HEADER FLAVOPROTEIN 13-JUN-17 5W4Y TITLE CRYSTAL STRUCTURE OF RIBOFLAVIN LYASE (RCAE) WITH COFACTOR FMN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOFLAVIN LYASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RCAE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HERBICONIUX; SOURCE 3 ORGANISM_TAXID: 881616; SOURCE 4 STRAIN: YR403; SOURCE 5 GENE: RCAE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS CANNIBALISM, RIBOFLAVIN, SUPEROXIDE RADICAL, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.M.BHANDARI,Y.CHAKRABARTY,B.ZHAO,J.WOOD,P.LI,T.P.BEGLEY REVDAT 3 04-OCT-23 5W4Y 1 REMARK REVDAT 2 25-DEC-19 5W4Y 1 REMARK REVDAT 1 13-JUN-18 5W4Y 0 JRNL AUTH Y.CHAKRABARTY,D.M.BHANDARI,B.ZHAO,J.WOOD,P.LI,T.P.BEGLEY JRNL TITL CANNIBALISM AMONG THE FLAVINS: A NOVEL C-N BOND CLEAVAGE IN JRNL TITL 2 RIBOFLAVIN CATABOLISM MEDIATED BY FLAVIN-GENERATED JRNL TITL 3 SUPEROXIDE RADICAL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1-2155-000 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 81065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 4121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 64.0487 - 5.8360 1.00 2851 159 0.1651 0.2173 REMARK 3 2 5.8360 - 4.6326 1.00 2764 149 0.1346 0.1692 REMARK 3 3 4.6326 - 4.0471 1.00 2686 160 0.1205 0.1521 REMARK 3 4 4.0471 - 3.6771 1.00 2717 118 0.1290 0.1790 REMARK 3 5 3.6771 - 3.4136 1.00 2670 159 0.1475 0.1733 REMARK 3 6 3.4136 - 3.2123 1.00 2665 148 0.1573 0.1739 REMARK 3 7 3.2123 - 3.0515 1.00 2641 155 0.1565 0.1848 REMARK 3 8 3.0515 - 2.9186 1.00 2664 135 0.1508 0.1720 REMARK 3 9 2.9186 - 2.8063 1.00 2678 120 0.1632 0.1793 REMARK 3 10 2.8063 - 2.7094 1.00 2672 148 0.1665 0.2376 REMARK 3 11 2.7094 - 2.6247 1.00 2627 142 0.1647 0.2050 REMARK 3 12 2.6247 - 2.5497 1.00 2662 141 0.1526 0.2135 REMARK 3 13 2.5497 - 2.4826 1.00 2646 147 0.1531 0.1844 REMARK 3 14 2.4826 - 2.4220 1.00 2645 136 0.1502 0.2091 REMARK 3 15 2.4220 - 2.3669 1.00 2622 151 0.1512 0.2050 REMARK 3 16 2.3669 - 2.3166 1.00 2615 142 0.1537 0.1970 REMARK 3 17 2.3166 - 2.2702 1.00 2631 152 0.1596 0.1922 REMARK 3 18 2.2702 - 2.2274 1.00 2603 164 0.1924 0.2099 REMARK 3 19 2.2274 - 2.1876 1.00 2614 157 0.1685 0.2466 REMARK 3 20 2.1876 - 2.1505 1.00 2640 133 0.1710 0.2087 REMARK 3 21 2.1505 - 2.1158 1.00 2624 135 0.1734 0.2165 REMARK 3 22 2.1158 - 2.0833 1.00 2658 127 0.1727 0.1840 REMARK 3 23 2.0833 - 2.0526 1.00 2627 138 0.1973 0.2022 REMARK 3 24 2.0526 - 2.0237 1.00 2628 131 0.1868 0.2306 REMARK 3 25 2.0237 - 1.9964 1.00 2628 121 0.1951 0.2635 REMARK 3 26 1.9964 - 1.9704 1.00 2654 140 0.2034 0.2814 REMARK 3 27 1.9704 - 1.9458 1.00 2603 135 0.2158 0.2627 REMARK 3 28 1.9458 - 1.9224 1.00 2599 135 0.2637 0.2889 REMARK 3 29 1.9224 - 1.9000 0.99 2610 143 0.3196 0.3820 