data_5W7V # _entry.id 5W7V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5W7V pdb_00005w7v 10.2210/pdb5w7v/pdb WWPDB D_1000228525 ? ? EMDB EMD-8781 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-03-14 2 'Structure model' 1 1 2018-03-28 3 'Structure model' 1 2 2018-04-18 4 'Structure model' 1 3 2018-07-18 5 'Structure model' 1 4 2020-01-01 6 'Structure model' 1 5 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 5 'Structure model' 'Author supporting evidence' 7 6 'Structure model' 'Data collection' 8 6 'Structure model' 'Database references' 9 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 4 'Structure model' em_imaging_optics 4 5 'Structure model' pdbx_audit_support 5 6 'Structure model' chem_comp_atom 6 6 'Structure model' chem_comp_bond 7 6 'Structure model' database_2 8 6 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.pdbx_database_id_PubMed' 3 2 'Structure model' '_citation.title' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' 7 4 'Structure model' '_em_imaging_optics.energyfilter_name' 8 5 'Structure model' '_pdbx_audit_support.funding_organization' 9 6 'Structure model' '_database_2.pdbx_DOI' 10 6 'Structure model' '_database_2.pdbx_database_accession' 11 6 'Structure model' '_pdbx_struct_oper_list.name' 12 6 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 13 6 'Structure model' '_pdbx_struct_oper_list.type' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5W7V _pdbx_database_status.recvd_initial_deposition_date 2017-06-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'CryoEM structure of the segment, DLIIKGISVHI, assembled into a triple-helical fibril' _pdbx_database_related.db_id EMD-8781 _pdbx_database_related.content_type 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Guenther, E.L.' 1 ? 'Ge, P.' 2 ? 'Eisenberg, D.S.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat. Struct. Mol. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1545-9985 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 25 _citation.language ? _citation.page_first 311 _citation.page_last 319 _citation.title 'Atomic-level evidence for packing and positional amyloid polymorphism by segment from TDP-43 RRM2.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41594-018-0045-5 _citation.pdbx_database_id_PubMed 29531287 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Guenther, E.L.' 1 ? primary 'Ge, P.' 2 ? primary 'Trinh, H.' 3 ? primary 'Sawaya, M.R.' 4 ? primary 'Cascio, D.' 5 ? primary 'Boyer, D.R.' 6 ? primary 'Gonen, T.' 7 ? primary 'Zhou, Z.H.' 8 ? primary 'Eisenberg, D.S.' 9 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'TAR DNA-binding protein 43' _entity.formula_weight 1209.479 _entity.pdbx_number_of_molecules 9 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RRM2 peptide (UNP residues 247-257)' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TDP-43, DLIIKGISVHI' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code DLIIKGISVHI _entity_poly.pdbx_seq_one_letter_code_can DLIIKGISVHI _entity_poly.pdbx_strand_id 1,3,2,6,5,4,7,0,8 _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 LEU n 1 3 ILE n 1 4 ILE n 1 5 LYS n 1 6 GLY n 1 7 ILE n 1 8 