HEADER HYDROLASE 21-JUN-17 5W83 TITLE RPN8/RPN11 DIMER COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT RPN8; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE RPN11; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: 26S PROTEASOME REGULATORY SUBUNIT RPN11,PROTEIN MPR1; COMPND 9 EC: 3.4.19.12; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: RPN8, YOR261C, O5360; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 12 S288C); SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: RPN11, MPR1, YFR004W; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.C.DONG,E.J.WORDEN,A.MARTIN REVDAT 5 04-OCT-23 5W83 1 REMARK REVDAT 4 23-MAR-22 5W83 1 REMARK REVDAT 3 27-SEP-17 5W83 1 REMARK REVDAT 2 20-SEP-17 5W83 1 JRNL REVDAT 1 06-SEP-17 5W83 0 JRNL AUTH E.J.WORDEN,K.C.DONG,A.MARTIN JRNL TITL AN AAA MOTOR-DRIVEN MECHANICAL SWITCH IN RPN11 CONTROLS JRNL TITL 2 DEUBIQUITINATION AT THE 26S PROTEASOME. JRNL REF MOL. CELL V. 67 799 2017 JRNL REFN ISSN 1097-4164 JRNL PMID 28844860 JRNL DOI 10.1016/J.MOLCEL.2017.07.023 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 52719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.5177 - 3.7462 1.00 3858 151 0.1911 0.2356 REMARK 3 2 3.7462 - 2.9735 1.00 3719 146 0.1976 0.2018 REMARK 3 3 2.9735 - 2.5976 1.00 3682 144 0.2097 0.2516 REMARK 3 4 2.5976 - 2.3601 1.00 3665 143 0.2087 0.1957 REMARK 3 5 2.3601 - 2.1910 1.00 3649 144 0.1970 0.2198 REMARK 3 6 2.1910 - 2.0618 1.00 3622 142 0.2102 0.2048 REMARK 3 7 2.0618 - 1.9585 1.00 3630 143 0.2139 0.2417 REMARK 3 8 1.9585 - 1.8733 1.00 3607 141 0.2290 0.2195 REMARK 3 9 1.8733 - 1.8011 1.00 3616 141 0.2592 0.2878 REMARK 3 10 1.8011 - 1.7390 1.00 3614 142 0.2848 0.3039 REMARK 3 11 1.7390 - 1.6846 1.00 3600 141 0.3105 0.3242 REMARK 3 12 1.6846 - 1.6365 1.00 3584 141 0.3310 0.3331 REMARK 3 13 1.6365 - 1.5934 1.00 3581 141 0.3533 0.3813 REMARK 3 14 1.5934 - 1.5545 0.92 3302 130 0.3852 0.4120 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2718 REMARK 3 ANGLE : 0.980 3687 REMARK 3 CHIRALITY : 0.066 420 REMARK 3 PLANARITY : 0.006 473 REMARK 3 DIHEDRAL : 23.217 1000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 11.1005 18.6694 19.6081 REMARK 3 T TENSOR REMARK 3 T11: 0.1504 T22: 0.1915 REMARK 3 T33: 0.1990 T12: 0.0007 REMARK 3 T13: -0.0029 T23: 0.0590 REMARK 3 L TENSOR REMARK 3 L11: 1.6671 L22: 2.6119 REMARK 3 L33: 3.1439 L12: -1.1175 REMARK 3 L13: -1.2655 L23: 1.6948 REMARK 3 S TENSOR REMARK 3 S11: -0.1141 S12: -0.1870 S13: -0.0199 REMARK 3 S21: 0.1912 S22: 0.0799 S23: 0.0261 REMARK 3 S31: 0.1121 S32: 0.0877 S33: 0.0269 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5W83 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228463. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52965 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 55.482 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4O8X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 14.