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7153 REMARK 3 ANGLE : 1.017 9757 REMARK 3 CHIRALITY : 0.058 1057 REMARK 3 PLANARITY : 0.008 1288 REMARK 3 DIHEDRAL : 17.034 4195 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.2995 6.8294 -7.0164 REMARK 3 T TENSOR REMARK 3 T11: 0.1848 T22: 0.2000 REMARK 3 T33: 0.1840 T12: 0.0022 REMARK 3 T13: -0.0368 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.6672 L22: 1.5475 REMARK 3 L33: 0.8492 L12: 0.7476 REMARK 3 L13: -0.1720 L23: 0.0125 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: -0.1310 S13: -0.0725 REMARK 3 S21: 0.0702 S22: -0.0647 S23: -0.1645 REMARK 3 S31: 0.0204 S32: 0.1179 S33: 0.0377 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9966 11.6390 -8.6035 REMARK 3 T TENSOR REMARK 3 T11: 0.1955 T22: 0.2739 REMARK 3 T33: 0.2991 T12: 0.0137 REMARK 3 T13: -0.0125 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 1.1413 L22: 2.7005 REMARK 3 L33: 1.6133 L12: 0.0366 REMARK 3 L13: -0.1891 L23: -0.0036 REMARK 3 S TENSOR REMARK 3 S11: 0.0702 S12: 0.0444 S13: 0.1124 REMARK 3 S21: 0.0276 S22: -0.0592 S23: 0.6076 REMARK 3 S31: -0.0495 S32: -0.3656 S33: -0.0690 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.3378 25.7268 0.2662 REMARK 3 T TENSOR REMARK 3 T11: 0.2347 T22: 0.2218 REMARK 3 T33: 0.2283 T12: -0.0395 REMARK 3 T13: 0.0145 T23: -0.0426 REMARK 3 L TENSOR REMARK 3 L11: 1.9787 L22: 1.7309 REMARK 3 L33: 1.0374 L12: -0.3510 REMARK 3 L13: 0.4110 L23: -0.4193 REMARK 3 S TENSOR REMARK 3 S11: 0.0574 S12: -0.0457 S13: 0.2902 REMARK 3 S21: 0.3067 S22: -0.0427 S23: -0.0492 REMARK 3 S31: -0.2079 S32: 0.0969 S33: 0.0440 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 289 THROUGH 369 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.3791 24.2987 -13.9369 REMARK 3 T TENSOR REMARK 3 T11: 0.1738 T22: 0.2417 REMARK 3 T33: 0.2419 T12: 0.0055 REMARK 3 T13: -0.0294 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.2311 L22: 1.6410 REMARK 3 L33: 2.0856 L12: 0.5306 REMARK 3 L13: -0.0582 L23: -0.0577 REMARK 3 S TENSOR REMARK 3 S11: 0.0151 S12: 0.0086 S13: -0.0670 REMARK 3 S21: -0.0237 S22: -0.0424 S23: -0.2821 REMARK 3 S31: -0.1719 S32: 0.1991 S33: 0.0059 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 370 THROUGH 425 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.4374 15.4126 10.0847 REMARK 3 T TENSOR REMARK 3 T11: 0.3703 T22: 0.4041 REMARK 3 T33: 0.2359 T12: -0.0774 REMARK 3 T13: -0.1035 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 2.0725 L22: 1.6825 REMARK 3 L33: 0.9732 L12: 0.6639 REMARK 3 L13: 0.6974 L23: 0.1920 REMARK 3 S TENSOR REMARK 3 S11: 0.1607 S12: -0.4838 S13: -0.0408 REMARK 3 S21: 0.5094 S22: -0.1642 S23: -0.2645 REMARK 3 S31: -0.0635 S32: 0.1835 S33: -0.0129 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 426 