SER n 1 9 VAL n 1 10 HIS n 1 11 ILE n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 11 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP 1 . n A 1 2 LEU 2 2 2 LEU LEU 1 . n A 1 3 ILE 3 3 3 ILE ILE 1 . n A 1 4 ILE 4 4 4 ILE ILE 1 . n A 1 5 LYS 5 5 5 LYS LYS 1 . n A 1 6 GLY 6 6 6 GLY GLY 1 . n A 1 7 ILE 7 7 7 ILE ILE 1 . n A 1 8 SER 8 8 8 SER SER 1 . n A 1 9 VAL 9 9 9 VAL VAL 1 . n A 1 10 HIS 10 10 10 HIS HIS 1 . n A 1 11 ILE 11 11 11 ILE ILE 1 . n B 1 1 ASP 1 1 1 ASP ASP 3 . n B 1 2 LEU 2 2 2 LEU LEU 3 . n B 1 3 ILE 3 3 3 ILE ILE 3 . n B 1 4 ILE 4 4 4 ILE ILE 3 . n B 1 5 LYS 5 5 5 LYS LYS 3 . n B 1 6 GLY 6 6 6 GLY GLY 3 . n B 1 7 ILE 7 7 7 ILE ILE 3 . n B 1 8 SER 8 8 8 SER SER 3 . n B 1 9 VAL 9 9 9 VAL VAL 3 . n B 1 10 HIS 10 10 10 HIS HIS 3 . n B 1 11 ILE 11 11 11 ILE ILE 3 . n C 1 1 ASP 1 1 1 ASP ASP 2 . n C 1 2 LEU 2 2 2 LEU LEU 2 . n C 1 3 ILE 3 3 3 ILE ILE 2 . n C 1 4 ILE 4 4 4 ILE ILE 2 . n C 1 5 LYS 5 5 5 LYS LYS 2 . n C 1 6 GLY 6 6 6 GLY GLY 2 . n C 1 7 ILE 7 7 7 ILE ILE 2 . n C 1 8 SER 8 8 8 SER SER 2 . n C 1 9 VAL 9 9 9 VAL VAL 2 . n C 1 10 HIS 10 10 10 HIS HIS 2 . n C 1 11 ILE 11 11 11 ILE ILE 2 . n D 1 1 ASP 1 1 1 ASP ASP 6 . n D 1 2 LEU 2 2 2 LEU LEU 6 . n D 1 3 ILE 3 3 3 ILE ILE 6 . n D 1 4 ILE 4 4 4 ILE ILE 6 . n D 1 5 LYS 5 5 5 LYS LYS 6 . n D 1 6 GLY 6 6 6 GLY GLY 6 . n D 1 7 ILE 7 7 7 ILE ILE 6 . n D 1 8 SER 8 8 8 SER SER 6 . n D 1 9 VAL 9 9 9 VAL VAL 6 . n D 1 10 HIS 10 10 10 HIS HIS 6 . n D 1 11 ILE 11 11 11 ILE ILE 6 . n E 1 1 ASP 1 1 1 ASP ASP 5 . n E 1 2 LEU 2 2 2 LEU LEU 5 . n E 1 3 ILE 3 3 3 ILE ILE 5 . n E 1 4 ILE 4 4 4 ILE ILE 5 . n E 1 5 LYS 5 5 5 LYS LYS 5 . n E 1 6 GLY 6 6 6 GLY GLY 5 . n E 1 7 ILE 7 7 7 ILE ILE 5 . n E 1 8 SER 8 8 8 SER SER 5 . n E 1 9 VAL 9 9 9 VAL VAL 5 . n E 1 10 HIS 10 10 10 HIS HIS 5 . n E 1 11 ILE 11 11 11 ILE ILE 5 . n F 1 1 ASP 1 1 1 ASP ASP 4 . n F 1 2 LEU 2 2 2 LEU LEU 4 . n F 1 3 ILE 3 3 3 ILE ILE 4 . n F 1 4 ILE 4 4 4 ILE ILE 4 . n F 1 5 LYS 5 5 5 LYS LYS 4 . n F 1 6 GLY 6 6 6 GLY GLY 4 . n F 1 7 ILE 7 7 7 ILE ILE 4 . n F 1 8 SER 8 8 8 SER SER 4 . n F 1 9 VAL 9 9 9 VAL VAL 4 . n F 1 10 HIS 10 10 10 HIS HIS 4 . n F 1 11 ILE 11 11 11 ILE ILE 4 . n G 1 1 ASP 1 1 1 ASP ASP 7 . n G 1 2 LEU 2 2 2 LEU LEU 7 . n G 1 3 ILE 3 3 3 ILE ILE 7 . n G 1 4 ILE 4 4 4 ILE ILE 7 . n G 1 5 LYS 5 5 5 LYS LYS 7 . n G 1 6 GLY 6 6 6 GLY GLY 7 . n G 1 7 ILE 7 7 7 ILE ILE 7 . n G 1 8 SER 8 8 8 SER SER 7 . n G 1 9 VAL 9 9 9 VAL VAL 7 . n G 1 10 HIS 10 10 10 HIS HIS 7 . n G 1 11 ILE 11 11 11 ILE ILE 7 . n H 1 1 ASP 1 1 1 ASP ASP 0 . n H 1 2 LEU 2 2 2 LEU LEU 0 . n H 1 3 ILE 3 3 3 ILE ILE 0 . n H 1 4 ILE 4 4 4 ILE ILE 0 . n H 1 5 LYS 5 5 5 LYS LYS 0 . n H 1 6 GLY 6 6 6 GLY GLY 0 . n H 1 7 ILE 7 7 ? ? ? 0 . n H 1 8 SER 8 8 ? ? ? 0 . n H 1 9 VAL 9 9 ? ? ? 0 . n H 1 10 HIS 10 10 ? ? ? 0 . n H 1 11 ILE 11 11 ? ? ? 0 . n I 1 1 ASP 1 1 1 ASP ASP 8 . n I 1 2 LEU 2 2 2 LEU LEU 8 . n I 1 3 ILE 3 3 3 ILE ILE 8 . n I 1 4 ILE 4 4 4 ILE ILE 8 . n I 1 5 LYS 5 5 5 LYS LYS 8 . n I 1 6 GLY 6 6 ? ? ? 8 . n I 1 7 ILE 7 7 ? ? ? 8 . n I 1 8 SER 8 8 ? ? ? 8 . n I 1 9 VAL 9 9 ? ? ? 8 . n I 1 10 HIS 10 10 ? ? ? 8 . n I 1 11 ILE 11 11 ? ? ? 