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM TARTRATE PH 6.8, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.36000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.23500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.49500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.23500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.36000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.49500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 144 REMARK 465 ASP A 145 REMARK 465 VAL A 178 REMARK 465 ARG A 179 REMARK 465 ASP A 180 REMARK 465 GLN A 181 REMARK 465 ALA A 182 REMARK 465 ALA A 183 REMARK 465 GLY A 184 REMARK 465 GLY A 185 REMARK 465 LEU A 186 REMARK 465 SER A 187 REMARK 465 ILE A 188 REMARK 465 ARG A 189 REMARK 465 LEU A 190 REMARK 465 THR A 191 REMARK 465 ASN A 192 REMARK 465 GLN A 193 REMARK 465 LEU A 194 REMARK 465 LYS A 195 REMARK 465 SER A 196 REMARK 465 LEU A 197 REMARK 465 LYS A 198 REMARK 465 GLY A 199 REMARK 465 LEU A 200 REMARK 465 GLN A 201 REMARK 465 SER A 202 REMARK 465 LYS A 203 REMARK 465 LEU A 204 REMARK 465 LYS A 205 REMARK 465 ASP A 206 REMARK 465 VAL A 207 REMARK 465 VAL A 208 REMARK 465 GLU A 209 REMARK 465 TYR A 210 REMARK 465 LEU A 211 REMARK 465 ASP A 212 REMARK 465 LYS A 213 REMARK 465 VAL A 214 REMARK 465 ILE A 215 REMARK 465 ASN A 216 REMARK 465 LYS A 217 REMARK 465 GLU A 218 REMARK 465 LEU A 219 REMARK 465 PRO A 220 REMARK 465 ILE A 221 REMARK 465 ASN A 222 REMARK 465 HIS A 223 REMARK 465 THR A 224 REMARK 465 ILE A 225 REMARK 465 LEU A 226 REMARK 465 GLY A 227 REMARK 465 LYS A 228 REMARK 465 LEU A 229 REMARK 465 GLN A 230 REMARK 465 ASP A 231 REMARK 465 VAL A 232 REMARK 465 PHE A 233 REMARK 465 ASN A 234 REMARK 465 LEU A 235 REMARK 465 LEU A 236 REMARK 465 PRO A 237 REMARK 465 ASN A 238 REMARK 465 LEU A 239 REMARK 465 GLY A 240 REMARK 465 THR A 241 REMARK 465 PRO A 242 REMARK 465 ASP A 243 REMARK 465 ASP A 244 REMARK 465 ASP A 245 REMARK 465 GLU A 246 REMARK 465 ILE A 247 REMARK 465 ASP A 248 REMARK 465 VAL A 249 REMARK 465 GLU A 250 REMARK 465 ASN A 251 REMARK 465 HIS A 252 REMARK 465 ASP A 253 REMARK 465 ARG A 254 REMARK 465 ILE A 255 REMARK 465 ASN A 256 REMARK 465 ILE A 257 REMARK 465 SER A 258 REMARK 465 ASN A 259 REMARK 465 ASN A 260 REMARK 465 LEU A 261 REMARK 465 GLN A 262 REMARK 465 LYS A 263 REMARK 465 ALA A 264 REMARK 465 LEU A 265 REMARK 465 THR A 266 REMARK 465 VAL A 267 REMARK 465 LYS A 268 REMARK 465 THR A 269 REMARK 465 ASN A 270 REMARK 465 ASP A 271 REMARK 465 GLU A 272 REMARK 465 LEU A 273 REMARK 465 MET A 274 REMARK 465 VAL A 275 REMARK 465 ILE A 276 REMARK 465 TYR A 277 REMARK 465 ILE A 278 REMARK 465 SER A 279 REMARK 465 ASN A 280 REMARK 465 LEU A 281 REMARK 465 VAL A 282 REMARK 465 ARG A 283 REMARK 465 SER A 284 REMARK 465 ILE A 285 REMARK 465 ILE A 286 REMARK 465 ALA A 287 REMARK 465 PHE A 288 REMARK 465 ASP A 289 REMARK 465 ASP A 290 REMARK 465 LEU A 291 REMARK 465 ILE A 292 REMARK 465 GLU A 293 REMARK 465 ASN A 294 REMARK 465 LYS A 295 REMARK 465 