HEADER CELL CYCLE 14-JUN-17 5W55 TITLE CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX TITLE 2 WITH THE INHIBITOR JWG048 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 42-168; COMPND 5 SYNONYM: PROTEIN HUNK1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD4, HUNK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, INHIBITOR, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR X.XU,S.C.BLACKLOW REVDAT 2 04-OCT-23 5W55 1 REMARK REVDAT 1 20-JUN-18 5W55 0 JRNL AUTH X.XU,S.C.BLACKLOW JRNL TITL CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN JRNL TITL 2 COMPLEX WITH THE INHIBITOR JWG048 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 28018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0932 - 2.9171 0.98 2792 147 0.1706 0.1894 REMARK 3 2 2.9171 - 2.3155 0.99 2680 150 0.1604 0.1963 REMARK 3 3 2.3155 - 2.0228 1.00 2700 149 0.1466 0.1648 REMARK 3 4 2.0228 - 1.8379 1.00 2661 141 0.1589 0.1953 REMARK 3 5 1.8379 - 1.7061 1.00 2689 123 0.1632 0.2103 REMARK 3 6 1.7061 - 1.6055 1.00 2661 125 0.1739 0.2086 REMARK 3 7 1.6055 - 1.5251 1.00 2643 154 0.1817 0.1942 REMARK 3 8 1.5251 - 1.4587 1.00 2646 142 0.2049 0.2428 REMARK 3 9 1.4587 - 1.4026 1.00 2630 135 0.2463 0.2684 REMARK 3 10 1.4026 - 1.3542 0.95 2534 116 0.2818 0.2913 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1105 REMARK 3 ANGLE : 1.144 1506 REMARK 3 CHIRALITY : 0.068 157 REMARK 3 PLANARITY : 0.008 193 REMARK 3 DIHEDRAL : 20.374 428 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9001 -11.7672 -20.0521 REMARK 3 T TENSOR REMARK 3 T11: 0.2059 T22: 0.2760 REMARK 3 T33: 0.1888 T12: -0.0249 REMARK 3 T13: 0.0595 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 8.7473 L22: 8.8426 REMARK 3 L33: 2.3950 L12: 2.0054 REMARK 3 L13: -2.0409 L23: 1.2128 REMARK 3 S TENSOR REMARK 3 S11: 0.0785 S12: 0.1555 S13: -0.2775 REMARK 3 S21: 0.3469 S22: 0.1217 S23: -0.0753 REMARK 3 S31: 0.0851 S32: 1.0370 S33: 0.3575 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0294 -5.9487 -31.1221 REMARK 3 T TENSOR REMARK 3 T11: 0.2154 T22: 0.2775 REMARK 3 T33: 0.2070 T12: -0.0090 REMARK 3 T13: 0.0235 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 6.4129 L22: 1.9596 REMARK 3 L33: 2.2469 L12: -1.2931 REMARK 3 L13: 1.9259 L23: -0.5129 REMARK 3 S TENSOR REMARK 3 S11: 0.1658 S12: 0.8197 S13: 0.1017 REMARK 3 S21: -0.2388 S22: -0.2351 S23: -0.0537 REMARK 3 S31: -0.1147 S32: 0.3719 S33: 0.0413 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4823 -2.4758 -20.7320 REMARK 3 T TENSOR REMARK 3 T11: 0.1941 T22: 0.1619 REMARK 3 T33: 0.2453 T12: 0.0096 REMARK 3 T13: -0.0027 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 6.4629 L22: 2.6678 REMARK 3 L33: 5.3199 L12: -2.1181 REMARK 3 L13: 2.5311 L23: 0.3906 REMARK 3 S TENSOR REMARK 3 S11: -0.2281 S12: -0.1156 S13: 0.1120 REMARK 3 S21: -0.0617 S22: 0.0565 S23: -0.0061 REMARK 3 S31: -0.1095 S32: -0.1466 S33: 0.0756 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6527 -2.2946 -12.2412 REMARK 3 T TENSOR REMARK 3 T11: 0.2688 T22: 0.1970 REMARK 3 T33: 0.2028 T12: 0.0412 REMARK 3 T13: -0.0206 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 2.7268 L22: 2.0312 REMARK 3 L33: 5.6185 L12: -0.2577 REMARK 3 L13: 3.3470 L23: 1.4125 REMARK 3 S