HEADER DNA BINDING PROTEIN/DNA 16-JUN-17 5W6K
TITLE STRUCTURE OF MUTANT TAQ POLYMERASE INCORPORATING UNNATURAL BASE PAIRS
TITLE 2 Z:P
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DNA POLYMERASE I, THERMOSTABLE;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UNP RESIDUES 293-831;
COMPND 5 SYNONYM: TAQ POLYMERASE 1;
COMPND 6 EC: 2.7.7.7;
COMPND 7 ENGINEERED: YES;
COMPND 8 MOL_ID: 2;
COMPND 9 MOLECULE: DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*GP*CP*(DOC))-3');
COMPND 10 CHAIN: B;
COMPND 11 ENGINEERED: YES;
COMPND 12 MOL_ID: 3;
COMPND 13 MOLECULE: DNA (5'-D(P*(1WA)P*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3');
COMPND 14 CHAIN: C;
COMPND 15 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS AQUATICUS;
SOURCE 3 ORGANISM_TAXID: 271;
SOURCE 4 GENE: POLA, POL1;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 MOL_ID: 2;
SOURCE 8 SYNTHETIC: YES;
SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;
SOURCE 10 ORGANISM_TAXID: 562;
SOURCE 11 MOL_ID: 3;
SOURCE 12 SYNTHETIC: YES;
SOURCE 13 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;
SOURCE 14 ORGANISM_TAXID: 562
KEYWDS MUTANT TAQ POLYMERASE, UNNATURAL BASE PAIRS, AEGIS, TERNARY COMPLEX,
KEYWDS 2 KLENTAQ, BINARY COMPLEX, TRANSFERASE-DNA COMPLEX, DNA BINDING
KEYWDS 3 PROTEIN-DNA COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR I.SINGH,M.M.GEORGIADIS
REVDAT 3 04-OCT-23 5W6K 1 LINK
REVDAT 2 19-SEP-18 5W6K 1 JRNL
REVDAT 1 18-JUL-18 5W6K 0
JRNL AUTH I.SINGH,R.LAOS,S.HOSHIKA,S.A.BENNER,M.M.GEORGIADIS
JRNL TITL SNAPSHOTS OF AN EVOLVED DNA POLYMERASE PRE- AND
JRNL TITL 2 POST-INCORPORATION OF AN UNNATURAL NUCLEOTIDE.
JRNL REF NUCLEIC ACIDS RES. V. 46 7977 2018
JRNL REFN ESSN 1362-4962
JRNL PMID 29986111
JRNL DOI 10.1093/NAR/GKY552
REMARK 2
REMARK 2 RESOLUTION. 2.34 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.11.1_2575
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.98
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360
REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2
REMARK 3 NUMBER OF REFLECTIONS : 25878
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.227
REMARK 3 R VALUE (WORKING SET) : 0.224
REMARK 3 FREE R VALUE : 0.275
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750
REMARK 3 FREE R VALUE TEST SET COUNT : 1229
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 41.9847 - 4.8623 0.99 3000 106 0.1974 0.2390
REMARK 3 2 4.8623 - 3.8602 1.00 2866 131 0.1788 0.1966
REMARK 3 3 3.8602 - 3.3725 1.00 2824 149 0.2077 0.2519
REMARK 3 4 3.3725 - 3.0642 1.00 2846 136 0.2395 0.3194
REMARK 3 5 3.0642 - 2.8446 1.00 2762 188 0.2508 0.3075
REMARK 3 6 2.8446 - 2.6770 1.00 2785 155 0.2705 0.3216
REMARK 3 7 2.6770 - 2.5429 0.98 2778 132 0.2784 0.3479
REMARK 3 8 2.5429 - 2.4322 0.96 2726 116 0.2745 0.3343
REMARK 3 9 2.4322 - 2.3386 0.74 2062 116 0.2884 0.3478
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.260
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 29.27
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.72