ILE A 296 REMARK 465 GLN A 297 REMARK 465 ASN A 298 REMARK 465 LYS A 299 REMARK 465 LYS A 300 REMARK 465 ILE A 301 REMARK 465 GLN A 302 REMARK 465 GLU A 303 REMARK 465 GLN A 304 REMARK 465 ARG A 305 REMARK 465 VAL A 306 REMARK 465 LYS A 307 REMARK 465 ASP A 308 REMARK 465 LYS A 309 REMARK 465 GLN A 310 REMARK 465 SER A 311 REMARK 465 LYS A 312 REMARK 465 VAL A 313 REMARK 465 SER A 314 REMARK 465 ASP A 315 REMARK 465 ASP A 316 REMARK 465 SER A 317 REMARK 465 GLU A 318 REMARK 465 SER A 319 REMARK 465 GLU A 320 REMARK 465 SER A 321 REMARK 465 GLY A 322 REMARK 465 ASP A 323 REMARK 465 LYS A 324 REMARK 465 GLU A 325 REMARK 465 ALA A 326 REMARK 465 THR A 327 REMARK 465 ALA A 328 REMARK 465 PRO A 329 REMARK 465 LEU A 330 REMARK 465 ILE A 331 REMARK 465 GLN A 332 REMARK 465 ARG A 333 REMARK 465 LYS A 334 REMARK 465 ASN A 335 REMARK 465 LYS A 336 REMARK 465 LYS A 337 REMARK 465 ASN A 338 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ARG B 3 REMARK 465 LEU B 4 REMARK 465 GLN B 5 REMARK 465 ARG B 6 REMARK 465 LEU B 7 REMARK 465 MET B 8 REMARK 465 MET B 9 REMARK 465 ASN B 10 REMARK 465 SER B 11 REMARK 465 LYS B 12 REMARK 465 VAL B 13 REMARK 465 GLY B 14 REMARK 465 SER B 15 REMARK 465 ALA B 16 REMARK 465 ASP B 17 REMARK 465 THR B 18 REMARK 465 GLY B 19 REMARK 465 ARG B 20 REMARK 465 ASP B 21 REMARK 465 ASP B 22 REMARK 465 THR B 23 REMARK 465 GLY B 75 REMARK 465 THR B 76 REMARK 465 GLY B 77 REMARK 465 VAL B 78 REMARK 465 SER B 79 REMARK 465 VAL B 80 REMARK 465 GLU B 81 REMARK 465 THR B 161 REMARK 465 GLY B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 ILE B 165 REMARK 465 ASN B 166 REMARK 465 ASN B 167 REMARK 465 LEU B 168 REMARK 465 GLU B 169 REMARK 465 PRO B 170 REMARK 465 ARG B 171 REMARK 465 GLN B 172 REMARK 465 THR B 173 REMARK 465 THR B 174 REMARK 465 SER B 175 REMARK 465 ASN B 176 REMARK 465 THR B 177 REMARK 465 GLY B 178 REMARK 465 LEU B 179 REMARK 465 LEU B 180 REMARK 465 ASN B 181 REMARK 465 LYS B 182 REMARK 465 ALA B 183 REMARK 465 ASN B 184 REMARK 465 ILE B 185 REMARK 465 GLN B 186 REMARK 465 ALA B 187 REMARK 465 LEU B 188 REMARK 465 ILE B 189 REMARK 465 HIS B 190 REMARK 465 GLY B 191 REMARK 465 LEU B 192 REMARK 465 ASN B 193 REMARK 465 ARG B 194 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 59 CG OD1 OD2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 ASN A 62 CG OD1 ND2 REMARK 470 SER A 63 OG REMARK 470 ASP A 64 CG OD1 OD2 REMARK 470 VAL A 65 CG1 CG2 REMARK 470 LYS A 88 CE NZ REMARK 470 GLN A 127 CG CD OE1 NE2 REMARK 470 GLN A 128 CG CD OE1 NE2 REMARK 470 LYS B 150 CE NZ REMARK 470 HIS B 204 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 218 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR B 196 O HOH B 401 1.59 REMARK 500 O HOH B 415 O HOH B 427 1.81 REMARK 500 OH TYR B 196 O HOH B 401 1.83 REMARK 500 O HOH A 405 O HOH A 472 1.93 REMARK 500 O HOH B 434 O HOH B 473 1.94 REMARK 500 O HOH B 487 O HOH B 509 1.94 REMARK 500 O HOH A 457 O HOH A 483 1.99 REMARK 500 O HIS