THROUGH 453 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5096 16.8693 6.1565 REMARK 3 T TENSOR REMARK 3 T11: 0.2929 T22: 0.3195 REMARK 3 T33: 0.2274 T12: -0.0402 REMARK 3 T13: 0.1094 T23: -0.0700 REMARK 3 L TENSOR REMARK 3 L11: 5.0316 L22: 6.1952 REMARK 3 L33: 6.1358 L12: -2.3312 REMARK 3 L13: 3.1994 L23: -1.1730 REMARK 3 S TENSOR REMARK 3 S11: 0.0756 S12: -0.5972 S13: 0.0250 REMARK 3 S21: 0.4988 S22: 0.0376 S23: 0.4279 REMARK 3 S31: -0.3415 S32: -0.3600 S33: -0.0576 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7194 -9.3479 -8.4217 REMARK 3 T TENSOR REMARK 3 T11: 0.2447 T22: 0.2296 REMARK 3 T33: 0.2247 T12: -0.0437 REMARK 3 T13: -0.0036 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.7313 L22: 2.2691 REMARK 3 L33: 1.4778 L12: 0.5303 REMARK 3 L13: -0.4617 L23: 0.0971 REMARK 3 S TENSOR REMARK 3 S11: 0.0090 S12: -0.1682 S13: -0.1617 REMARK 3 S21: 0.1990 S22: -0.0464 S23: 0.3557 REMARK 3 S31: 0.2343 S32: -0.2069 S33: 0.0203 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 137 THROUGH 268 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.7170 -6.5786 -26.4600 REMARK 3 T TENSOR REMARK 3 T11: 0.3358 T22: 0.2736 REMARK 3 T33: 0.1968 T12: -0.0080 REMARK 3 T13: -0.0204 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 1.1849 L22: 2.1259 REMARK 3 L33: 0.8113 L12: 1.2295 REMARK 3 L13: 0.2963 L23: 0.5594 REMARK 3 S TENSOR REMARK 3 S11: -0.1515 S12: 0.2398 S13: -0.0771 REMARK 3 S21: -0.3916 S22: 0.1084 S23: 0.0410 REMARK 3 S31: -0.0364 S32: -0.0309 S33: 0.0477 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 269 THROUGH 397 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0659 -22.5652 -13.0406 REMARK 3 T TENSOR REMARK 3 T11: 0.4507 T22: 0.4605 REMARK 3 T33: 0.5587 T12: -0.1538 REMARK 3 T13: 0.0159 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 2.3768 L22: 2.1108 REMARK 3 L33: 2.2092 L12: 0.0942 REMARK 3 L13: -1.1091 L23: 0.8265 REMARK 3 S TENSOR REMARK 3 S11: 0.0239 S12: 0.1275 S13: -0.1090 REMARK 3 S21: 0.0174 S22: -0.1273 S23: 0.6337 REMARK 3 S31: 0.2970 S32: -0.5564 S33: 0.0728 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 398 THROUGH 449 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.2373 -23.1720 -15.7080 REMARK 3 T TENSOR REMARK 3 T11: 0.4076 T22: 0.2442 REMARK 3 T33: 0.4209 T12: 0.0414 REMARK 3 T13: -0.0149 T23: -0.0668 REMARK 3 L TENSOR REMARK 3 L11: 1.9314 L22: 3.3485 REMARK 3 L33: 1.9837 L12: 1.2403 REMARK 3 L13: -0.3814 L23: -1.1940 REMARK 3 S TENSOR REMARK 3 S11: -0.0188 S12: 0.0354 S13: -0.4989 REMARK 3 S21: 0.0895 S22: 0.0631 S23: -0.3508 REMARK 3 S31: 0.3289 S32: 0.0636 S33: 0.0878 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5W4Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228450. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.2.1 REMARK 200 DATA SCALING SOFTWARE : IMOSFLM 7.2.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81065 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 64.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 18.60 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 18.60 REMARK 200 R MERGE FOR SHELL (I) : 1.75000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.10.1-2155-000 REMARK 200 STARTING MODEL: PDB ENTRY 3B9O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS-HCL, 45% POLYPROPYLENE REMARK 280 GLYCOL P400, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.12500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.90500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.73500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.90500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.12500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.73500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLY A 3 REMARK 465 ASN A 4 REMARK 465 THR A 5 REMARK 465 MET A 6 REMARK 465 LEU A 457 REMARK 465 VAL A 458 REMARK 465 GLY A 459 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 GLY B 3 REMARK 465 ASN B 4 REMARK 465 THR B 5 REMARK 465 GLN B 453 REMARK 465 SER B 454 REMARK 465 GLY B 455 REMARK 465 ALA B 456 REMARK 465 LEU B 457 REMARK 465 VAL B 458 REMARK 465 GLY B 459 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 205 HE ARG A 210 1.50 REMARK 500 O GLN B 341 H VAL B 344 1.53 REMARK 500 O ALA B 316 H GLY B 320 1.57 REMARK 500 OD1 ASP B 56 O HOH B 601 1.99 REMARK 500 OG SER B 99 O HOH B 602 2.09 REMARK 500 O HOH A 797 O HOH A 804 2.15 REMARK 500 O HOH A 735 O HOH A 810 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 25 75.49 -158.82 REMARK 500 THR A 140 40.62 -105.72 REMARK 500 THR A 141 142.26 46.36 REMARK 500 THR A 143 43.18 -94.98 REMARK 500 HIS A 362 2.13 -155.92 REMARK 500 ALA A 426 127.78 -170.10 REMARK 500 GLN A 453 98.68 -57.52 REMARK 500 SER A 454 71.22 60.63 REMARK 500 ALA B 25 76.96 -157.33 REMARK 500 ASP B 83 -66.95 -133.20 REMARK 500 THR B 140 -86.17 -95.71 REMARK 500 THR B 319 -34.49 -132.19 REMARK 500 HIS B 336 -80.10 -105.07 REMARK 500 THR B 337 -77.41 48.19 REMARK 500 GLU B 338 -156.39 -169.63 REMARK 500 LEU B 339 150.28 100.61 REMARK 500 GLN B 341 -107.28 34.73 REMARK 500 THR B 342 -17.08 -36.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 501 DBREF 5W4Y A -1 459 PDB 5W4Y 5W4Y -1 459 DBREF 5W4Y B -1 459 PDB 5W4Y 5W4Y -1 459 SEQRES 1 A 461 GLY HIS MET LYS GLY ASN THR MET LYS GLN LEU ARG PHE SEQRES 2 A 461 GLY LEU PHE GLU ASN ALA GLN THR ASN ASP SER GLY THR SEQRES 3 A 461 ALA THR TRP ARG HIS PRO ASP ASN GLN ARG HIS LEU PHE SEQRES 4 A 461 ASP THR LEU ASP TYR TRP ARG ASN ILE ALA GLN ILE CYS SEQRES 5 A 461 GLU ASP ALA GLY LEU ASP PHE VAL