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.003 4819
REMARK 3 ANGLE : 0.590 6635
REMARK 3 CHIRALITY : 0.039 734
REMARK 3 PLANARITY : 0.003 774
REMARK 3 DIHEDRAL : 14.448 2818
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 8
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 296 THROUGH 448 )
REMARK 3 ORIGIN FOR THE GROUP (A): 39.3858 -41.4522 -18.0278
REMARK 3 T TENSOR
REMARK 3 T11: 0.2916 T22: 0.2177
REMARK 3 T33: 0.5514 T12: -0.0624
REMARK 3 T13: 0.1434 T23: -0.0065
REMARK 3 L TENSOR
REMARK 3 L11: 1.2741 L22: 0.8280
REMARK 3 L33: 0.8239 L12: 0.1154
REMARK 3 L13: 0.1061 L23: -0.0246
REMARK 3 S TENSOR
REMARK 3 S11: -0.0904 S12: -0.0337 S13: -0.7241
REMARK 3 S21: -0.2608 S22: 0.0250 S23: -0.3765
REMARK 3 S31: 0.2145 S32: 0.0756 S33: 0.0627
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 449 THROUGH 604 )
REMARK 3 ORIGIN FOR THE GROUP (A): 35.9072 -11.0043 0.8575
REMARK 3 T TENSOR
REMARK 3 T11: 0.6238 T22: 0.2008
REMARK 3 T33: 0.3284 T12: -0.0254
REMARK 3 T13: 0.1067 T23: -0.0224
REMARK 3 L TENSOR
REMARK 3 L11: 0.4789 L22: 0.4973
REMARK 3 L33: 0.3864 L12: 0.4249
REMARK 3 L13: 0.0048 L23: -0.2043
REMARK 3 S TENSOR
REMARK 3 S11: 0.1679 S12: -0.0827 S13: 0.2585
REMARK 3 S21: -0.0566 S22: -0.0597 S23: 0.0939
REMARK 3 S31: -0.8041 S32: -0.0549 S33: -0.0710
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 605 THROUGH 713 )
REMARK 3 ORIGIN FOR THE GROUP (A): 9.8414 -16.9606 -7.5362
REMARK 3 T TENSOR
REMARK 3 T11: 0.5030 T22: 0.9817
REMARK 3 T33: 0.2947 T12: 0.4331
REMARK 3 T13: -0.0429 T23: 0.0937
REMARK 3 L TENSOR
REMARK 3 L11: 0.3148 L22: 0.1219
REMARK 3 L33: 1.2375 L12: -0.0049
REMARK 3 L13: -0.2558 L23: -0.3438
REMARK 3 S TENSOR
REMARK 3 S11: -0.1654 S12: -0.4167 S13: 0.1839
REMARK 3 S21: 0.1014 S22: 0.3053 S23: 0.2226
REMARK 3 S31: -0.6106 S32: -0.8399 S33: 0.3803
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 714 THROUGH 831 )
REMARK 3 ORIGIN FOR THE GROUP (A): 20.9163 -25.6287 -16.6075
REMARK 3 T TENSOR
REMARK 3 T11: 0.2827 T22: 0.4150
REMARK 3 T33: 0.2078 T12: 0.0245
REMARK 3 T13: 0.0002 T23: 0.0875
REMARK 3 L TENSOR
REMARK 3 L11: 0.8946 L22: 0.7909
REMARK 3 L33: 1.4972 L12: 0.2926
REMARK 3 L13: -0.3958 L23: 0.2142
REMARK 3 S TENSOR
REMARK 3 S11: -0.0963 S12: 0.0795 S13: -0.0530
REMARK 3 S21: -0.2659 S22: 0.2109 S23: 0.0684
REMARK 3 S31: -0.3383 S32: -0.7270 S33: -0.1193
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 104 )
REMARK 3 ORIGIN FOR THE GROUP (A): 48.5504 -29.9145 5.2064
REMARK 3 T TENSOR
REMARK 3 T11: 0.2782 T22: 0.7179
REMARK 3 T33: 0.7612 T12: 0.1222
REMARK 3 T13: -0.1295 T23: 0.1533
REMARK 3 L TENSOR
REMARK 3 L11: 5.2442 L22: 0.6000
REMARK 3 L33: 0.7979 L12: -1.5702
REMARK 3 L13: -0.1298 L23: 0.3602
REMARK 3 S TENSOR
REMARK 3 S11: 0.0369 S12: 0.4578 S13: -0.1785
REMARK 3 S21: -0.0537 S22: -0.1049 S23: -0.0178
REMARK 3 S31: -0.0906 S32: -0.1026 S33: -0.0326
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'C' AND (RESID 204 THROUGH 212 )
REMARK 3 ORIGIN FOR THE GROUP (A): 31.0410 -22.2727 0.8740