8 . n # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.10.1_2155: _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5W7V _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.000 _cell.length_a_esd ? _cell.length_b 1.000 _cell.length_b_esd ? _cell.length_c 1.000 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5W7V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5W7V _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.entry_id 5W7V _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_d_res_high . _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.007 ? 20370 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.771 ? 27210 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 10.106 ? 12300 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.063 ? 3840 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.002 ? 3060 ? f_plane_restr ? ? # _struct.entry_id 5W7V _struct.title 'CryoEM structure of the segment, DLIIKGISVHI, assembled into a triple-helical fibril' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5W7V _struct_keywords.text 'Amyloid, steric zipper, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TADBP_HUMAN _struct_ref.pdbx_db_accession Q13148 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DLIIKGISVHI _struct_ref.pdbx_align_begin 247 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5W7V 1 1 ? 11 ? Q13148 247 ? 257 ? 1 11 2 1 5W7V 3 1 ? 11 ? Q13148 247 ? 257 ? 1 11 3 1 5W7V 2 1 ? 11 ? Q13148 247 ? 257 ? 1 11 4 1 5W7V 6 1 ? 11 ? Q13148 247 ? 257 ? 1 11 5 1 5W7V 5 1 ? 11 ? Q13148 247 ? 257 ? 1 11 6 1 5W7V 4 1 ? 11 ? Q13148 247 ? 257 ? 1 11 7 1 5W7V 7 1 ? 11 ? Q13148 247 ? 257 ? 1 11 8 1 5W7V 0 1 ? 11 ? Q13148 247 ? 257 ? 1 11 9 1 5W7V 8 1 ? 11 ? Q13148 247 ? 257 ? 1 11 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? 270-meric 270 2 'helical asymmetric unit' ? nonameric 9 3 'helical asymmetric unit, std helical frame' ? nonameric 9 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-30)' A,B,C,D,E,F,G,H,I 2 16 A,B,C,D,E,F,G,H,I 3 H A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] H 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 1 'helical symmetry operation' ? ? 0.99334264 -0.11519721 0.00000000 0.00000 0.11519721 0.99334264 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -23.97000 2 'helical symmetry operation' ? ? -0.40396045 0.91477645 0.00000000 0.00000 -0.91477645 -0.40396045 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -22.37200 3 'helical symmetry operation' ? ? -0.58400884 -0.81174730 0.00000000 0.00000 0.81174730 -0.58400884 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -20.77400 4 'helical symmetry operation' ? ? 0.99573759 -0.09223156 0.00000000 0.00000 0.09223156 0.99573759 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -19.17600 5 'helical symmetry operation' ? ? -0.42497372 0.90520569 0.00000000 0.00000 -0.90520569 -0.42497372 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -17.57800 6 'helical symmetry operation' ? ? -0.56511100 -0.82501488 0.00000000 0.00000 0.82501488 -0.56511100 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -15.98000 7 'helical symmetry operation' ? ? 