B 204 O HOH B 402 2.13 REMARK 500 O HOH B 441 O HOH B 497 2.14 REMARK 500 NZ LYS A 31 O HOH A 401 2.14 REMARK 500 NE2 GLN A 4 O HOH A 402 2.15 REMARK 500 O HOH A 480 O HOH A 495 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O VAL B 58 O HOH A 405 3545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 126 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 29 -134.35 57.73 REMARK 500 PRO A 133 43.05 -84.95 REMARK 500 ASP B 59 -168.96 -160.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 511 DISTANCE = 6.13 ANGSTROMS REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 ZN B 301 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 48 OE2 REMARK 620 2 HIS B 109 NE2 105.5 REMARK 620 3 HIS B 111 NE2 98.6 84.6 REMARK 620 4 ASP B 122 OD1 119.4 90.0 141.6 REMARK 620 5 ASP B 122 OD2 165.1 88.0 88.8 53.0 REMARK 620 6 HOH B 473 O 75.4 179.0 95.7 89.2 91.0 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5U4P RELATED DB: PDB DBREF 5W83 A 1 338 UNP Q08723 RPN8_YEAST 1 338 DBREF 5W83 B 1 222 UNP P43588 RPN11_YEAST 1 222 SEQRES 1 A 338 MET SER LEU GLN HIS GLU LYS VAL THR ILE ALA PRO LEU SEQRES 2 A 338 VAL LEU LEU SER ALA LEU ASP HIS TYR GLU ARG THR GLN SEQRES 3 A 338 THR LYS GLU ASN LYS ARG CYS VAL GLY VAL ILE LEU GLY SEQRES 4 A 338 ASP ALA ASN SER SER THR ILE ARG VAL THR ASN SER PHE SEQRES 5 A 338 ALA LEU PRO PHE GLU GLU ASP GLU LYS ASN SER ASP VAL SEQRES 6 A 338 TRP PHE LEU ASP HIS ASN TYR ILE GLU ASN MET ASN GLU SEQRES 7 A 338 MET CYS LYS LYS ILE ASN ALA LYS GLU LYS LEU ILE GLY SEQRES 8 A 338 TRP TYR HIS SER GLY PRO LYS LEU ARG ALA SER ASP LEU SEQRES 9 A 338 LYS ILE ASN GLU LEU PHE LYS LYS TYR THR GLN ASN ASN SEQRES 10 A 338 PRO LEU LEU LEU ILE VAL ASP VAL LYS GLN GLN GLY VAL SEQRES 11 A 338 GLY LEU PRO THR ASP ALA TYR VAL ALA ILE GLU GLN VAL SEQRES 12 A 338 LYS ASP ASP GLY THR SER THR GLU LYS THR PHE LEU HIS SEQRES 13 A 338 LEU PRO CYS THR ILE GLU ALA GLU GLU ALA GLU GLU ILE SEQRES 14 A 338 GLY VAL GLU HIS LEU LEU ARG ASP VAL ARG ASP GLN ALA SEQRES 15 A 338 ALA GLY GLY LEU SER ILE ARG LEU THR ASN GLN LEU LYS SEQRES 16 A 338 SER LEU LYS GLY LEU GLN SER LYS LEU LYS ASP VAL VAL SEQRES 17 A 338 GLU TYR LEU ASP LYS VAL ILE ASN LYS GLU LEU PRO ILE SEQRES 18 A 338 ASN HIS THR ILE LEU GLY LYS LEU GLN ASP VAL PHE ASN SEQRES 19 A 338 LEU LEU PRO ASN LEU GLY THR PRO ASP ASP ASP GLU ILE SEQRES 20 A 338 ASP VAL GLU ASN HIS ASP ARG ILE ASN ILE SER ASN ASN SEQRES 21 A 338 LEU GLN LYS ALA LEU THR VAL LYS THR ASN ASP GLU LEU SEQRES 22 A 338 MET VAL ILE TYR ILE SER ASN LEU VAL ARG SER ILE ILE SEQRES 23 A 338 ALA PHE ASP ASP LEU ILE GLU ASN LYS ILE GLN ASN LYS SEQRES 24 A 338 LYS ILE GLN GLU GLN ARG VAL LYS ASP LYS GLN SER LYS SEQRES 25 A 338 VAL SER ASP ASP SER GLU SER GLU SER GLY ASP LYS GLU SEQRES 26 A 338 ALA THR ALA PRO LEU ILE GLN ARG LYS ASN LYS LYS ASN SEQRES 1 B 222 MET GLU ARG LEU GLN ARG LEU MET MET ASN SER LYS VAL SEQRES 2 B 222 GLY SER ALA ASP THR GLY ARG ASP ASP THR LYS GLU THR SEQRES 3 B 222 