REMARK 3 T TENSOR
REMARK 3 T11: 0.2084 T22: 0.2948
REMARK 3 T33: 0.1907 T12: 0.0877
REMARK 3 T13: 0.0334 T23: 0.0600
REMARK 3 L TENSOR
REMARK 3 L11: 2.2877 L22: 1.4549
REMARK 3 L33: 0.9206 L12: 1.0383
REMARK 3 L13: 0.9157 L23: 0.6263
REMARK 3 S TENSOR
REMARK 3 S11: -0.0249 S12: -0.2879 S13: 0.0101
REMARK 3 S21: 0.0947 S22: 0.0792 S23: 0.0473
REMARK 3 S31: -0.2210 S32: -0.2878 S33: -0.0897
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 105 THROUGH 111 )
REMARK 3 ORIGIN FOR THE GROUP (A): 29.0776 -19.3392 1.3978
REMARK 3 T TENSOR
REMARK 3 T11: 0.3432 T22: 0.2838
REMARK 3 T33: 0.2144 T12: 0.1373
REMARK 3 T13: 0.0379 T23: 0.0601
REMARK 3 L TENSOR
REMARK 3 L11: 1.3106 L22: 0.3370
REMARK 3 L33: 2.5611 L12: 0.0737
REMARK 3 L13: 1.5312 L23: -0.4190
REMARK 3 S TENSOR
REMARK 3 S11: 0.0996 S12: 0.2420 S13: 0.0854
REMARK 3 S21: -0.1101 S22: -0.1032 S23: -0.0623
REMARK 3 S31: -0.3175 S32: -0.2186 S33: 0.0269
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN 'C' AND (RESID 213 THROUGH 216 )
REMARK 3 ORIGIN FOR THE GROUP (A): 46.6825 -27.5259 14.4848
REMARK 3 T TENSOR
REMARK 3 T11: 0.2698 T22: 0.4210
REMARK 3 T33: 0.4251 T12: 0.1844
REMARK 3 T13: -0.1637 T23: 0.0321
REMARK 3 L TENSOR
REMARK 3 L11: 2.4730 L22: 2.5089
REMARK 3 L33: 0.3677 L12: -2.4027
REMARK 3 L13: 0.6702 L23: -0.8318
REMARK 3 S TENSOR
REMARK 3 S11: -0.1991 S12: -0.2616 S13: 0.0588
REMARK 3 S21: 0.3562 S22: 0.2262 S23: 0.0248
REMARK 3 S31: -0.1215 S32: -0.1166 S33: 0.0204
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5W6K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-17.
REMARK 100 THE DEPOSITION ID IS D_1000227072.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 02-MAR-16
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 19-ID
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.98
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26672
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.339
REMARK 200 RESOLUTION RANGE LOW (A) : 41.978
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3
REMARK 200 DATA REDUNDANCY : 6.100
REMARK 200 R MERGE (I) : 0.11200
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.2000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39
REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5
REMARK 200 DATA REDUNDANCY IN SHELL : 3.50
REMARK 200 R MERGE FOR SHELL (I) : 0.39900
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: 3RTV
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 47.94
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 19 % PEG 4000, 0.2 M AMMONIUM ACETATE,
REMARK 280 0.01 M MAGNESIUM ACETATE, 0.05 M SODIUM CACODYLATE PH 6.5, VAPOR
REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277.16K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+2/3
REMARK 290 6555 -X,-X+Y,-Z+1/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.29033
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.58067
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.58067
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.29033
