HEADER TRANSFERASE 21-JUN-17 5W80 TITLE TOXOPLASMA GONDII CDPK1 IN COMPLEX WITH INHIBITOR GXJ-237 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-DOMAIN PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: CDPK1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15-MHL KEYWDS CDPK, PARASITOLOGY, ATP-BINDING, KINASE, NUCLEOTIDE-BINDING, KEYWDS 2 SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE, STRUCTURAL GENOMICS, KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR M.EL BAKKOURI,D.LOVATO,P.LOPPNAU,Y.H.LIN,F.RUTAGANARIA,M.S.LOPEZ, AUTHOR 2 L.SHOKAT,C.BOUNTRA,A.M.EDWARDS,C.H.ARROWSMITH,D.SIBLEY,J.R.WALKER, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 04-OCT-23 5W80 1 REMARK REVDAT 1 19-JUL-17 5W80 0 JRNL AUTH M.EL BAKKOURI,D.LOVATO,P.LOPPNAU,Y.H.LIN,F.RUTAGANARIA, JRNL AUTH 2 M.S.LOPEZ,L.SHOKAT,C.BOUNTRA,A.M.EDWARDS,C.H.ARROWSMITH, JRNL AUTH 3 D.SIBLEY,R.HUI,J.R.WALKER, JRNL AUTH 4 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL TOXOPLASMA GONDII CDPK1 IN COMPLEX WITH INHIBITOR GXJ-237 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1485 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2925 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1930 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2764 REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 161 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3508 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 244 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.60480 REMARK 3 B22 (A**2) : -2.85420 REMARK 3 B33 (A**2) : -5.75050 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.57820 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.230 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.193 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.169 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.931 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.169 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7205 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 13012 ; 2.800 ; HARMONIC REMARK 3 TORSION ANGLES : 1618 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 97 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1117 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7205 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 489 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7967 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 0.80 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.07 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.13 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|43 - 99 } REMARK 3 ORIGIN FOR THE GROUP (A): -13.8193 -15.5747 104.5215 REMARK 3 T TENSOR REMARK 3 T11: 0.0103 T22: -0.0796 REMARK 3 T33: 0.0215 T12: -0.0076 REMARK 3 T13: -0.0081 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 2.4494 L22: 3.5854 REMARK 3 L33: 2.3486 L12: -1.5292 REMARK 3 L13: 1.3604 L23: -1.2898 REMARK 3 S TENSOR REMARK 3 S11: -0.1851 S12: -0.1492 S13: 0.0199 REMARK 3 S21: 0.5373 S22: -0.0008 S23: -0.1314 REMARK 3 S31: -0.3364 S32: 0.1383 S33: 0.1860 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|100 - 262 } REMARK 3 ORIGIN FOR THE GROUP (A): -15.6506 -13.8833 85.7234 REMARK 3 T TENSOR REMARK 3 T11: -0.0886 T22: -0.0190 REMARK 3 T33: 0.0229 T12: 