 S21: 0.1349 S22: -0.2100 S23: -0.6603 REMARK 3 S31: 0.3663 S32: 0.3070 S33: -0.0097 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6168 -29.1706 -20.0025 REMARK 3 T TENSOR REMARK 3 T11: 0.5513 T22: 0.5747 REMARK 3 T33: 0.3552 T12: 0.0498 REMARK 3 T13: 0.0165 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 0.0415 L22: 0.0354 REMARK 3 L33: 0.0845 L12: -0.0017 REMARK 3 L13: 0.0284 L23: 0.0497 REMARK 3 S TENSOR REMARK 3 S11: 0.0475 S12: 0.1835 S13: -0.1058 REMARK 3 S21: -0.2421 S22: -0.1319 S23: 0.1514 REMARK 3 S31: 0.4611 S32: -0.2383 S33: -0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5124 -25.1692 -12.9586 REMARK 3 T TENSOR REMARK 3 T11: 0.4972 T22: 0.3649 REMARK 3 T33: 0.3996 T12: 0.0644 REMARK 3 T13: 0.0516 T23: 0.0559 REMARK 3 L TENSOR REMARK 3 L11: 0.0668 L22: 0.0197 REMARK 3 L33: 0.1011 L12: -0.0143 REMARK 3 L13: 0.0608 L23: 0.0162 REMARK 3 S TENSOR REMARK 3 S11: 0.0471 S12: 0.2673 S13: 0.4042 REMARK 3 S21: -0.3522 S22: -0.0773 S23: 0.3131 REMARK 3 S31: 0.1086 S32: 0.0203 S33: 0.0007 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0311 -34.5705 -6.9849 REMARK 3 T TENSOR REMARK 3 T11: 0.5138 T22: 0.4601 REMARK 3 T33: 0.5083 T12: 0.7096 REMARK 3 T13: 0.2068 T23: 0.1942 REMARK 3 L TENSOR REMARK 3 L11: 0.0003 L22: 0.0080 REMARK 3 L33: 0.0060 L12: 0.0040 REMARK 3 L13: 0.0038 L23: -0.0074 REMARK 3 S TENSOR REMARK 3 S11: 0.0193 S12: -0.1443 S13: -0.0034 REMARK 3 S21: 0.2494 S22: 0.1317 S23: -0.3445 REMARK 3 S31: 0.0875 S32: 0.0272 S33: 0.1023 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.5864 -25.6136 -14.9697 REMARK 3 T TENSOR REMARK 3 T11: 0.4931 T22: 0.6983 REMARK 3 T33: 0.4886 T12: 0.1501 REMARK 3 T13: 0.0071 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.1574 L22: 0.0684 REMARK 3 L33: 0.0231 L12: -0.0159 REMARK 3 L13: -0.0731 L23: 0.0096 REMARK 3 S TENSOR REMARK 3 S11: -0.4352 S12: 0.0763 S13: 0.0923 REMARK 3 S21: 0.0012 S22: 0.1350 S23: -0.1739 REMARK 3 S31: -0.0309 S32: 0.3687 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5W4Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228406. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033203 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12728 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 47.034 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.93000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: PDBID 4XFX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, NAI, SODIUM CACODYLATE, REMARK 280 GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -528.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 4 REMARK 465 ASN A 5 REMARK 465 LEU A 6 REMARK 465 GLY A 222 REMARK 465 GLY A 223 REMARK 465 PRO A 224 REMARK 465 GLY A 225 REMARK 465 HIS A 226 REMARK 465 LYS A 227 REMARK 465 ALA A 228 REMARK 465 ARG A 229 REMARK 465 VAL A 230 REMARK 465 LEU A 231 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 7 CG CD OE1 NE2 REMARK 470 GLN A 9 CG CD OE1 NE2 REMARK 470 MET A 10 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 31 -106.11 54.32 REMARK 500 GLN A 219 -74.54 -64.