TENSOR REMARK 3 S11: -0.3833 S12: -0.1649 S13: 0.3709 REMARK 3 S21: 0.1818 S22: 0.1384 S23: 0.1553 REMARK 3 S31: -0.8707 S32: -0.4437 S33: 0.1890 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9851 -5.5080 -4.8809 REMARK 3 T TENSOR REMARK 3 T11: 0.2691 T22: 0.1886 REMARK 3 T33: 0.1619 T12: -0.0019 REMARK 3 T13: -0.0111 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 6.0729 L22: 8.6968 REMARK 3 L33: 6.9718 L12: 0.1670 REMARK 3 L13: -0.8283 L23: -1.5822 REMARK 3 S TENSOR REMARK 3 S11: 0.0356 S12: -0.2442 S13: 0.1237 REMARK 3 S21: 0.5884 S22: -0.0727 S23: 0.1740 REMARK 3 S31: -0.4527 S32: -0.2104 S33: -0.0610 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5659 -11.6809 -10.8298 REMARK 3 T TENSOR REMARK 3 T11: 0.1672 T22: 0.3229 REMARK 3 T33: 0.1627 T12: -0.0333 REMARK 3 T13: 0.0017 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 6.7162 L22: 8.4189 REMARK 3 L33: 5.7944 L12: -3.5919 REMARK 3 L13: -0.7950 L23: -0.7920 REMARK 3 S TENSOR REMARK 3 S11: -0.1854 S12: -0.4466 S13: 0.0764 REMARK 3 S21: 0.1693 S22: 0.1232 S23: -0.7723 REMARK 3 S31: 0.0408 S32: 1.0688 S33: 0.0656 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4383 -11.3648 -18.4087 REMARK 3 T TENSOR REMARK 3 T11: 0.1373 T22: 0.1565 REMARK 3 T33: 0.1561 T12: -0.0334 REMARK 3 T13: 0.0138 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 3.8361 L22: 3.0789 REMARK 3 L33: 3.1730 L12: -2.8584 REMARK 3 L13: 1.8871 L23: -2.0346 REMARK 3 S TENSOR REMARK 3 S11: -0.0430 S12: -0.0529 S13: 0.0748 REMARK 3 S21: 0.0208 S22: 0.0504 S23: -0.1427 REMARK 3 S31: -0.1172 S32: 0.1442 S33: 0.0613 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8366 -13.1349 -19.4105 REMARK 3 T TENSOR REMARK 3 T11: 0.1420 T22: 0.1562 REMARK 3 T33: 0.1768 T12: -0.0114 REMARK 3 T13: 0.0050 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.4822 L22: 2.9742 REMARK 3 L33: 3.9025 L12: -1.6037 REMARK 3 L13: 1.6154 L23: -2.7883 REMARK 3 S TENSOR REMARK 3 S11: 0.0940 S12: 0.0614 S13: -0.0823 REMARK 3 S21: -0.0784 S22: -0.0259 S23: 0.1168 REMARK 3 S31: 0.1016 S32: -0.0596 S33: -0.1200 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3510 -21.2732 -1.7282 REMARK 3 T TENSOR REMARK 3 T11: 0.3006 T22: 0.2316 REMARK 3 T33: 0.1989 T12: -0.0651 REMARK 3 T13: 0.0152 T23: 0.0385 REMARK 3 L TENSOR REMARK 3 L11: 6.1703 L22: 2.0788 REMARK 3 L33: 2.1646 L12: 3.3745 REMARK 3 L13: -3.2294 L23: -1.4323 REMARK 3 S TENSOR REMARK 3 S11: 0.0177 S12: -0.4724 S13: -0.1672 REMARK 3 S21: 0.8823 S22: -0.2852 S23: 0.2839 REMARK 3 S31: 0.0668 S32: 0.4121 S33: 0.3110 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4860 -11.7040 -8.0478 REMARK 3 T TENSOR REMARK 3 T11: 0.2338 T22: 0.2495 REMARK 3 T33: 0.2593 T12: 0.0179 REMARK 3 T13: 0.0760 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 4.7418 L22: 2.2842 REMARK 3 L33: 4.1806 L12: -1.6802 REMARK 3 L13: 2.7169 L23: -1.3047 REMARK 3 S TENSOR REMARK 3 S11: 0.1088 S12: -0.2774 S13: -0.3985 REMARK 3 S21: 0.2846 S22: 0.1311 S23: 0.4471 REMARK 3 S31: -0.0638 S32: -0.5875 S33: -0.1040 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5W55 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228448. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28061 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 56.