PHE LEU ALA ASP ALA SEQRES 6 A 461 TRP GLY TRP ALA ASP VAL ASN GLY GLU ARG PRO ASP ILE SEQRES 7 A 461 CYS ASP VAL GLU GLY LEU ASP LEU PRO ARG LEU ASP PRO SEQRES 8 A 461 ALA ILE VAL ALA ALA ALA LEU ILE ALA SER THR THR LYS SEQRES 9 A 461 LEU GLY LEU VAL MET THR GLY SER THR LEU LEU GLU GLN SEQRES 10 A 461 PRO TYR SER PHE ALA ARG ARG MET ALA SER LEU ASP HIS SEQRES 11 A 461 LEU SER LYS GLY ARG ILE GLY TRP ASN VAL VAL THR THR SEQRES 12 A 461 GLY THR ALA GLU THR ALA SER ALA ALA PHE GLY VAL PRO SEQRES 13 A 461 MET VAL ALA HIS ASP ASP ARG TYR ASP MET ALA ASP ASP SEQRES 14 A 461 PHE MET GLU LEU VAL TYR LYS LEU TRP GLU GLY ALA TRP SEQRES 15 A 461 GLU PRO ASP ALA LEU GLU ARG ASP LYS GLN GLY ARG TYR SEQRES 16 A 461 ALA ASP PRO ALA LYS VAL HIS ARG ILE ASP HIS GLU GLY SEQRES 17 A 461 PRO TYR PHE ARG SER ASN GLY TYR GLY ASN THR SER TYR SEQRES 18 A 461 SER PRO GLN GLY THR PRO VAL LEU PHE GLN ALA GLY SER SEQRES 19 A 461 SER GLU ARG GLY ARG GLN PHE GLY GLY ARG HIS GLY GLU SEQRES 20 A 461 CYS ILE PHE LEU GLY GLY ALA PRO ILE PRO LYS LEU ALA SEQRES 21 A 461 GLU GLN VAL ARG ALA ILE ARG ALA GLU ALA VAL ALA GLU SEQRES 22 A 461 GLY ARG ALA ALA ASP SER ILE LYS LEU MET ALA ALA PHE SEQRES 23 A 461 SER CYS VAL ILE ALA PRO THR HIS GLU GLU ALA VAL GLN SEQRES 24 A 461 LYS TYR GLN GLU VAL LEU ASP SER GLN THR PRO GLU VAL SEQRES 25 A 461 ALA VAL ALA SER TYR ALA TRP PHE THR GLY LEU ASP LEU SEQRES 26 A 461 SER SER TYR ASP PRO SER THR PRO MET SER GLU LEU HIS SEQRES 27 A 461 THR GLU LEU SER GLN THR GLN VAL ALA ARG PHE ALA GLY SEQRES 28 A 461 LEU THR VAL GLY ASP VAL LEU ALA ASP TRP HIS ALA HIS SEQRES 29 A 461 GLY VAL ARG THR LYS PRO VAL VAL GLY THR PRO GLU GLU SEQRES 30 A 461 VAL ALA ASP ALA ILE VAL GLU LEU ALA GLU GLY ALA ASP SEQRES 31 A 461 LEU ASP GLY PHE LEU LEU THR PRO VAL ILE GLN PRO GLY SEQRES 32 A 461 SER THR ILE ASP PHE ILE GLU HIS VAL LEU PRO ILE LEU SEQRES 33 A 461 ARG GLU ARG GLY VAL ALA ALA SER GLY TYR ASP ALA PRO SEQRES 34 A 461 THR LEU ARG GLU ARG LEU LEU GLY THR GLU THR PRO VAL SEQRES 35 A 461 LEU ARG GLU ASP HIS PRO GLY ALA GLY TYR ARG ALA GLN SEQRES 36 A 461 SER GLY ALA LEU VAL GLY SEQRES 1 B 461 GLY HIS MET LYS GLY ASN THR MET LYS GLN LEU ARG PHE SEQRES 2 B 461 GLY LEU PHE GLU ASN ALA GLN THR ASN ASP SER GLY THR SEQRES 3 B 461 ALA THR TRP ARG HIS PRO ASP ASN GLN ARG HIS LEU PHE SEQRES 4 B 461 ASP THR LEU ASP TYR TRP ARG ASN ILE ALA GLN ILE CYS SEQRES 5 B 461 GLU ASP ALA GLY LEU ASP PHE VAL PHE LEU ALA ASP ALA SEQRES 6 B 461 TRP GLY TRP ALA ASP VAL ASN GLY GLU ARG PRO ASP ILE SEQRES 7 B 461 CYS ASP VAL GLU GLY LEU ASP LEU PRO ARG LEU ASP PRO SEQRES 8 B 461 ALA ILE VAL ALA ALA ALA LEU ILE ALA SER THR THR LYS SEQRES 9 B 461 LEU GLY LEU VAL MET THR GLY SER THR LEU LEU GLU GLN SEQRES 10 B 461 PRO TYR SER PHE ALA ARG ARG MET ALA SER