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 314 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4XFX RELATED DB: PDB REMARK 900 STRUCTURE OF THE NATIVE FULL-LENGTH HIV-1 CAPSID PROTEIN REMARK 900 RELATED ID: 5W4O RELATED DB: PDB REMARK 900 STRUCTURE OF THE R18A MUTANT OF THE HIV-1 CAPSID PROTEIN DBREF 5W4Q A 1 231 UNP B6DRA0 B6DRA0_9HIV1 133 363 SEQADV 5W4Q ALA A 18 UNP B6DRA0 ARG 150 ENGINEERED MUTATION SEQADV 5W4Q ALA A 28 UNP B6DRA0 GLU 160 ENGINEERED MUTATION SEQRES 1 A 231 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 A 231 ALA ILE SER PRO ALA THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 A 231 VAL ALA GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 A 231 PHE SER ALA LEU SER GLU GLY ALA THR PRO GLN ASP LEU SEQRES 5 A 231 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 A 231 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 A 231 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 A 231 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 A 231 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 A 231 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 A 231 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 A 231 MET TYR SER PRO THR SER ILE LEU ASP ILE ARG GLN GLY SEQRES 13 A 231 PRO LYS GLU PRO PHE ARG ASP TYR VAL ASP ARG PHE TYR SEQRES 14 A 231 LYS THR LEU ARG ALA GLU GLN ALA SER GLN GLU VAL LYS SEQRES 15 A 231 ASN TRP MET THR GLU THR LEU LEU VAL GLN ASN ALA ASN SEQRES 16 A 231 PRO ASP CYS LYS THR ILE LEU LYS ALA LEU GLY PRO GLY SEQRES 17 A 231 ALA THR LEU GLU GLU MET MET THR ALA CYS GLN GLY VAL SEQRES 18 A 231 GLY GLY PRO GLY HIS LYS ALA ARG VAL LEU HET IOD A 301 1 HET IOD A 302 1 HET IOD A 303 1 HET IOD A 304 1 HET IOD A 305 1 HET IOD A 306 1 HET IOD A 307 1 HET CL A 308 1 HET CL A 309 1 HET CL A 310 1 HET CL A 311 1 HET CL A 312 1 HET CL A 313 1 HET CL A 314 1 HETNAM IOD IODIDE ION HETNAM CL CHLORIDE ION FORMUL 2 IOD 7(I 1-) FORMUL 9 CL 7(CL 1-) FORMUL 16 HOH *93(H2 O) HELIX 1 AA1 SER A 16 ALA A 31 1 16 HELIX 2 AA2 GLU A 35 SER A 44 1 10 HELIX 3 AA3 THR A 48 THR A 58 1 11 HELIX 4 AA4 HIS A 62 HIS A 84 1 23 HELIX 5 AA5 ARG A 100 ALA A 105 1 6 HELIX 6 AA6 THR A 110 THR A 119 1 10 HELIX 7 AA7 PRO A 125 TYR A 145 1 21 HELIX 8 AA8 SER A 149 ILE A 153 5 5 HELIX 9 AA9 PRO A 160 GLN A 176 1 17 HELIX 10 AB1 SER A 178 ASN A 193 1 16 HELIX 11 AB2 ASN A 195 GLY A 206 1 12 HELIX 12 AB3 THR A 210 CYS A 218 1 9 SHEET 1 AA1 2 ILE A 2 VAL A 3 0 SHEET 2 AA1 2 VAL A 11 HIS A 12 -1 O VAL A 11 N VAL A 3 SSBOND 1 CYS A 198 CYS A 218 1555 1555 2.04 CISPEP 1 ASN A 121 PRO A 122 0 -0.18 SITE 1 AC1 3 ALA A 92 GLN A 95 LYS A 158 SITE 1 AC2 2 GLU A 35 GLY A 61 SITE 1 AC3 2 ARG A 162 GLN A 219 SITE 1 AC4 1 GLU A 29 SITE 1 AC5 2 ARG A 173 LYS A 182 SITE 1 AC6 2 GLY A 60 HIS A 62 SITE 1 AC7 1 CL A 311 SITE 1 AC8 3 ASN A 57 ARG A 173 HOH A 439 SITE 1 AC9 1 CL A 309 SITE 1 AD1 1 HOH A 452 SITE 1 AD2 3 ILE A 153 ARG A 167 HOH A 479 SITE 1 AD3 2 ALA A 31 HOH A 444 CRYST1 92.055 92.055 58.253 90.00 90.00 120.00 P 6 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010863 0.006272 0.000000 0.00000 SCALE2 0.000000 0.012544 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017166 0.00000