0.0252 REMARK 3 T13: 0.0186 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.9073 L22: 1.5892 REMARK 3 L33: 1.3659 L12: -0.2352 REMARK 3 L13: 0.5685 L23: -0.9264 REMARK 3 S TENSOR REMARK 3 S11: 0.0745 S12: 0.1641 S13: -0.0647 REMARK 3 S21: -0.1167 S22: -0.1870 S23: -0.0778 REMARK 3 S31: 0.1881 S32: 0.1610 S33: 0.1126 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|263 - 380 } REMARK 3 ORIGIN FOR THE GROUP (A): -8.9655 -7.6177 83.4065 REMARK 3 T TENSOR REMARK 3 T11: -0.1122 T22: -0.0391 REMARK 3 T33: -0.0780 T12: 0.0432 REMARK 3 T13: 0.0336 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.0331 L22: 1.5343 REMARK 3 L33: 1.1315 L12: 0.0027 REMARK 3 L13: 0.5602 L23: 0.3379 REMARK 3 S TENSOR REMARK 3 S11: 0.0434 S12: 0.2858 S13: -0.0518 REMARK 3 S21: -0.0189 S22: -0.0142 S23: -0.1411 REMARK 3 S31: 0.1199 S32: 0.1820 S33: -0.0291 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|381 - 438 } REMARK 3 ORIGIN FOR THE GROUP (A): 3.1525 -5.3689 113.2093 REMARK 3 T TENSOR REMARK 3 T11: 0.0650 T22: -0.0844 REMARK 3 T33: 0.0586 T12: -0.0154 REMARK 3 T13: -0.1419 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.0688 L22: 4.8252 REMARK 3 L33: 2.6285 L12: -1.3804 REMARK 3 L13: 0.8147 L23: -1.6602 REMARK 3 S TENSOR REMARK 3 S11: 0.0263 S12: 0.0975 S13: -0.1097 REMARK 3 S21: 0.2146 S22: 0.0105 S23: -0.1157 REMARK 3 S31: 0.1127 S32: 0.0766 S33: -0.0369 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|439 - 507 } REMARK 3 ORIGIN FOR THE GROUP (A): 5.9523 5.9998 85.3394 REMARK 3 T TENSOR REMARK 3 T11: -0.1104 T22: -0.0672 REMARK 3 T33: 0.0662 T12: 0.0328 REMARK 3 T13: 0.0084 T23: 0.0493 REMARK 3 L TENSOR REMARK 3 L11: 5.2709 L22: 1.0624 REMARK 3 L33: 3.3688 L12: -0.5456 REMARK 3 L13: -1.8461 L23: 0.8914 REMARK 3 S TENSOR REMARK 3 S11: 0.1445 S12: 0.1114 S13: 0.4964 REMARK 3 S21: 0.0617 S22: 0.0978 S23: -0.0605 REMARK 3 S31: -0.2014 S32: -0.0828 S33: -0.2423 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5W80 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228575. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MARMOSAIC CCD300 REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.12 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30132 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4IH8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG8K, 0.2M NACL, 0.1M HEPES REMARK 280 PH7.5, 10 % GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.40750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 24 REMARK 465 PRO A 25 REMARK 465 GLY A 26 REMARK 465 SER A 27 REMARK 465 MET A 28 REMARK 465 MET A 29 REMARK 465 ASP A 30 REMARK 465 HIS A 31 REMARK 465 LEU A 32 REMARK 465 HIS A 33 REMARK 465 ALA A 34 REMARK 465 THR A 35 REMARK 465 PRO A 36 REMARK 465 GLY A 37 REMARK 465 MET A 38 REMARK 465 PHE A 39 REMARK 465 VAL A 40 REMARK 465 GLN A 41 REMARK 465 HIS A 42 REMARK 465 SER A 43 REMARK 465 GLU A 314 REMARK 465 GLN A 315 REMARK 465 ILE A 316 REMARK 465 SER A 317 REMARK 465 ASP A 415 REMARK 465 PHE A 416 REMARK 465 ASP A 417 REMARK 465 LYS A 418 REMARK 465 ASN A 419 REMARK 465 GLY A 420 REMARK 465 TYR A 421 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 44 OG1 CG2 REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 LYS A 275 CD CE NZ REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 