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 5360 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 24860 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A1133 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A1137 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ALA A 293
REMARK 465 LEU A 294
REMARK 465 GLU A 295
REMARK 465 TYR A 686
REMARK 465 GLU A 687
REMARK 465 GLU A 688
REMARK 465 ALA A 689
REMARK 465 GLN A 690
REMARK 465 ALA A 691
REMARK 465 PHE A 692
REMARK 465 ILE A 693
REMARK 465 GLU A 694
REMARK 465 ARG A 695
REMARK 465 TYR A 696
REMARK 465 PHE A 697
REMARK 465 GLN A 698
REMARK 465 SER A 699
REMARK 465 VAL A 832
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 462 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OD1 ASP A 320 HH TYR A 339 1.58
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 DG B 108 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES
REMARK 500 DOC B 112 O3' - P - OP1 ANGL. DEV. = -28.9 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 328 103.85 -168.99
REMARK 500 VAL A 433 -71.17 -123.68
REMARK 500 TYR A 545 -58.57 -121.59
REMARK 500 VAL A 586 -22.52 -154.05
REMARK 500 ALA A 653 32.81 -85.96
REMARK 500 ALA A 683 65.45 63.83
REMARK 500 HIS A 784 -69.01 71.08
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A1142 DISTANCE = 5.94 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 902 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 610 OD1
REMARK 620 2 TYR A 611 O 75.1
REMARK 620 3 ASP A 785 OD2 78.9 89.5
REMARK 620 4 A5J A 901 O1A 94.3 164.9 77.8
REMARK 620 5 A5J A 901 O2B 171.3 106.2 92.4 82.6
REMARK 620 6 A5J A 901 O2G 89.0 98.9 163.2 91.6 99.2
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 903 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 610 OD2
REMARK 620 2 ASP A 785 OD1 108.9
REMARK 620 3 A5J A 901 O1A 112.5 92.5
REMARK 620 4 HOH A1028 O 91.6 157.6 87.6
REMARK 620 5 HOH A1056 O 90.2 86.2 156.2 84.8
REMARK 620 N 1 2 3 4
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue A5J A 901
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 902
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 903
DBREF 5W6K A 293 832 UNP P19821 DPO1_THEAQ 293 832
DBREF 5W6K B 101 112 PDB 5W6K 5W6K 101 112
DBREF 5W6K C 204 216 PDB 5W6K 5W6K 204 216
SEQADV 5W6K VAL A 444 UNP P19821 MET 444 ENGINEERED MUTATION
SEQADV 5W6K ALA A 527 UNP P19821 PRO 527 ENGINEERED MUTATION
SEQADV 5W6K GLU A 551 UNP P19821 ASP 551 ENGINEERED MUTATION
SEQADV 5W6K VAL A 832 UNP P19821 GLU 832 ENGINEERED MUTATION
SEQRES 1 A 540 ALA LEU GLU GLU ALA PRO TRP PRO PRO PRO GLU GLY ALA
SEQRES 2 A 540 PHE VAL GLY PHE VAL LEU SER ARG LYS GLU PRO MET TRP
SEQRES 3 A 540 ALA ASP LEU LEU ALA LEU ALA ALA ALA ARG GLY GLY ARG
SEQRES 4 A 540 VAL HIS ARG ALA PRO GLU PRO TYR LYS ALA LEU ARG ASP
SEQRES 5 A 540 LEU LYS GLU ALA ARG GLY LEU LEU ALA LYS ASP LEU SER
SEQRES 6 A 540 VAL LEU ALA LEU ARG GLU GLY LEU GLY LEU PRO PRO GLY
SEQRES 7 A 540 ASP ASP PRO MET LEU LEU ALA TYR LEU LEU ASP PRO SER