0.99760165 -0.06921673 0.00000000 0.00000 0.06921673 0.99760165 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -14.38200 8 'helical symmetry operation' ? ? -0.44576041 0.89515231 0.00000000 0.00000 -0.89515231 -0.44576041 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -12.78400 9 'helical symmetry operation' ? ? -0.54591187 -0.83784260 0.00000000 0.00000 0.83784260 -0.54591187 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -11.18600 10 'helical symmetry operation' ? ? 0.99893383 -0.04616500 0.00000000 0.00000 0.04616500 0.99893383 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -9.58800 11 'helical symmetry operation' ? ? -0.46630944 0.88462167 0.00000000 0.00000 -0.88462167 -0.46630944 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -7.99000 12 'helical symmetry operation' ? ? -0.52642169 -0.85022362 0.00000000 0.00000 0.85022362 -0.52642169 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -6.39200 13 'helical symmetry operation' ? ? 0.99973342 -0.02308865 0.00000000 0.00000 0.02308865 0.99973342 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -4.79400 14 'helical symmetry operation' ? ? -0.48660986 0.87361939 0.00000000 0.00000 -0.87361939 -0.48660986 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -3.19600 15 'helical symmetry operation' ? ? -0.50665084 -0.86215134 0.00000000 0.00000 0.86215134 -0.50665084 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 -1.59800 16 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 17 'helical symmetry operation' ? ? -0.50665084 0.86215134 0.00000000 0.00000 -0.86215134 -0.50665084 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 1.59800 18 'helical symmetry operation' ? ? -0.48660986 -0.87361939 0.00000000 0.00000 0.87361939 -0.48660986 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 3.19600 19 'helical symmetry operation' ? ? 0.99973342 0.02308865 0.00000000 0.00000 -0.02308865 0.99973342 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 4.79400 20 'helical symmetry operation' ? ? -0.52642169 0.85022362 0.00000000 0.00000 -0.85022362 -0.52642169 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 6.39200 21 'helical symmetry operation' ? ? -0.46630944 -0.88462167 0.00000000 0.00000 0.88462167 -0.46630944 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 7.99000 22 'helical symmetry operation' ? ? 0.99893383 0.04616500 0.00000000 0.00000 -0.04616500 0.99893383 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 9.58800 23 'helical symmetry operation' ? ? -0.54591187 0.83784260 0.00000000 0.00000 -0.83784260 -0.54591187 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 11.18600 24 'helical symmetry operation' ? ? -0.44576041 -0.89515231 0.00000000 0.00000 0.89515231 -0.44576041 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 12.78400 25 'helical symmetry operation' ? ? 0.99760165 0.06921673 0.00000000 0.00000 -0.06921673 0.99760165 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 14.38200 26 'helical symmetry operation' ? ? -0.56511100 0.82501488 0.00000000 0.00000 -0.82501488 -0.56511100 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 15.98000 27 'helical symmetry operation' ? ? -0.42497372 -0.90520569 0.00000000 0.00000 0.90520569 -0.42497372 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 17.57800 28 'helical symmetry operation' ? ? 