HEADER VIRAL PROTEIN/PEPTIDE 16-JUN-17 5W6T TITLE CRYSTAL STRUCTURE OF THE A/PUERTO RICO/8/1934 (H1N1) INFLUENZA VIRUS TITLE 2 HEMAGGLUTININ IN COMPLEX WITH CYCLIC PEPTIDE CP151070 (P7) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 18-343; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEMAGGLUTININ; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: RESIDUES 344-519; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: ACE-PH8-ORN-MLE-GLU-TYR-ZCL-GLU-TRP-LEU-SER-9WV; COMPND 13 CHAIN: F; COMPND 14 SYNONYM: CYCLIC PEPTIDE CP151070 (P7); COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/1934 SOURCE 3 H1N1); SOURCE 4 ORGANISM_TAXID: 211044; SOURCE 5 STRAIN: A/PUERTO RICO/8/1934 H1N1; SOURCE 6 GENE: HA; SOURCE 7 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/1934 SOURCE 11 H1N1); SOURCE 12 ORGANISM_TAXID: 211044; SOURCE 13 STRAIN: A/PUERTO RICO/8/1934 H1N1; SOURCE 14 GENE: HA; SOURCE 15 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 20 ORGANISM_TAXID: 32630 KEYWDS GLYCOPROTEIN, ECTODOMAIN, N-GLYCOSYLATION, VIRAL PROTEIN, VIRAL KEYWDS 2 PROTEIN-PEPTIDE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.A.WILSON,R.U.KADAM REVDAT 8 25-DEC-24 5W6T 1 REMARK LINK ATOM REVDAT 7 15-NOV-23 5W6T 1 LINK ATOM REVDAT 6 04-OCT-23 5W6T 1 HETSYN REVDAT 5 29-JUL-20 5W6T 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 11-DEC-19 5W6T 1 REMARK REVDAT 3 08-NOV-17 5W6T 1 JRNL REVDAT 2 25-OCT-17 5W6T 1 JRNL REVDAT 1 04-OCT-17 5W6T 0 JRNL AUTH R.U.KADAM,J.JURASZEK,B.BRANDENBURG,C.BUYCK,W.B.G.SCHEPENS, JRNL AUTH 2 B.KESTELEYN,B.STOOPS,R.J.VREEKEN,J.VERMOND,W.GOUTIER,C.TANG, JRNL AUTH 3 R.VOGELS,R.H.E.FRIESEN,J.GOUDSMIT,M.J.P.VAN DONGEN, JRNL AUTH 4 I.A.WILSON JRNL TITL POTENT PEPTIDIC FUSION INHIBITORS OF INFLUENZA VIRUS. JRNL REF SCIENCE V. 358 496 2017 JRNL REFN ESSN 1095-9203 JRNL PMID 28971971 JRNL DOI 10.1126/SCIENCE.AAN0516 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 21284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0879 - 5.1781 0.89 2497 158 0.1993 0.2153 REMARK 3 2 5.1781 - 4.1112 0.91 2504 131 0.1766 0.2220 REMARK 3 3 4.1112 - 3.5919 0.93 2555 136 0.1984 0.2291 REMARK 3 4 3.5919 - 3.2636 0.92 2520 138 0.2408 0.2951 REMARK 3 5 3.2636 - 3.0298 0.94 2564 115 0.2694 0.3606 REMARK 3 6 3.0298 - 2.8512 0.93 2544 134 0.2728 0.3205 REMARK 3 7 2.8512 - 2.7084 0.93 2519 124 0.2795 0.3144 REMARK 3 8 2.7084 - 2.5905 0.92 2509 136 0.2935 0.3412 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4219 REMARK 3 ANGLE : 0.966 5722 REMARK 3 CHIRALITY : 0.056 610 REMARK 3 PLANARITY : 0.005 742 REMARK 3 DIHEDRAL : 14.977 2589 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5W6T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228515. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0331 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 712 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 712 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21313 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12000 REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.80000 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1RU7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HA: 10 MG/ML 1M LITHIUM CHLORIDE 20 % REMARK 280 W/V PEG 6000 0.1M MES, PH=5.3, PH 5.3, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 82.16550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.16550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 82.16550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.16550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 82.16550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 82.16550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 82.16550 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 82.16550 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 82.16550 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 82.16550 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 82.16550 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 82.16550 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 82.16550 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 82.16550 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 82.16550 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 82.16550 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 82.16550 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 82.16550 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 82.16550 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 82.16550 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 82.16550 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 82.16550 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 82.16550 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 82.16550 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 82.16550 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 82.16550 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 82.16550 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 82.16550 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 82.16550 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 82.16550 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 82.16550 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 82.16550 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 82.16550 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 82.16550 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 82.16550 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 82.16550 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: NONAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: NONAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 36550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -169.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL B 201 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 527 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 326 REMARK 465 GLN A 327 REMARK 465 SER A 328 REMARK 465 ARG A 329 REMARK 465 LYS B 172 REMARK 465 VAL B 173 REMARK 465 ASP B 174 REMARK 465 GLY B 175 REMARK 465 VAL B 176 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 224 O2 GOL A 404 1.29 REMARK 500 ND2 ASN A 73 O1 GOL A 404 2.07 REMARK 500 O CYS A 76 NH2 ARG A 149 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR F 6 CB TYR F 6 CG -0.113 REMARK 500 TRP F 9 CG TRP F 9 CD2 -0.104 REMARK 500 TRP F 9 CE2 TRP F 9 CD2 -0.078 REMARK 500 LEU F 10 CA LEU F 10 C -0.158 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 9WV F 12 C - N - CA ANGL. DEV. = -18.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 20 -161.13 -168.94 REMARK 500 ASN A 33 44.38 71.05 REMARK 500 LYS A 125A -72.51 -50.07 REMARK 500 SER A 125C -19.85 173.98 REMARK 500 CYS A 139 66.11 -110.84 REMARK 500 GLN A 196 -0.92 64.52 REMARK 500 ASN A 199 47.47 -106.41 REMARK 500 THR A 206 -168.10 -129.53 REMARK 500 ASN A 210 105.93 -161.78 REMARK 500 PRO A 306 170.28 -58.17 REMARK 500 ALA B 5 -79.53 -92.29 REMARK 500 LYS B 127 -126.14 59.03 REMARK 500 ASN B 135 19.71 55.76 REMARK 500 SER F 11 -109.48 -82.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER F 11 9WV F 12 -147.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5W6R RELATED DB: PDB REMARK 900 RELATED ID: 5W6I RELATED DB: PDB REMARK 900 RELATED ID: 5W6U RELATED DB: PDB REMARK 900 RELATED ID: 5W5U RELATED DB: PDB REMARK 900 RELATED ID: 5W5S RELATED DB: PDB DBREF 5W6T A 11 329 UNP P03452 HEMA_I34A1 18 343 DBREF 5W6T B 1 176 UNP P03452 HEMA_I34A1 344 519 DBREF 5W6T F 1 12 PDB 5W6T 5W6T 1 12 SEQRES 1 A 326 ASP THR ILE CYS ILE GLY TYR HIS ALA ASN ASN SER THR SEQRES 2 A 326 ASP THR VAL ASP THR VAL LEU GLU LYS ASN VAL THR VAL SEQRES 3 A 326 THR HIS SER VAL ASN LEU LEU GLU ASP SER HIS ASN GLY SEQRES 4 A 326 LYS LEU CYS ARG LEU LYS GLY ILE ALA PRO LEU GLN LEU SEQRES 5 A 326 GLY LYS CYS ASN ILE ALA GLY TRP LEU LEU GLY ASN PRO SEQRES 6 A 326 GLU CYS ASP PRO LEU LEU PRO VAL ARG SER TRP SER TYR SEQRES 7 A 326 ILE VAL GLU THR PRO ASN SER GLU ASN GLY ILE CYS TYR SEQRES 8 A 326 PRO GLY ASP PHE ILE ASP TYR GLU GLU LEU ARG GLU GLN SEQRES 9 A 326 LEU SER SER VAL SER SER PHE GLU ARG PHE GLU ILE PHE SEQRES 10 A 326 PRO LYS GLU SER SER TRP PRO ASN HIS ASN THR ASN GLY SEQRES 11 A 326 VAL THR ALA ALA CYS SER HIS GLU GLY LYS SER SER PHE SEQRES 12 A 326 TYR ARG ASN LEU LEU TRP LEU THR GLU LYS GLU GLY SER SEQRES 13 A 326 TYR PRO LYS LEU LYS ASN SER TYR VAL ASN LYS LYS GLY SEQRES 14 A 326 LYS GLU VAL LEU VAL LEU TRP GLY ILE HIS HIS PRO PRO SEQRES 15 A 326 ASN SER LYS GLU GLN GLN ASN LEU TYR GLN ASN GLU ASN SEQRES 16 A 326 ALA TYR VAL SER VAL VAL THR SER ASN TYR ASN ARG ARG SEQRES 17 A 326 