LYS A 313 CG CD CE NZ REMARK 470 VAL A 318 CG1 CG2 REMARK 470 ASP A 319 CG OD1 OD2 REMARK 470 VAL A 320 CG1 CG2 REMARK 470 LYS A 350 CE NZ REMARK 470 LYS A 366 CG CD CE NZ REMARK 470 LYS A 369 CG CD CE NZ REMARK 470 ASP A 376 CG OD1 OD2 REMARK 470 GLU A 382 CG CD OE1 OE2 REMARK 470 LYS A 385 CG CD CE NZ REMARK 470 GLU A 386 CG CD OE1 OE2 REMARK 470 MET A 390 CG SD CE REMARK 470 LYS A 391 CG CD CE NZ REMARK 470 GLN A 393 CG CD OE1 NE2 REMARK 470 LEU A 398 CG CD1 CD2 REMARK 470 SER A 401 OG REMARK 470 VAL A 414 CG1 CG2 REMARK 470 ILE A 422 CG1 CG2 CD1 REMARK 470 GLU A 426 CG CD OE1 OE2 REMARK 470 ARG A 445 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 475 CD OE1 OE2 REMARK 470 LYS A 486 CG CD CE NZ REMARK 470 ASN A 487 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 62 -3.17 75.29 REMARK 500 ASP A 120 -167.99 -128.38 REMARK 500 HIS A 172 -60.85 -92.06 REMARK 500 ARG A 173 -38.84 84.75 REMARK 500 GLU A 270 52.05 -96.45 REMARK 500 LEU A 289 36.10 -99.13 REMARK 500 MET A 397 63.77 -111.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 451 OD1 REMARK 620 2 ASP A 453 OD1 74.7 REMARK 620 3 SER A 455 OG 93.5 94.4 REMARK 620 4 LYS A 457 O 107.0 171.6 77.3 REMARK 620 5 HOH A 756 O 147.1 74.6 77.2 101.7 REMARK 620 6 HOH A 894 O 105.9 100.4 158.0 87.1 91.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9XJ A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 602 DBREF 5W80 A 30 507 UNP Q9BJF5 Q9BJF5_TOXGO 30 507 SEQADV 5W80 GLY A 24 UNP Q9BJF5 EXPRESSION TAG SEQADV 5W80 PRO A 25 UNP Q9BJF5 EXPRESSION TAG SEQADV 5W80 GLY A 26 UNP Q9BJF5 EXPRESSION TAG SEQADV 5W80 SER A 27 UNP Q9BJF5 EXPRESSION TAG SEQADV 5W80 MET A 28 UNP Q9BJF5 EXPRESSION TAG SEQADV 5W80 MET A 29 UNP Q9BJF5 EXPRESSION TAG SEQRES 1 A 484 GLY PRO GLY SER MET MET ASP HIS LEU HIS ALA THR PRO SEQRES 2 A 484 GLY MET PHE VAL GLN HIS SER THR ALA ILE PHE SER ASP SEQRES 3 A 484 ARG TYR LYS GLY GLN ARG VAL LEU GLY LYS GLY SER PHE SEQRES 4 A 484 GLY GLU VAL ILE LEU CYS LYS ASP LYS ILE THR GLY GLN SEQRES 5 A 484 GLU CYS ALA VAL LYS VAL ILE SER LYS ARG GLN VAL LYS SEQRES 6 A 484 GLN LYS THR ASP LYS GLU SER LEU LEU ARG GLU VAL GLN SEQRES 7 A 484 LEU LEU LYS GLN LEU ASP HIS PRO ASN ILE MET LYS LEU SEQRES 8 A 484 TYR GLU PHE PHE GLU ASP LYS GLY TYR PHE TYR LEU VAL SEQRES 9 A 484 GLY GLU VAL TYR THR GLY GLY GLU LEU PHE ASP GLU ILE SEQRES 10 A 484 ILE SER ARG LYS ARG PHE SER GLU VAL ASP ALA ALA ARG SEQRES 11 A 484 ILE ILE ARG GLN VAL LEU SER GLY ILE THR TYR MET HIS SEQRES 12 A 484 LYS ASN LYS ILE VAL HIS ARG ASP LEU LYS PRO GLU ASN SEQRES 13 A 484 LEU LEU LEU GLU SER LYS SER LYS ASP ALA ASN ILE ARG SEQRES 14 A 484 ILE ILE ASP PHE GLY LEU SER THR HIS PHE GLU ALA SER SEQRES 15 A 484 LYS LYS MET LYS ASP LYS ILE GLY THR ALA TYR TYR ILE SEQRES 16 A 484 ALA PRO GLU VAL LEU HIS GLY THR TYR ASP GLU LYS CYS SEQRES 17 A 484 ASP VAL TRP SER THR GLY VAL ILE LEU TYR ILE LEU LEU SEQRES 18 A 484 SER GLY CYS PRO PRO PHE ASN GLY ALA ASN GLU TYR ASP SEQRES 19 A 484 ILE LEU LYS LYS VAL GLU LYS GLY LYS TYR THR PHE GLU SEQRES 20 A 484 LEU PRO GLN TRP LYS LYS VAL SER GLU SER ALA LYS ASP SEQRES 21 A 484 LEU ILE ARG LYS MET LEU THR TYR VAL PRO SER MET ARG SEQRES 22 A 484 ILE SER ALA ARG ASP ALA LEU ASP HIS GLU TRP ILE GLN SEQRES 23 A 484 THR TYR THR LYS GLU GLN ILE SER VAL ASP VAL