0.99573759 0.09223156 0.00000000 0.00000 -0.09223156 0.99573759 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 19.17600 29 'helical symmetry operation' ? ? -0.58400884 0.81174730 0.00000000 0.00000 -0.81174730 -0.58400884 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 20.77400 30 'helical symmetry operation' ? ? -0.40396045 -0.91477645 0.00000000 0.00000 0.91477645 -0.40396045 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 22.37200 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ILE _pdbx_validate_torsion.auth_asym_id 4 _pdbx_validate_torsion.auth_seq_id 7 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -101.51 _pdbx_validate_torsion.psi -64.89 # _pdbx_helical_symmetry.entry_id 5W7V _pdbx_helical_symmetry.number_of_operations 30 _pdbx_helical_symmetry.rotation_per_n_subunits -120.441 _pdbx_helical_symmetry.rise_per_n_subunits 1.598 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # _em_3d_fitting.entry_id 5W7V _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'AB INITIO MODEL' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 5W7V _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 18818 _em_3d_reconstruction.resolution 3.8 _em_3d_reconstruction.resolution_method 'FSC 0.5 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.euler_angles_details ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'DLIIKGISVHI fibril' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 5W7V _em_image_scans.id 1 _em_image_scans.dimension_height ? _em_image_scans.dimension_width ? _em_image_scans.frames_per_image 50 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image 4-20 _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 5W7V _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 70 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.citation_id ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 295 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 5W7V _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 5W7V _em_experiment.id 1 _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 0 ILE 7 ? H ILE 7 2 1 Y 1 0 SER 8 ? H SER 8 3 1 Y 1 0 VAL 9 ? H VAL 9 4 1 Y 1 0 HIS 10 ? H HIS 10 5 1 Y 1 0 ILE 11 ? H ILE 11 6 1 Y 1 8 GLY 6 ? I GLY 6 7 1 Y 1 8 ILE 7 ? I ILE 7 8 1 Y 1 8 SER 8 ? I SER 8 9 1 Y 1 8 VAL 9 ? I VAL 9 10 1 Y 1 8 HIS 10 ? I HIS 10 11 1 Y 1 8 ILE 11 ? I ILE 11 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASP N N N N 1 ASP CA C N S 2 ASP C C N N 3 ASP O O N N 4 ASP CB C N N 5 ASP CG C N N 6 ASP OD1 O N N 7 ASP OD2 O N N 8 ASP OXT O N N 9 ASP H H N N 10 ASP H2 H N N 11 ASP HA H N N 12 ASP HB2 H N N 13 ASP HB3 H N N 14 ASP HD2 H N N 15 ASP HXT H N N 16 GLY N N N N 17 GLY CA C N N 18 GLY C C N N 19 GLY O O N N 20 GLY OXT O N N 21 GLY H H N N 22 GLY H2 H N N 23 GLY HA2 H N N 24 GLY HA3 H N N 25 GLY HXT H N N 26 HIS N N N N 27 HIS CA C N S 28 HIS C C N N 29 HIS O O N N 30 HIS CB C N N 31 HIS CG C Y N 32 HIS ND1 N Y N 33 HIS CD2 C Y N 34 HIS CE1 C Y N 35 HIS NE2 N Y N 36 HIS OXT O N N 37 HIS H H N N 38 HIS H2 H N N 39 HIS HA H N N 40 HIS HB2 H N N 41 HIS HB3 H N N 