PHE THR PRO GLU ILE ALA GLU ARG PRO LYS VAL ARG ASP SEQRES 18 A 326 GLN ALA GLY ARG MET ASN TYR TYR TRP THR LEU LEU LYS SEQRES 19 A 326 PRO GLY ASP THR ILE ILE PHE GLU ALA ASN GLY ASN LEU SEQRES 20 A 326 ILE ALA PRO MET TYR ALA PHE ALA LEU SER ARG GLY PHE SEQRES 21 A 326 GLY SER GLY ILE ILE THR SER ASN ALA SER MET HIS GLU SEQRES 22 A 326 CYS ASN THR LYS CYS GLN THR PRO LEU GLY ALA ILE ASN SEQRES 23 A 326 SER SER LEU PRO TYR GLN ASN ILE HIS PRO VAL THR ILE SEQRES 24 A 326 GLY GLU CYS PRO LYS TYR VAL ARG SER ALA LYS LEU ARG SEQRES 25 A 326 MET VAL THR GLY LEU ARG ASN ILE PRO SER ILE GLN SER SEQRES 26 A 326 ARG SEQRES 1 B 176 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU GLY GLY SEQRES 2 B 176 TRP THR GLY MET ILE ASP GLY TRP TYR GLY TYR HIS HIS SEQRES 3 B 176 GLN ASN GLU GLN GLY SER GLY TYR ALA ALA ASP GLN LYS SEQRES 4 B 176 SER THR GLN ASN ALA ILE ASN GLY ILE THR ASN LYS VAL SEQRES 5 B 176 ASN THR VAL ILE GLU LYS MET ASN ILE GLN PHE THR ALA SEQRES 6 B 176 VAL GLY LYS GLU PHE ASN LYS LEU GLU LYS ARG MET GLU SEQRES 7 B 176 ASN LEU ASN LYS LYS VAL ASP ASP GLY PHE LEU ASP ILE SEQRES 8 B 176 TRP THR TYR ASN ALA GLU LEU LEU VAL LEU LEU GLU ASN SEQRES 9 B 176 GLU ARG THR LEU ASP PHE HIS ASP SER ASN VAL LYS ASN SEQRES 10 B 176 LEU TYR GLU LYS VAL LYS SER GLN LEU LYS ASN ASN ALA SEQRES 11 B 176 LYS GLU ILE GLY ASN GLY CYS PHE GLU PHE TYR HIS LYS SEQRES 12 B 176 CYS ASP ASN GLU CYS MET GLU SER VAL ARG ASN GLY THR SEQRES 13 B 176 TYR ASP TYR PRO LYS TYR SER GLU GLU SER LYS LEU ASN SEQRES 14 B 176 ARG GLU LYS VAL ASP GLY VAL SEQRES 1 F 12 ACE PH8 ORN MLE GLU TYR ZCL GLU TRP LEU SER 9WV HET ACE F 1 3 HET PH8 F 2 13 HET ORN F 3 8 HET MLE F 4 9 HET ZCL F 7 13 HET 9WV F 12 11 HET NAG C 1 14 HET NAG C 2 14 HET NAG A 401 14 HET NAG A 402 14 HET GOL A 403 6 HET GOL A 404 6 HET CL B 201 1 HETNAM ACE ACETYL GROUP HETNAM PH8 5-PHENYL-L-NORVALINE HETNAM ORN L-ORNITHINE HETNAM MLE N-METHYLLEUCINE HETNAM ZCL 3,4-DICHLORO-L-PHENYLALANINE HETNAM 9WV BETA-ALANYL-3-AMINO-L-ALANINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ACE C2 H4 O FORMUL 3 PH8 C11 H15 N O2 FORMUL 3 ORN C5 H12 N2 O2 FORMUL 3 MLE C7 H15 N O2 FORMUL 3 ZCL C9 H9 CL2 N O2 FORMUL 3 9WV C6 H13 N3 O3 FORMUL 4 NAG 4(C8 H15 N O6) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 CL CL 1- FORMUL 10 HOH *68(H2 O) HELIX 1 AA1 ASN A 65 GLY A 72 1 8 HELIX 2 AA2 ASP A 104 SER A 113 1 10 HELIX 3 AA3 ASN A 187 GLN A 196 1 10 HELIX 4 AA4 ASP B 37 LYS B 58 1 22 HELIX 5 AA5 GLU B 74 LYS B 127 1 54 HELIX 6 AA6 ASP B 145 ASN B 154 1 10 HELIX 7 AA7 ASP B 158 GLU B 171 1 14 SHEET 1 AA1 5 SER B 32 ALA B 36 0 SHEET 2 AA1 5 TYR B 22 GLN B 27 -1 N TYR B 24 O ALA B 35 SHEET 3 AA1 5 THR A 12 TYR A 17 -1 N CYS A 14 O HIS B 25 SHEET 4 AA1 5 CYS B 137 PHE B 140 -1 O PHE B 138 N ILE A 13 SHEET 5 AA1 5 ALA B 130 GLU B 132 -1 N LYS B 131 O GLU B 139 SHEET 1 AA2 2 ASP A 24 VAL A 26 0 SHEET 2 AA2 2 VAL