PRO SER SEQRES 24 A 484 LEU ASP ASN ALA ILE LEU ASN ILE ARG GLN PHE GLN GLY SEQRES 25 A 484 THR GLN LYS LEU ALA GLN ALA ALA LEU LEU TYR MET GLY SEQRES 26 A 484 SER LYS LEU THR SER GLN ASP GLU THR LYS GLU LEU THR SEQRES 27 A 484 ALA ILE PHE HIS LYS MET ASP LYS ASN GLY ASP GLY GLN SEQRES 28 A 484 LEU ASP ARG ALA GLU LEU ILE GLU GLY TYR LYS GLU LEU SEQRES 29 A 484 MET ARG MET LYS GLY GLN ASP ALA SER MET LEU ASP ALA SEQRES 30 A 484 SER ALA VAL GLU HIS GLU VAL ASP GLN VAL LEU ASP ALA SEQRES 31 A 484 VAL ASP PHE ASP LYS ASN GLY TYR ILE GLU TYR SER GLU SEQRES 32 A 484 PHE VAL THR VAL ALA MET ASP ARG LYS THR LEU LEU SER SEQRES 33 A 484 ARG GLU ARG LEU GLU ARG ALA PHE ARG MET PHE ASP SER SEQRES 34 A 484 ASP ASN SER GLY LYS ILE SER SER THR GLU LEU ALA THR SEQRES 35 A 484 ILE PHE GLY VAL SER ASP VAL ASP SER GLU THR TRP LYS SEQRES 36 A 484 SER VAL LEU SER GLU VAL ASP LYS ASN ASN ASP GLY GLU SEQRES 37 A 484 VAL ASP PHE ASP GLU PHE GLN GLN MET LEU LEU LYS LEU SEQRES 38 A 484 CYS GLY ASN HET 9XJ A 601 25 HET CA A 602 1 HETNAM 9XJ 3-(3-CHLOROPHENOXY)-1-[(PIPERIDIN-4-YL)METHYL]-1H- HETNAM 2 9XJ PYRAZOLO[3,4-D]PYRIMIDIN-4-AMINE HETNAM CA CALCIUM ION FORMUL 2 9XJ C17 H19 CL N6 O FORMUL 3 CA CA 2+ FORMUL 4 HOH *244(H2 O) HELIX 1 AA1 ILE A 46 ARG A 50 1 5 HELIX 2 AA2 ASP A 92 LEU A 106 1 15 HELIX 3 AA3 GLU A 135 ARG A 143 1 9 HELIX 4 AA4 SER A 147 ASN A 168 1 22 HELIX 5 AA5 LYS A 176 GLU A 178 5 3 HELIX 6 AA6 LYS A 207 ILE A 212 1 6 HELIX 7 AA7 GLY A 213 ILE A 218 1 6 HELIX 8 AA8 ALA A 219 GLY A 225 1 7 HELIX 9 AA9 LYS A 230 GLY A 246 1 17 HELIX 10 AB1 ASN A 254 GLY A 265 1 12 HELIX 11 AB2 LEU A 271 LYS A 275 5 5 HELIX 12 AB3 SER A 278 LEU A 289 1 12 HELIX 13 AB4 VAL A 292 ARG A 296 5 5 HELIX 14 AB5 SER A 298 ASP A 304 1 7 HELIX 15 AB6 HIS A 305 THR A 312 1 8 HELIX 16 AB7 LEU A 323 ASP A 368 1 46 HELIX 17 AB8 ASP A 376 GLY A 392 1 17 HELIX 18 AB9 ASP A 399 VAL A 414 1 16 HELIX 19 AC1 GLU A 423 ASP A 451 1 29 HELIX 20 AC2 SER A 460 SER A 470 1 11 HELIX 21 AC3 ASP A 473 ASP A 485 1 13 HELIX 22 AC4 PHE A 494 LEU A 504 1 11 SHEET 1 AA1 5 TYR A 51 GLY A 60 0 SHEET 2 AA1 5 GLY A 63 ASP A 70 -1 O LEU A 67 N GLN A 54 SHEET 3 AA1 5 GLU A 76 SER A 83 -1 O CYS A 77 N CYS A 68 SHEET 4 AA1 5 TYR A 123 GLY A 128 -1 O GLY A 128 N ALA A 78 SHEET 5 AA1 5 LEU A 114 GLU A 119 -1 N TYR A 115 O VAL A 127 SHEET 1 AA2 2 LEU A 180 LEU A 182 0 SHEET 2 AA2 2 ILE A 191 ILE A 193 -1 O ARG A 192 N LEU A 181 SHEET 1 AA3 2 LYS A 457 SER A 459 0 SHEET 2 AA3 2 GLU A 491 ASP A 493 -1 O VAL A 492 N ILE A 458 LINK OD1 ASP A 451 CA CA A 602 1555 1555 2.11 LINK OD1BASP A 453 CA CA A 602 1555 1555 2.65 LINK OG SER A 455 CA CA A 602 1555 1555 2.29 LINK O LYS A 457 CA CA A 602 1555 1555 2.43 LINK CA CA A 602 O HOH A 756 1555 1555 3.06 LINK CA CA A 602 O AHOH A 894 1555 1555 2.55 SITE 1 AC1 16 LEU A 57 VAL A 65 ALA A 78 LYS A 80 SITE 2 AC1 16 MET A 112 LEU A 126 GLU A 129 TYR A 131 SITE 3 AC1 16 GLU A 135 GLU A 178 LEU A 181 ILE A 194 SITE 4 AC1 16 ASP A 195 HOH A 772 HOH A 824 HOH A 827 SITE 1 AC2 6 ASP A 451 ASP A 453 SER A 455 LYS A 457 SITE 2 AC2 6 HOH A 756 HOH A 894 CRYST1 47.969 72.815 65.528 90.00 99.53 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020847 0.000000 0.003500 0.00000 SCALE2 0.000000 0.013733 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015474 0.00000