SEQRES 8 A 540 ASN THR THR PRO GLU GLY VAL ALA ARG ARG TYR GLY GLY
SEQRES 9 A 540 GLU TRP THR GLU GLU ALA GLY GLU ARG ALA ALA LEU SER
SEQRES 10 A 540 GLU ARG LEU PHE ALA ASN LEU TRP GLY ARG LEU GLU GLY
SEQRES 11 A 540 GLU GLU ARG LEU LEU TRP LEU TYR ARG GLU VAL GLU ARG
SEQRES 12 A 540 PRO LEU SER ALA VAL LEU ALA HIS VAL GLU ALA THR GLY
SEQRES 13 A 540 VAL ARG LEU ASP VAL ALA TYR LEU ARG ALA LEU SER LEU
SEQRES 14 A 540 GLU VAL ALA GLU GLU ILE ALA ARG LEU GLU ALA GLU VAL
SEQRES 15 A 540 PHE ARG LEU ALA GLY HIS PRO PHE ASN LEU ASN SER ARG
SEQRES 16 A 540 ASP GLN LEU GLU ARG VAL LEU PHE ASP GLU LEU GLY LEU
SEQRES 17 A 540 PRO ALA ILE GLY LYS THR GLU LYS THR GLY LYS ARG SER
SEQRES 18 A 540 THR SER ALA ALA VAL LEU GLU ALA LEU ARG GLU ALA HIS
SEQRES 19 A 540 ALA ILE VAL GLU LYS ILE LEU GLN TYR ARG GLU LEU THR
SEQRES 20 A 540 LYS LEU LYS SER THR TYR ILE ASP PRO LEU PRO GLU LEU
SEQRES 21 A 540 ILE HIS PRO ARG THR GLY ARG LEU HIS THR ARG PHE ASN
SEQRES 22 A 540 GLN THR ALA THR ALA THR GLY ARG LEU SER SER SER ASP
SEQRES 23 A 540 PRO ASN LEU GLN ASN ILE PRO VAL ARG THR PRO LEU GLY
SEQRES 24 A 540 GLN ARG ILE ARG ARG ALA PHE ILE ALA GLU GLU GLY TRP
SEQRES 25 A 540 LEU LEU VAL ALA LEU ASP TYR SER GLN ILE GLU LEU ARG
SEQRES 26 A 540 VAL LEU ALA HIS LEU SER GLY ASP GLU ASN LEU ILE ARG
SEQRES 27 A 540 VAL PHE GLN GLU GLY ARG ASP ILE HIS THR GLU THR ALA
SEQRES 28 A 540 SER TRP MET PHE GLY VAL PRO ARG GLU ALA VAL ASP PRO
SEQRES 29 A 540 LEU MET ARG ARG ALA ALA LYS THR ILE ASN PHE GLY VAL
SEQRES 30 A 540 LEU TYR GLY MET SER ALA HIS ARG LEU SER GLN GLU LEU
SEQRES 31 A 540 ALA ILE PRO TYR GLU GLU ALA GLN ALA PHE ILE GLU ARG
SEQRES 32 A 540 TYR PHE GLN SER PHE PRO LYS VAL ARG ALA TRP ILE GLU
SEQRES 33 A 540 LYS THR LEU GLU GLU GLY ARG ARG ARG GLY TYR VAL GLU
SEQRES 34 A 540 THR LEU PHE GLY ARG ARG ARG TYR VAL PRO ASP LEU GLU
SEQRES 35 A 540 ALA ARG VAL LYS SER VAL ARG GLU ALA ALA GLU ARG MET
SEQRES 36 A 540 ALA PHE ASN MET PRO VAL GLN GLY THR ALA ALA ASP LEU
SEQRES 37 A 540 MET LYS LEU ALA MET VAL LYS LEU PHE PRO ARG LEU GLU
SEQRES 38 A 540 GLU MET GLY ALA ARG MET LEU LEU GLN VAL HIS ASP GLU
SEQRES 39 A 540 LEU VAL LEU GLU ALA PRO LYS GLU ARG ALA GLU ALA VAL
SEQRES 40 A 540 ALA ARG LEU ALA LYS GLU VAL MET GLU GLY VAL TYR PRO
SEQRES 41 A 540 LEU ALA VAL PRO LEU GLU VAL GLU VAL GLY ILE GLY GLU
SEQRES 42 A 540 ASP TRP LEU SER ALA LYS VAL
SEQRES 1 B 12 DG DA DC DC DA DC DG DG DC DG DC DOC
SEQRES 1 C 13 1WA DG DG DC DG DC DC DG DT DG DG DT DC
HET DOC B 112 30
HET 1WA C 204 34
HET A5J A 901 45
HET MG A 902 1
HET MG A 903 1
HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
HETNAM 1WA 2-AMINO-8-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-
HETNAM 2 1WA PENTOFURANOSYL)-4-HYDROXY-1H-IMIDAZO[1,2-A][1,3,
HETNAM 3 1WA 5]TRIAZINE-5,8-DIIUM
HETNAM A5J (1R)-1-[6-AMINO-5-(DIHYDROXYAMINO)-2-HYDROXYPYRIDIN-3-
HETNAM 2 A5J YL]-1,4-ANHYDRO-2-DEOXY-5-O-[(S)-HYDROXY{[(S)-
HETNAM 3 A5J HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]-D-
HETNAM 4 A5J ERYTHRO-PENTITOL
HETNAM MG MAGNESIUM ION
