HEADER TRANSFERASE/TRANSFERASE INHIBITOR 22-JUN-17 5W8R TITLE TOXOPLASMA GONDII CDPK1 IN COMPLEX WITH INHIBITOR 3CIB-PPI COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-DOMAIN PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: CDPK1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15-MHL KEYWDS CDPK, PARASITOLOGY, ATP-BINDING, KINASE, NUCLEOTIDE-BINDING, KEYWDS 2 SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE, STRUCTURAL GENOMICS, KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSFERASE-TRANSFERASE KEYWDS 4 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.EL BAKKOURI,D.LOVATO,P.LOPPNAU,Y.H.LIN,F.RUTAGANARIA,M.S.LOPEZ, AUTHOR 2 L.SHOKAT,C.BOUNTRA,A.M.EDWARDS,C.H.ARROWSMITH,D.SIBLEY,R.HUI, AUTHOR 3 J.R.WALKER,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 04-OCT-23 5W8R 1 REMARK REVDAT 2 15-NOV-17 5W8R 1 SOURCE REVDAT 1 19-JUL-17 5W8R 0 JRNL AUTH M.EL BAKKOURI,D.LOVATO,P.LOPPNAU,Y.H.LIN,F.RUTAGANARIA, JRNL AUTH 2 M.S.LOPEZ,L.SHOKAT,C.BOUNTRA,A.M.EDWARDS,C.H.ARROWSMITH, JRNL AUTH 3 D.SIBLEY,R.HUI,J.R.WALKER, JRNL AUTH 4 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL TOXOPLASMA GONDII CDPK1 IN COMPLEX WITH INHIBITOR 3CIB-PPI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 22522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1096 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.31 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.52 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2759 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2000 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2635 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.49 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 124 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3542 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.76870 REMARK 3 B22 (A**2) : 3.32830 REMARK 3 B33 (A**2) : -11.09710 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.88460 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.280 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.306 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.220 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7122 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 12832 ; 2.900 ; HARMONIC REMARK 3 TORSION ANGLES : 1592 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 98 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1092 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7122 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 484 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7694 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.73 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.91 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.02 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|44 - 136 } REMARK 3 ORIGIN FOR THE GROUP (A): -14.8568 -17.4787 102.0444 REMARK 3 T TENSOR REMARK 3 T11: -0.1108 T22: -0.1340 REMARK 3 T33: -0.0240 T12: -0.0087 REMARK 3 T13: -0.0211 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.2972 L22: 2.7309 REMARK 3 L33: 2.7297 L12: -0.6287 REMARK 3 L13: 0.5998 L23: -0.8032 REMARK 3 S TENSOR REMARK 3 S11: -0.0622 S12: -0.1599 S13: -0.0085 REMARK 3 S21: 0.3353 S22: -0.0380 S23: -0.1333 REMARK 3 S31: -0.1259 S32: 0.0313 S33: 0.1002 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|137 - 214 } REMARK 3 ORIGIN FOR THE GROUP (A): -13.2388 -16.1248 84.6245 REMARK 3 T TENSOR REMARK 3 T11: -0.1387 T22: -0.0551 REMARK 3 T33: 0.0134 T12: 0.0424 REMARK 3 