42 HIS HD1 H N N 43 HIS HD2 H N N 44 HIS HE1 H N N 45 HIS HE2 H N N 46 HIS HXT H N N 47 ILE N N N N 48 ILE CA C N S 49 ILE C C N N 50 ILE O O N N 51 ILE CB C N S 52 ILE CG1 C N N 53 ILE CG2 C N N 54 ILE CD1 C N N 55 ILE OXT O N N 56 ILE H H N N 57 ILE H2 H N N 58 ILE HA H N N 59 ILE HB H N N 60 ILE HG12 H N N 61 ILE HG13 H N N 62 ILE HG21 H N N 63 ILE HG22 H N N 64 ILE HG23 H N N 65 ILE HD11 H N N 66 ILE HD12 H N N 67 ILE HD13 H N N 68 ILE HXT H N N 69 LEU N N N N 70 LEU CA C N S 71 LEU C C N N 72 LEU O O N N 73 LEU CB C N N 74 LEU CG C N N 75 LEU CD1 C N N 76 LEU CD2 C N N 77 LEU OXT O N N 78 LEU H H N N 79 LEU H2 H N N 80 LEU HA H N N 81 LEU HB2 H N N 82 LEU HB3 H N N 83 LEU HG H N N 84 LEU HD11 H N N 85 LEU HD12 H N N 86 LEU HD13 H N N 87 LEU HD21 H N N 88 LEU HD22 H N N 89 LEU HD23 H N N 90 LEU HXT H N N 91 LYS N N N N 92 LYS CA C N S 93 LYS C C N N 94 LYS O O N N 95 LYS CB C N N 96 LYS CG C N N 97 LYS CD C N N 98 LYS CE C N N 99 LYS NZ N N N 100 LYS OXT O N N 101 LYS H H N N 102 LYS H2 H N N 103 LYS HA H N N 104 LYS HB2 H N N 105 LYS HB3 H N N 106 LYS HG2 H N N 107 LYS HG3 H N N 108 LYS HD2 H N N 109 LYS HD3 H N N 110 LYS HE2 H N N 111 LYS HE3 H N N 112 LYS HZ1 H N N 113 LYS HZ2 H N N 114 LYS HZ3 H N N 115 LYS HXT H N N 116 SER N N N N 117 SER CA C N S 118 SER C C N N 119 SER O O N N 120 SER CB C N N 121 SER OG O N N 122 SER OXT O N N 123 SER H H N N 124 SER H2 H N N 125 SER HA H N N 126 SER HB2 H N N 127 SER HB3 H N N 128 SER HG H N N 129 SER HXT H N N 130 VAL N N N N 131 VAL CA C N S 132 VAL C C N N 133 VAL O O N N 134 VAL CB C N N 135 VAL CG1 C N N 136 VAL CG2 C N N 137 VAL OXT O N N 138 VAL H H N N 139 VAL H2 H N N 140 VAL HA H N N 141 VAL HB H N N 142 VAL HG11 H N N 143 VAL HG12 H N N 144 VAL HG13 H N N 145 VAL HG21 H N N 146 VAL HG22 H N N 147 VAL HG23 H N N 148 VAL HXT H N N 149 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASP N CA sing N N 1 ASP N H sing N N 2 ASP N H2 sing N N 3 ASP CA C sing N N 4 ASP CA CB sing N N 5 ASP CA HA sing N N 6 ASP C O doub N N 7 ASP C OXT sing N N 8 ASP CB CG sing N N 9 ASP CB HB2 sing N N 10 ASP CB HB3 sing N N 11 ASP CG OD1 doub N N 12 ASP CG OD2 sing N N 13 ASP OD2 HD2 sing N N 14 ASP OXT HXT sing N N 15 GLY N CA sing N N 16 GLY N H sing N N 17 GLY N H2 sing N N 18 GLY CA C sing N N 19 GLY CA HA2 sing N N 20 GLY CA HA3 sing N N 21 GLY C O doub N N 22 GLY C OXT sing N N 23 GLY OXT HXT sing N N 24 HIS N CA sing N N 25 HIS N H sing N N 26 HIS N H2 sing N N 27 HIS CA C sing N N 28 HIS CA CB sing N N 29 HIS CA HA sing N N 30 HIS C O doub N N 31 HIS C OXT sing N N 32 HIS CB CG sing N N 33 HIS CB HB2 sing N N 34 HIS CB HB3 sing N N 35 HIS CG ND1 sing Y N 36 HIS CG CD2 doub Y N 37 HIS ND1 CE1 doub Y N 38 HIS ND1 HD1 sing N N 39 HIS CD2 NE2 sing Y N 40 HIS CD2 HD2 sing N N 41 HIS CE1 NE2 sing Y N 42 HIS CE1 HE1 sing N N 43 HIS NE2 HE2 sing N N 44 HIS OXT HXT sing N N 45 ILE N CA sing N N 46 ILE N H sing N N 47 ILE N H2 sing N N 48 ILE CA C sing N N 49 ILE CA CB sing N N 50 ILE CA HA sing N N 51 ILE C O doub N N 52 ILE C OXT sing N N 53 ILE CB CG1 sing N N 54 ILE CB CG2 sing N N 55 ILE CB HB sing N N 56 ILE CG1 CD1 sing N N 57 ILE CG1 HG12 sing N N 58 ILE CG1 HG13 sing