FORMUL 2 DOC C9 H14 N3 O6 P
FORMUL 3 1WA C10 H16 N5 O7 P 2+
FORMUL 4 A5J C10 H18 N3 O15 P3
FORMUL 5 MG 2(MG 2+)
FORMUL 7 HOH *167(H2 O)
HELIX 1 AA1 GLU A 337 LEU A 342 1 6
HELIX 2 AA2 ARG A 343 LEU A 345 5 3
HELIX 3 AA3 LEU A 352 GLU A 363 1 12
HELIX 4 AA4 ASP A 372 ASP A 381 1 10
HELIX 5 AA5 THR A 386 GLY A 395 1 10
HELIX 6 AA6 GLU A 401 LEU A 420 1 20
HELIX 7 AA7 GLU A 423 VAL A 433 1 11
HELIX 8 AA8 VAL A 433 GLY A 448 1 16
HELIX 9 AA9 ASP A 452 GLY A 479 1 28
HELIX 10 AB1 SER A 486 ASP A 496 1 11
HELIX 11 AB2 SER A 515 ALA A 521 1 7
HELIX 12 AB3 HIS A 526 TYR A 545 1 20
HELIX 13 AB4 PRO A 548 ILE A 553 5 6
HELIX 14 AB5 THR A 588 ARG A 596 1 9
HELIX 15 AB6 GLN A 613 GLY A 624 1 12
HELIX 16 AB7 ASP A 625 GLU A 634 1 10
HELIX 17 AB8 ASP A 637 PHE A 647 1 11
HELIX 18 AB9 ASP A 655 TYR A 671 1 17
HELIX 19 AC1 SER A 674 GLN A 680 1 7
HELIX 20 AC2 LYS A 702 GLY A 718 1 17
HELIX 21 AC3 PRO A 731 ALA A 735 5 5
HELIX 22 AC4 VAL A 737 MET A 775 1 39
HELIX 23 AC5 ARG A 795 GLY A 809 1 15
SHEET 1 AA1 3 PHE A 306 LEU A 311 0
SHEET 2 AA1 3 LEU A 321 ALA A 327 -1 O ALA A 327 N PHE A 306
SHEET 3 AA1 3 VAL A 332 ARG A 334 -1 O HIS A 333 N ALA A 326
SHEET 1 AA2 2 ARG A 450 LEU A 451 0
SHEET 2 AA2 2 PHE A 598 ILE A 599 -1 O ILE A 599 N ARG A 450
SHEET 1 AA3 2 ARG A 563 ASN A 565 0
SHEET 2 AA3 2 SER A 575 SER A 577 -1 O SER A 575 N ASN A 565
SHEET 1 AA4 4 ARG A 778 GLN A 782 0
SHEET 2 AA4 4 GLU A 786 PRO A 792 -1 O GLU A 790 N ARG A 778
SHEET 3 AA4 4 TRP A 604 TYR A 611 -1 N VAL A 607 O LEU A 789
SHEET 4 AA4 4 VAL A 819 GLY A 824 -1 O GLU A 820 N ASP A 610
SHEET 1 AA5 2 TYR A 719 GLU A 721 0
SHEET 2 AA5 2 ARG A 727 TYR A 729 -1 O ARG A 728 N VAL A 720
LINK O3' DC B 111 P DOC B 112 1555 1555 1.59
LINK O3' 1WA C 204 P DG C 205 1555 1555 1.59
LINK OD1 ASP A 610 MG MG A 902 1555 1555 2.23
LINK OD2 ASP A 610 MG MG A 903 1555 1555 2.15
LINK O TYR A 611 MG MG A 902 1555 1555 1.89
LINK OD2 ASP A 785 MG MG A 902 1555 1555 2.23
LINK OD1 ASP A 785 MG MG A 903 1555 1555 2.01
LINK O1A A5J A 901 MG MG A 902 1555 1555 2.21
LINK O2B A5J A 901 MG MG A 902 1555 1555 2.04
LINK O2G A5J A 901 MG MG A 902 1555 1555 2.11
LINK O1A A5J A 901 MG MG A 903 1555 1555 2.26
LINK MG MG A 903 O HOH A1028 1555 1555 2.64
LINK MG MG A 903 O HOH A1056 1555 1555 2.35
CISPEP 1 TRP A 299 PRO A 300 0 2.23
CISPEP 2 ASP A 578 PRO A 579 0 -4.96
SITE 1 AC1 22 ARG A 573 ASP A 610 TYR A 611 SER A 612
SITE 2 AC1 22 GLN A 613 ILE A 614 GLU A 615 HIS A 639
SITE 3 AC1 22 ARG A 659 ARG A 660 LYS A 663 PHE A 667
SITE 4 AC1 22 ASP A 785 MG A 902 MG A 903 HOH A1023
SITE 5 AC1 22 HOH A1028 HOH A1040 HOH A1055 DOC B 112
SITE 6 AC1 22 1WA C 204 DG C 205
SITE 1 AC2 5 ASP A 610 TYR A 611 ASP A 785 A5J A 901
SITE 2 AC2 5 MG A 903
SITE 1 AC3 6 ASP A 610 ASP A 785 A5J A 901 MG A 902
SITE 2 AC3 6 HOH A1028 HOH A1056
CRYST1 109.306 109.306 90.871 90.00 90.00 120.00 P 31 2 1 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009149 0.005282 0.000000 0.00000
SCALE2 0.000000 0.010564 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011005 0.00000