T13: 0.0119 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.4573 L22: 1.5350 REMARK 3 L33: 2.3920 L12: 0.2986 REMARK 3 L13: 0.6516 L23: -0.5620 REMARK 3 S TENSOR REMARK 3 S11: 0.0635 S12: 0.3219 S13: -0.0948 REMARK 3 S21: -0.1232 S22: -0.1095 S23: -0.1223 REMARK 3 S31: 0.3276 S32: 0.3251 S33: 0.0459 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|215 - 383 } REMARK 3 ORIGIN FOR THE GROUP (A): -10.7984 -6.8732 82.8555 REMARK 3 T TENSOR REMARK 3 T11: -0.2041 T22: -0.1021 REMARK 3 T33: -0.1477 T12: 0.0413 REMARK 3 T13: 0.0280 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.1858 L22: 1.6632 REMARK 3 L33: 1.2528 L12: 0.0842 REMARK 3 L13: 0.7431 L23: 0.3895 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: 0.3057 S13: -0.0125 REMARK 3 S21: -0.0332 S22: -0.0389 S23: -0.0508 REMARK 3 S31: 0.1714 S32: 0.1914 S33: 0.0283 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|384 - 438 } REMARK 3 ORIGIN FOR THE GROUP (A): 3.3539 -5.4195 113.1665 REMARK 3 T TENSOR REMARK 3 T11: 0.0628 T22: -0.1149 REMARK 3 T33: 0.0110 T12: 0.0253 REMARK 3 T13: -0.1987 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 3.5568 L22: 3.9200 REMARK 3 L33: 2.7876 L12: 0.9875 REMARK 3 L13: -0.8040 L23: -1.3402 REMARK 3 S TENSOR REMARK 3 S11: 0.0762 S12: 0.0017 S13: -0.0971 REMARK 3 S21: 0.0734 S22: -0.0299 S23: -0.1225 REMARK 3 S31: 0.1277 S32: 0.0728 S33: -0.0463 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|439 - 507 } REMARK 3 ORIGIN FOR THE GROUP (A): 5.9479 5.5971 85.7957 REMARK 3 T TENSOR REMARK 3 T11: -0.1760 T22: -0.1228 REMARK 3 T33: 0.0352 T12: 0.0331 REMARK 3 T13: -0.0120 T23: 0.0638 REMARK 3 L TENSOR REMARK 3 L11: 6.6399 L22: 1.3289 REMARK 3 L33: 4.4514 L12: -0.7957 REMARK 3 L13: -2.3089 L23: 1.6900 REMARK 3 S TENSOR REMARK 3 S11: 0.1599 S12: 0.1340 S13: 0.5168 REMARK 3 S21: 0.0302 S22: 0.1283 S23: -0.1531 REMARK 3 S31: -0.2090 S32: -0.1346 S33: -0.2882 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5W8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228621. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22522 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 48.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.43500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IFG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG8K, 0.2M NACL, 0.1M HEPES REMARK 280 PH7.5, 10 % GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.47200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 24 REMARK 465 PRO A 25 REMARK 465 GLY A 26 REMARK 465 SER A 27 REMARK 465 MET A 28 REMARK 465 MET A 29 REMARK 465 ASP A 30 REMARK 465 HIS A 31 REMARK 465 LEU A 32 REMARK 465 HIS A 33 REMARK 465 ALA A 34 REMARK 465 THR A 35 REMARK 465 PRO A 36 REMARK 465 GLY A 37 REMARK 465 MET A 38 REMARK 465 PHE A 39 REMARK 465 VAL A 40 REMARK 465 GLN A 41 REMARK 465 HIS A 42 REMARK 465 SER A 43 REMARK 465 ILE A 316 REMARK 465 SER A 317 REMARK 465 ASP A 415 REMARK 465 PHE A 416 REMARK 465 ASP A 417 REMARK 465 LYS A 418 REMARK 465 ASN A 419 REMARK 465 GLY A 420 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 44 OG1 CG2 REMARK 470 LYS A 88 NZ REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 ASP A 188 CG OD1 OD2 REMARK 470 LYS A 264 CE NZ REMARK 470 LYS A 266 CG CD CE NZ REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 LYS A 313 CG CD CE NZ REMARK 470 GLN A 315 CG CD OE1 NE2 REMARK 470 VAL A 318 CG1 CG2 REMARK 470 VAL A 320 CG1 CG2 REMARK 470 LYS A 350 CE NZ REMARK 470 LYS A 366 CG CD CE NZ REMARK 470 LYS A 369 CG CD CE NZ REMARK 