LEU ASP HIS SEQRES 11 B 461 LEU SER LYS GLY ARG ILE GLY TRP ASN VAL VAL THR THR SEQRES 12 B 461 GLY THR ALA GLU THR ALA SER ALA ALA PHE GLY VAL PRO SEQRES 13 B 461 MET VAL ALA HIS ASP ASP ARG TYR ASP MET ALA ASP ASP SEQRES 14 B 461 PHE MET GLU LEU VAL TYR LYS LEU TRP GLU GLY ALA TRP SEQRES 15 B 461 GLU PRO ASP ALA LEU GLU ARG ASP LYS GLN GLY ARG TYR SEQRES 16 B 461 ALA ASP PRO ALA LYS VAL HIS ARG ILE ASP HIS GLU GLY SEQRES 17 B 461 PRO TYR PHE ARG SER ASN GLY TYR GLY ASN THR SER TYR SEQRES 18 B 461 SER PRO GLN GLY THR PRO VAL LEU PHE GLN ALA GLY SER SEQRES 19 B 461 SER GLU ARG GLY ARG GLN PHE GLY GLY ARG HIS GLY GLU SEQRES 20 B 461 CYS ILE PHE LEU GLY GLY ALA PRO ILE PRO LYS LEU ALA SEQRES 21 B 461 GLU GLN VAL ARG ALA ILE ARG ALA GLU ALA VAL ALA GLU SEQRES 22 B 461 GLY ARG ALA ALA ASP SER ILE LYS LEU MET ALA ALA PHE SEQRES 23 B 461 SER CYS VAL ILE ALA PRO THR HIS GLU GLU ALA VAL GLN SEQRES 24 B 461 LYS TYR GLN GLU VAL LEU ASP SER GLN THR PRO GLU VAL SEQRES 25 B 461 ALA VAL ALA SER TYR ALA TRP PHE THR GLY LEU ASP LEU SEQRES 26 B 461 SER SER TYR ASP PRO SER THR PRO MET SER GLU LEU HIS SEQRES 27 B 461 THR GLU LEU SER GLN THR GLN VAL ALA ARG PHE ALA GLY SEQRES 28 B 461 LEU THR VAL GLY ASP VAL LEU ALA ASP TRP HIS ALA HIS SEQRES 29 B 461 GLY VAL ARG THR LYS PRO VAL VAL GLY THR PRO GLU GLU SEQRES 30 B 461 VAL ALA ASP ALA ILE VAL GLU LEU ALA GLU GLY ALA ASP SEQRES 31 B 461 LEU ASP GLY PHE LEU LEU THR PRO VAL ILE GLN PRO GLY SEQRES 32 B 461 SER THR ILE ASP PHE ILE GLU HIS VAL LEU PRO ILE LEU SEQRES 33 B 461 ARG GLU ARG GLY VAL ALA ALA SER GLY TYR ASP ALA PRO SEQRES 34 B 461 THR LEU ARG GLU ARG LEU LEU GLY THR GLU THR PRO VAL SEQRES 35 B 461 LEU ARG GLU ASP HIS PRO GLY ALA GLY TYR ARG ALA GLN SEQRES 36 B 461 SER GLY ALA LEU VAL GLY HET FMN A 501 50 HET FMN B 501 50 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 5 HOH *377(H2 O) HELIX 1 AA1 GLN A 33 PHE A 37 5 5 HELIX 2 AA2 THR A 39 GLY A 54 1 16 HELIX 3 AA3 ASP A 75 GLU A 80 1 6 HELIX 4 AA4 ASP A 88 ALA A 98 1 11 HELIX 5 AA5 GLN A 115 LYS A 131 1 17 HELIX 6 AA6 THR A 143 GLY A 152 1 10 HELIX 7 AA7 ALA A 157 GLY A 178 1 22 HELIX 8 AA8 ASP A 195 VAL A 199 5 5 HELIX 9 AA9 SER A 233 GLY A 244 1 12 HELIX 10 AB1 PRO A 253 GLU A 271 1 19 HELIX 11 AB2 ALA A 274 ILE A 278 5 5 HELIX 12 AB3 THR A 291 SER A 305 1 15 HELIX 13 AB4 GLU A 309 GLY A 320 1 12 HELIX 14 AB5 PRO A 331 LEU A 339 5 9 HELIX 15 AB6 SER A 340 PHE A 347 1 8 HELIX 16 AB7 THR A 351 GLY A 363 1 13 HELIX 17 AB8 THR A 372 ASP A 388 1 17 HELIX 18 AB9 PRO A 400 VAL A 410 1 11 HELIX 19 AC1 VAL A 410 ARG A 417 1 8 HELIX 20 AC2 THR A 428 GLY A 435 1 8 HELIX 21 AC3 HIS A 445 ARG A 451 5 7 HELIX 22 AC4 GLN B 33 PHE B 37 5 5 HELIX 23 AC5 THR B 39 GLY B 54 1 16 HELIX 24 AC6 PRO B 74 GLU B 80 1 7 HELIX 25 AC7 ASP B 88 