A 34 VAL A 36 -1 O VAL A 34 N VAL A 26 SHEET 1 AA3 2 SER A 39 ASN A 41 0 SHEET 2 AA3 2 ARG A 315 VAL A 317 -1 O MET A 316 N VAL A 40 SHEET 1 AA4 3 LEU A 43 GLU A 44 0 SHEET 2 AA4 3 TYR A 294 GLN A 295 1 O TYR A 294 N GLU A 44 SHEET 3 AA4 3 LYS A 307 TYR A 308 1 O LYS A 307 N GLN A 295 SHEET 1 AA5 2 LEU A 51 LEU A 54 0 SHEET 2 AA5 2 MET A 274 THR A 279 1 O CYS A 277 N ARG A 53 SHEET 1 AA6 3 LEU A 59 GLN A 60 0 SHEET 2 AA6 3 ILE A 87 GLU A 89 1 O VAL A 88 N LEU A 59 SHEET 3 AA6 3 ILE A 267 THR A 269 1 O ILE A 268 N ILE A 87 SHEET 1 AA7 6 VAL A 82 SER A 83A 0 SHEET 2 AA7 6 VAL A 115 GLU A 122 -1 O PHE A 118 N ARG A 83 SHEET 3 AA7 6 TYR A 256 ARG A 262 -1 O SER A 261 N SER A 116 SHEET 4 AA7 6 GLU A 175 HIS A 184 -1 N LEU A 177 O PHE A 258 SHEET 5 AA7 6 LEU A 251 PRO A 254 -1 O ILE A 252 N GLY A 181 SHEET 6 AA7 6 LEU A 151 TRP A 153 -1 N LEU A 152 O ALA A 253 SHEET 1 AA8 5 VAL A 82 SER A 83A 0 SHEET 2 AA8 5 VAL A 115 GLU A 122 -1 O PHE A 118 N ARG A 83 SHEET 3 AA8 5 TYR A 256 ARG A 262 -1 O SER A 261 N SER A 116 SHEET 4 AA8 5 GLU A 175 HIS A 184 -1 N LEU A 177 O PHE A 258 SHEET 5 AA8 5 ARG A 229 LEU A 237 -1 O TYR A 233 N TRP A 180 SHEET 1 AA9 2 THR A 136 HIS A 141 0 SHEET 2 AA9 2 LYS A 144 SER A 146 -1 O LYS A 144 N HIS A 141 SHEET 1 AB1 4 LEU A 164 VAL A 169 0 SHEET 2 AB1 4 THR A 242 ALA A 247 -1 O PHE A 245 N ASN A 166 SHEET 3 AB1 4 VAL A 202 VAL A 205 -1 N SER A 203 O GLU A 246 SHEET 4 AB1 4 ASN A 210 PHE A 213 -1 O PHE A 213 N VAL A 202 SHEET 1 AB2 3 GLY A 286 ILE A 288 0 SHEET 2 AB2 3 CYS A 281 THR A 283 -1 N CYS A 281 O ILE A 288 SHEET 3 AB2 3 ILE A 302 GLY A 303 -1 O ILE A 302 N GLN A 282 SSBOND 1 CYS A 14 CYS B 137 1555 1555 2.03 SSBOND 2 CYS A 52 CYS A 277 1555 1555 2.07 SSBOND 3 CYS A 64 CYS A 76 1555 1555 2.01 SSBOND 4 CYS A 97 CYS A 139 1555 1555 2.05 SSBOND 5 CYS A 281 CYS A 305 1555 1555 2.01 SSBOND 6 CYS B 144 CYS B 148 1555 1555 2.03 LINK ND2 ASN A 21 C1 NAG A 401 1555 1555 1.43 LINK ND2 ASN A 33 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 271 C1 NAG A 402 1555 1555 1.44 LINK C ACE F 1 N PH8 F 2 1555 1555 1.33 LINK C PH8 F 2 N ORN F 3 1555 1555 1.34 LINK C ORN F 3 N MLE F 4 1555 1555 1.33 LINK NE ORN F 3 C 9WV F 12 1555 1555 1.40 LINK C MLE F 4 N GLU F 5 1555 1555 1.39 LINK C TYR F 6 N ZCL F 7 1555 1555 1.41 LINK C ZCL F 7 N GLU F 8 1555 1555 1.41 LINK C SER F 11 N 9WV F 12 1555 1555 1.39 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 CRYST1 164.331 164.331 164.331 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006085 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006085 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006085 0.00000 CONECT 29 3629 CONECT 84 4069 CONECT 175 4041 CONECT 318 2175 CONECT 414 503 CONECT 503 414 CONECT 684 1051 CONECT 1051 684 CONECT 2131 4083 CONECT 2175 318 CONECT 2205 2383 CONECT 2383 2205 CONECT 3629 29 CONECT 3697 3728 CONECT 3728 3697 CONECT 