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.94500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4WIV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM NITRATE, 5% ETHYLENE REMARK 280 GLYCOL, 18% (W/V) PEG3350, VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.70550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.37750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.67550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.37750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.70550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.67550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 42 REMARK 465 THR A 166 REMARK 465 GLU A 167 REMARK 465 GLU A 168 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 GLU A 163 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 111 OE2 GLU A 115 1.57 REMARK 500 O HOH A 311 O HOH A 411 1.90 REMARK 500 O HOH A 339 O HOH A 420 1.95 REMARK 500 O HOH A 395 O HOH A 411 2.04 REMARK 500 O HOH A 338 O HOH A 438 2.06 REMARK 500 O HOH A 365 O HOH A 419 2.13 REMARK 500 O HOH A 379 O HOH A 412 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 401 O HOH A 408 4444 1.87 REMARK 500 O HOH A 373 O HOH A 399 3544 1.88 REMARK 500 O HOH A 306 O HOH A 406 3554 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue X30 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 DBREF 5W55 A 42 168 UNP O60885 BRD4_HUMAN 42 168 SEQRES 1 A 127 SER THR ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN SEQRES 2 A 127 LYS PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU SEQRES 3 A 127 ARG VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA SEQRES 4 A 127 TRP PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN SEQRES 5 A 127 LEU PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP SEQRES 6 A 127 MET GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR SEQRES 7 A 127 TRP ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET SEQRES 8 A 127 PHE THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP SEQRES 9 A 127 ILE VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU SEQRES 10 A 127 GLN LYS ILE ASN GLU LEU PRO THR GLU GLU HET X30 A 201 83 HET EDO A 202 10 HETNAM X30 11-ETHYL-2-({2-METHOXY-4-[4-(4-METHYLPIPERAZIN-1-YL) HETNAM 2 X30 PIPERIDINE-1-CARBONYL]PHENYL}AMINO)-5-METHYL-5,11- HETNAM 3 X30 DIHYDRO-6H-PYRIMIDO[4,5-B][1,4]BENZODIAZEPIN-6-ONE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 X30 C32 H40 N8 O3 FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *148(H2 O) HELIX 1 AA1 THR A 60 VAL A 69 1 10 HELIX 2 AA2 VAL A 69 LYS A 76 1 8 HELIX 3 AA3 ALA A 80 GLN A 84 5 5 HELIX 4 AA4 ASP A 96 ILE A 101 1 6 HELIX 5 AA5 ASP A 106 ASN A 116 1 11 HELIX 6 AA6 ASN A 121 ASN A 140 1 20 HELIX 7 AA7 ASP A 144 GLU A 163 1 20 SITE 1 AC1 14 TRP A 81 PRO A 82 LEU A 92 LEU A 94 SITE 2 AC1 14 GLU A 115 ASN A 116 TYR A 139 ASN A 140 SITE 3 AC1 14 HOH A 309 HOH A 316 HOH A 342 HOH A 354 SITE 4 AC1 14 HOH A 362 HOH A 398 SITE 1 AC2 7 ILE A 100 ILE A 101 LYS A 102 THR A 103 SITE 2 AC2 7 ASN A 135 HOH A 318 HOH A 356 CRYST1 43.411 51.351 56.755 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023036 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017620 0.00000