N N 59 ILE CG2 HG21 sing N N 60 ILE CG2 HG22 sing N N 61 ILE CG2 HG23 sing N N 62 ILE CD1 HD11 sing N N 63 ILE CD1 HD12 sing N N 64 ILE CD1 HD13 sing N N 65 ILE OXT HXT sing N N 66 LEU N CA sing N N 67 LEU N H sing N N 68 LEU N H2 sing N N 69 LEU CA C sing N N 70 LEU CA CB sing N N 71 LEU CA HA sing N N 72 LEU C O doub N N 73 LEU C OXT sing N N 74 LEU CB CG sing N N 75 LEU CB HB2 sing N N 76 LEU CB HB3 sing N N 77 LEU CG CD1 sing N N 78 LEU CG CD2 sing N N 79 LEU CG HG sing N N 80 LEU CD1 HD11 sing N N 81 LEU CD1 HD12 sing N N 82 LEU CD1 HD13 sing N N 83 LEU CD2 HD21 sing N N 84 LEU CD2 HD22 sing N N 85 LEU CD2 HD23 sing N N 86 LEU OXT HXT sing N N 87 LYS N CA sing N N 88 LYS N H sing N N 89 LYS N H2 sing N N 90 LYS CA C sing N N 91 LYS CA CB sing N N 92 LYS CA HA sing N N 93 LYS C O doub N N 94 LYS C OXT sing N N 95 LYS CB CG sing N N 96 LYS CB HB2 sing N N 97 LYS CB HB3 sing N N 98 LYS CG CD sing N N 99 LYS CG HG2 sing N N 100 LYS CG HG3 sing N N 101 LYS CD CE sing N N 102 LYS CD HD2 sing N N 103 LYS CD HD3 sing N N 104 LYS CE NZ sing N N 105 LYS CE HE2 sing N N 106 LYS CE HE3 sing N N 107 LYS NZ HZ1 sing N N 108 LYS NZ HZ2 sing N N 109 LYS NZ HZ3 sing N N 110 LYS OXT HXT sing N N 111 SER N CA sing N N 112 SER N H sing N N 113 SER N H2 sing N N 114 SER CA C sing N N 115 SER CA CB sing N N 116 SER CA HA sing N N 117 SER C O doub N N 118 SER C OXT sing N N 119 SER CB OG sing N N 120 SER CB HB2 sing N N 121 SER CB HB3 sing N N 122 SER OG HG sing N N 123 SER OXT HXT sing N N 124 VAL N CA sing N N 125 VAL N H sing N N 126 VAL N H2 sing N N 127 VAL CA C sing N N 128 VAL CA CB sing N N 129 VAL CA HA sing N N 130 VAL C O doub N N 131 VAL C OXT sing N N 132 VAL CB CG1 sing N N 133 VAL CB CG2 sing N N 134 VAL CB HB sing N N 135 VAL CG1 HG11 sing N N 136 VAL CG1 HG12 sing N N 137 VAL CG1 HG13 sing N N 138 VAL CG2 HG21 sing N N 139 VAL CG2 HG22 sing N N 140 VAL CG2 HG23 sing N N 141 VAL OXT HXT sing N N 142 # _em_buffer_component.buffer_id 1 _em_buffer_component.id 1 _em_buffer_component.concentration ? _em_buffer_component.concentration_units ? _em_buffer_component.formula H2O _em_buffer_component.name Water # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.cell ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit -120.441 _em_helical_entity.axial_rise_per_subunit 1.598 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 1.2 _em_image_recording.average_exposure_time 0.2 _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 QUANTUM (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 610 # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name 'GIF Quantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? EMAN 1.9 1 ? ? 2 'IMAGE ACQUISITION' ? Leginon 3.2 ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND 4.0 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? ? ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 CLASSIFICATION ? ? ? 1 ? ? 12 RECONSTRUCTION '+IHRSR implementation' RELION 1.4 1 ? ? 13 'MODEL REFINEMENT' ? ? ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM071940 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 5W7V _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_