VAL TYR ILE SER SER ILE ALA LEU LEU LYS MET LEU LYS SEQRES 4 B 222 HIS GLY ARG ALA GLY VAL PRO MET GLU VAL MET GLY LEU SEQRES 5 B 222 MET LEU GLY GLU PHE VAL ASP ASP TYR THR VAL ASN VAL SEQRES 6 B 222 VAL ASP VAL PHE ALA MET PRO GLN SER GLY THR GLY VAL SEQRES 7 B 222 SER VAL GLU ALA VAL ASP ASP VAL PHE GLN ALA LYS MET SEQRES 8 B 222 MET ASP MET LEU LYS GLN THR GLY ARG ASP GLN MET VAL SEQRES 9 B 222 VAL GLY TRP TYR HIS SER HIS PRO GLY PHE GLY CYS TRP SEQRES 10 B 222 LEU SER SER VAL ASP VAL ASN THR GLN LYS SER PHE GLU SEQRES 11 B 222 GLN LEU ASN SER ARG ALA VAL ALA VAL VAL VAL ASP PRO SEQRES 12 B 222 ILE GLN SER VAL LYS GLY LYS VAL VAL ILE ASP ALA PHE SEQRES 13 B 222 ARG LEU ILE ASP THR GLY ALA LEU ILE ASN ASN LEU GLU SEQRES 14 B 222 PRO ARG GLN THR THR SER ASN THR GLY LEU LEU ASN LYS SEQRES 15 B 222 ALA ASN ILE GLN ALA LEU ILE HIS GLY LEU ASN ARG HIS SEQRES 16 B 222 TYR TYR SER LEU ASN ILE ASP TYR HIS LYS THR ALA LYS SEQRES 17 B 222 GLU THR LYS MET LEU MET ASN LEU HIS LYS GLU GLN TRP SEQRES 18 B 222 GLN HET ZN B 301 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *207(H2 O) HELIX 1 AA1 ALA A 11 THR A 25 1 15 HELIX 2 AA2 ASP A 69 ASN A 84 1 16 HELIX 3 AA3 SER A 102 LYS A 111 1 10 HELIX 4 AA4 GLU A 164 ARG A 176 1 13 HELIX 5 AA5 SER B 31 VAL B 45 1 15 HELIX 6 AA6 ASP B 84 THR B 98 1 15 HELIX 7 AA7 SER B 119 ASN B 133 1 15 HELIX 8 AA8 ILE B 144 GLY B 149 5 6 HELIX 9 AA9 THR B 206 GLN B 222 1 17 SHEET 1 AA1 8 GLU A 151 LEU A 157 0 SHEET 2 AA1 8 THR A 134 GLN A 142 -1 N GLN A 142 O GLU A 151 SHEET 3 AA1 8 LEU A 119 VAL A 123 -1 N ILE A 122 O ASP A 135 SHEET 4 AA1 8 LYS A 88 HIS A 94 1 N HIS A 94 O VAL A 123 SHEET 5 AA1 8 VAL A 34 ASP A 40 -1 N GLY A 35 O TYR A 93 SHEET 6 AA1 8 THR A 45 ALA A 53 -1 O PHE A 52 N VAL A 36 SHEET 7 AA1 8 LYS A 7 ILE A 10 1 N THR A 9 O ILE A 46 SHEET 8 AA1 8 CYS A 159 ILE A 161 1 O THR A 160 N ILE A 10 SHEET 1 AA2 2 PHE A 56 GLU A 58 0 SHEET 2 AA2 2 TRP A 66 LEU A 68 -1 O PHE A 67 N GLU A 57 SHEET 1 AA3 8 THR B 26 SER B 30 0 SHEET 2 AA3 8 THR B 62 ALA B 70 1 O VAL B 65 N TYR B 28 SHEET 3 AA3 8 MET B 50 ASP B 59 -1 N GLU B 56 O ASN B 64 SHEET 4 AA3 8 MET B 103 SER B 110 -1 O MET B 103 N GLY B 55 SHEET 5 AA3 8 VAL B 137 ASP B 142 1 O VAL B 139 N TRP B 107 SHEET 6 AA3 8 VAL B 152 LEU B 158 -1 O VAL B 152 N ASP B 142 SHEET 7 AA3 8 TYR B 196 HIS B 204 -1 O LEU B 199 N ALA B 155 SHEET 8 AA3 8 THR B 26 SER B 30 1 N VAL B 27 O ASN B 200 LINK OE2 GLU B 48 ZN ZN B 301 1555 1555 2.51 LINK NE2 HIS B 109 ZN ZN B 301 1555 1555 2.11 LINK NE2 HIS B 111 ZN ZN B 301 1555 1555 2.57 LINK OD1 ASP B 122 ZN ZN B 301 1555 1555 2.41 LINK OD2 ASP B 122 ZN ZN B 301 1555 1555 2.53 LINK ZN ZN B 301 O HOH B 473 1555 1555 2.31 CISPEP 1 GLY A 96 PRO A 97 0 8.54 CISPEP 2 VAL B 45 PRO B 46 0 9.97 CRYST1 58.720 74.990 82.470 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017030 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013335 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012126 0.00000