3925 3926 3927 3929 CONECT 3926 3925 CONECT 3927 3925 CONECT 3928 3930 3931 3941 CONECT 3929 3925 3931 CONECT 3930 3928 CONECT 3931 3928 3929 3932 CONECT 3932 3931 3934 CONECT 3933 3935 3937 3938 CONECT 3934 3932 3935 CONECT 3935 3933 3934 CONECT 3936 3939 3940 CONECT 3937 3933 3939 CONECT 3938 3933 3940 CONECT 3939 3936 3937 CONECT 3940 3936 3938 CONECT 3941 3928 3942 CONECT 3942 3941 3943 3947 CONECT 3943 3942 3944 CONECT 3944 3943 3945 CONECT 3945 3944 3946 CONECT 3946 3945 4038 CONECT 3947 3942 3948 3949 CONECT 3948 3947 CONECT 3949 3947 3950 3951 CONECT 3950 3949 CONECT 3951 3949 3952 3956 CONECT 3952 3951 3953 CONECT 3953 3952 3954 3955 CONECT 3954 3953 CONECT 3955 3953 CONECT 3956 3951 3957 3958 CONECT 3957 3956 CONECT 3958 3956 CONECT 3969 3979 CONECT 3979 3969 3991 CONECT 3980 3988 CONECT 3981 3989 CONECT 3982 3985 3989 CONECT 3983 3984 3986 3989 CONECT 3984 3983 CONECT 3985 3982 3990 CONECT 3986 3983 3990 CONECT 3987 3990 3991 CONECT 3988 3980 3991 3992 CONECT 3989 3981 3982 3983 CONECT 3990 3985 3986 3987 CONECT 3991 3979 3987 3988 CONECT 3992 3988 CONECT 4025 4029 CONECT 4029 4025 4030 CONECT 4030 4029 4031 CONECT 4031 4030 4032 4038 CONECT 4032 4031 4033 CONECT 4033 4032 4034 4035 CONECT 4034 4033 CONECT 4035 4033 4036 CONECT 4036 4035 4037 CONECT 4037 4036 CONECT 4038 3946 4031 4039 CONECT 4039 4038 CONECT 4041 175 4042 4052 CONECT 4042 4041 4043 4049 CONECT 4043 4042 4044 4050 CONECT 4044 4043 4045 4051 CONECT 4045 4044 4046 4052 CONECT 4046 4045 4053 CONECT 4047 4048 4049 4054 CONECT 4048 4047 CONECT 4049 4042 4047 CONECT 4050 4043 CONECT 4051 4044 4055 CONECT 4052 4041 4045 CONECT 4053 4046 CONECT 4054 4047 CONECT 4055 4051 4056 4066 CONECT 4056 4055 4057 4063 CONECT 4057 4056 4058 4064 CONECT 4058 4057 4059 4065 CONECT 4059 4058 4060 4066 CONECT 4060 4059 4067 CONECT 4061 4062 4063 4068 CONECT 4062 4061 CONECT 4063 4056 4061 CONECT 4064 4057 CONECT 4065 4058 CONECT 4066 4055 4059 CONECT 4067 4060 CONECT 4068 4061 CONECT 4069 84 4070 4080 CONECT 4070 4069 4071 4077 CONECT 4071 4070 4072 4078 CONECT 4072 4071 4073 4079 CONECT 4073 4072 4074 4080 CONECT 4074 4073 4081 CONECT 4075 4076 4077 4082 CONECT 4076 4075 CONECT 4077 4070 4075 CONECT 4078 4071 CONECT 4079 4072 CONECT 4080 4069 4073 CONECT 4081 4074 CONECT 4082 4075 CONECT 4083 2131 4084 4094 CONECT 4084 4083 4085 4091 CONECT 4085 4084 4086 4092 CONECT 4086 4085 4087 4093 CONECT 4087 4086 4088 4094 CONECT 4088 4087 4095 CONECT 4089 4090 4091 4096 CONECT 4090 4089 CONECT 4091 4084 4089 CONECT 4092 4085 CONECT 4093 4086 CONECT 4094 4083 4087 CONECT 4095 4088 CONECT 4096 4089 CONECT 4097 4098 4099 CONECT 4098 4097 CONECT 4099 4097 4100 4101 CONECT 4100 4099 CONECT 4101 4099 4102 CONECT 4102 4101 CONECT 4103 4104 4105 CONECT 4104 4103 CONECT 4105 4103 4106 4107 CONECT 4106 4105 CONECT 4107 4105 4108 CONECT 4108 4107 MASTER 414 0 13 7 37 0 0 6 4174 3 144 41 END