ALA B 98 1 11 HELIX 26 AC8 GLN B 115 LYS B 131 1 17 HELIX 27 AC9 THR B 143 GLY B 152 1 10 HELIX 28 AD1 ALA B 157 GLY B 178 1 22 HELIX 29 AD2 ASP B 195 VAL B 199 5 5 HELIX 30 AD3 SER B 233 GLY B 244 1 12 HELIX 31 AD4 PRO B 253 GLU B 271 1 19 HELIX 32 AD5 ALA B 274 ILE B 278 5 5 HELIX 33 AD6 THR B 291 GLN B 306 1 16 HELIX 34 AD7 THR B 307 GLY B 320 1 14 HELIX 35 AD8 PRO B 331 LEU B 335 5 5 HELIX 36 AD9 SER B 340 ALA B 348 5 9 HELIX 37 AE1 THR B 351 GLY B 363 1 13 HELIX 38 AE2 THR B 372 ASP B 388 1 17 HELIX 39 AE3 PRO B 400 VAL B 410 1 11 HELIX 40 AE4 VAL B 410 ARG B 417 1 8 HELIX 41 AE5 THR B 428 GLY B 435 1 8 HELIX 42 AE6 HIS B 445 ARG B 451 5 7 SHEET 1 AA1 9 ARG A 10 ASN A 16 0 SHEET 2 AA1 9 PHE A 57 ALA A 61 1 O PHE A 59 N LEU A 13 SHEET 3 AA1 9 GLY A 104 SER A 110 1 O VAL A 106 N LEU A 60 SHEET 4 AA1 9 ILE A 134 VAL A 139 1 O ASN A 137 N MET A 107 SHEET 5 AA1 9 VAL A 226 GLN A 229 1 O PHE A 228 N TRP A 136 SHEET 6 AA1 9 CYS A 246 LEU A 249 1 N CYS A 246 O LEU A 227 SHEET 7 AA1 9 LYS A 279 PHE A 284 1 O ALA A 283 N LEU A 249 SHEET 8 AA1 9 GLY A 391 LEU A 394 1 O LEU A 393 N ALA A 282 SHEET 9 AA1 9 ARG A 10 ASN A 16 1 N GLY A 12 O LEU A 394 SHEET 1 AA2 2 ILE A 202 GLU A 205 0 SHEET 2 AA2 2 ARG A 210 GLY A 213 -1 O GLY A 213 N ILE A 202 SHEET 1 AA3 2 CYS A 286 ILE A 288 0 SHEET 2 AA3 2 VAL A 369 GLY A 371 1 O GLY A 371 N VAL A 287 SHEET 1 AA4 9 ARG B 10 ASN B 16 0 SHEET 2 AA4 9 PHE B 57 ALA B 61 1 O PHE B 59 N LEU B 13 SHEET 3 AA4 9 GLY B 104 SER B 110 1 O VAL B 106 N LEU B 60 SHEET 4 AA4 9 ILE B 134 VAL B 139 1 O ASN B 137 N MET B 107 SHEET 5 AA4 9 VAL B 226 GLN B 229 1 O VAL B 226 N TRP B 136 SHEET 6 AA4 9 CYS B 246 LEU B 249 1 N CYS B 246 O LEU B 227 SHEET 7 AA4 9 LYS B 279 PHE B 284 1 O LYS B 279 N ILE B 247 SHEET 8 AA4 9 GLY B 391 LEU B 394 1 O LEU B 393 N PHE B 284 SHEET 9 AA4 9 ARG B 10 ASN B 16 1 N GLY B 12 O LEU B 394 SHEET 1 AA5 2 ILE B 202 GLU B 205 0 SHEET 2 AA5 2 ARG B 210 GLY B 213 -1 O GLY B 213 N ILE B 202 SHEET 1 AA6 2 CYS B 286 ILE B 288 0 SHEET 2 AA6 2 VAL B 369 GLY B 371 1 O VAL B 369 N VAL B 287 CISPEP 1 LEU A 84 PRO A 85 0 -3.50 CISPEP 2 GLN A 399 PRO A 400 0 -0.29 CISPEP 3 LEU B 84 PRO B 85 0 -5.32 CISPEP 4 GLN B 399 PRO B 400 0 -1.03 SITE 1 AC1 13 ALA A 61 ASP A 62 THR A 108 VAL A 139 SITE 2 AC1 13 GLY A 142 HIS A 158 TYR A 162 ALA A 230 SITE 3 AC1 13 GLY A 231 SER A 232 SER A 233 GLY A 236 SITE 4 AC1 13 HOH A 630 SITE 1 AC2 12 ALA B 61 ASP B 62 THR B 108 GLY B 142 SITE 2 AC2 12 HIS B 158 TYR B 162 ALA B 230 GLY B 231 SITE 3 AC2 12 SER B 232 SER B 233 GLY B 236 HOH B 693 CRYST1 76.250 113.470 117.810 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013115 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008813 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008488 0.00000