470 GLU A 382 CG CD OE1 OE2 REMARK 470 GLU A 386 CG CD OE1 OE2 REMARK 470 MET A 390 CG SD CE REMARK 470 LYS A 391 CG CD CE NZ REMARK 470 GLN A 393 CG CD OE1 NE2 REMARK 470 LEU A 398 CG CD1 CD2 REMARK 470 SER A 401 OG REMARK 470 VAL A 414 CG1 CG2 REMARK 470 ILE A 422 CG1 CG2 CD1 REMARK 470 GLU A 426 CG CD OE1 OE2 REMARK 470 LYS A 435 CD CE NZ REMARK 470 GLU A 475 CD OE1 OE2 REMARK 470 LYS A 486 CG CD CE NZ REMARK 470 ASN A 487 CG OD1 ND2 REMARK 470 LYS A 503 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 62 -10.52 77.98 REMARK 500 ASP A 120 -169.60 -124.05 REMARK 500 ARG A 173 -37.77 83.78 REMARK 500 LEU A 289 34.39 -99.06 REMARK 500 MET A 397 75.77 -104.77 REMARK 500 ASN A 487 56.61 -97.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 451 OD1 REMARK 620 2 ASP A 453 OD1 81.6 REMARK 620 3 SER A 455 OG 95.4 108.8 REMARK 620 4 LYS A 457 O 97.3 177.6 73.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9XV A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 602 DBREF 5W8R A 30 507 UNP Q9BJF5 Q9BJF5_TOXGO 30 507 SEQADV 5W8R GLY A 24 UNP Q9BJF5 EXPRESSION TAG SEQADV 5W8R PRO A 25 UNP Q9BJF5 EXPRESSION TAG SEQADV 5W8R GLY A 26 UNP Q9BJF5 EXPRESSION TAG SEQADV 5W8R SER A 27 UNP Q9BJF5 EXPRESSION TAG SEQADV 5W8R MET A 28 UNP Q9BJF5 EXPRESSION TAG SEQADV 5W8R MET A 29 UNP Q9BJF5 EXPRESSION TAG SEQRES 1 A 484 GLY PRO GLY SER MET MET ASP HIS LEU HIS ALA THR PRO SEQRES 2 A 484 GLY MET PHE VAL GLN HIS SER THR ALA ILE PHE SER ASP SEQRES 3 A 484 ARG TYR LYS GLY GLN ARG VAL LEU GLY LYS GLY SER PHE SEQRES 4 A 484 GLY GLU VAL ILE LEU CYS LYS ASP LYS ILE THR GLY GLN SEQRES 5 A 484 GLU CYS ALA VAL LYS VAL ILE SER LYS ARG GLN VAL LYS SEQRES 6 A 484 GLN LYS THR ASP LYS GLU SER LEU LEU ARG GLU VAL GLN SEQRES 7 A 484 LEU LEU LYS GLN LEU ASP HIS PRO ASN ILE MET LYS LEU SEQRES 8 A 484 TYR GLU PHE PHE GLU ASP LYS GLY TYR PHE TYR LEU VAL SEQRES 9 A 484 GLY GLU VAL TYR THR GLY GLY GLU LEU PHE ASP GLU ILE SEQRES 10 A 484 ILE SER ARG LYS ARG PHE SER GLU VAL ASP ALA ALA ARG SEQRES 11 A 484 ILE ILE ARG GLN VAL LEU SER GLY ILE THR TYR MET HIS SEQRES 12 A 484 LYS ASN LYS ILE VAL HIS ARG ASP LEU LYS PRO GLU ASN SEQRES 13 A 484 LEU LEU LEU GLU SER LYS SER LYS ASP ALA ASN ILE ARG SEQRES 14 A 484 ILE ILE ASP PHE GLY LEU SER THR HIS PHE GLU ALA SER SEQRES 15 A 484 LYS LYS MET LYS ASP LYS ILE GLY THR ALA TYR TYR ILE SEQRES 16 A 484 ALA PRO GLU VAL LEU HIS GLY THR TYR ASP GLU LYS CYS SEQRES 17 A 484 ASP VAL TRP SER THR GLY VAL ILE LEU TYR ILE LEU LEU SEQRES 18 A 484 SER GLY CYS PRO PRO PHE ASN GLY ALA ASN GLU TYR ASP SEQRES 19 A 484 ILE LEU LYS LYS VAL GLU LYS GLY LYS TYR THR PHE GLU SEQRES 20 A 484 LEU PRO GLN TRP LYS LYS VAL SER GLU SER ALA LYS ASP SEQRES 21 A 484 LEU ILE ARG LYS MET LEU THR TYR VAL PRO SER MET ARG SEQRES 22 A 484 ILE SER ALA ARG ASP ALA LEU ASP HIS GLU TRP ILE GLN SEQRES 23 A 484 THR TYR THR LYS GLU GLN ILE SER VAL ASP VAL PRO SER SEQRES 24 A 484 LEU ASP ASN ALA ILE LEU ASN ILE ARG GLN PHE GLN GLY SEQRES 25 A 484 THR GLN LYS LEU ALA GLN ALA ALA LEU LEU TYR MET GLY SEQRES 26 A 484 SER LYS LEU THR SER GLN ASP GLU THR LYS GLU LEU THR SEQRES 27 A 484 ALA ILE PHE HIS LYS MET ASP LYS ASN GLY ASP GLY GLN SEQRES 28 A 484 LEU ASP ARG ALA GLU LEU ILE GLU GLY TYR LYS GLU LEU SEQRES 29 A 484 MET ARG MET LYS GLY GLN ASP ALA SER MET LEU ASP ALA SEQRES 30 A 484 SER ALA VAL GLU HIS GLU VAL ASP GLN VAL LEU ASP ALA SEQRES 31 A 484 VAL ASP PHE ASP LYS ASN GLY TYR ILE GLU TYR SER GLU SEQRES 32 A 484 PHE VAL THR VAL ALA MET ASP ARG LYS THR LEU LEU SER SEQRES 33 A 484 ARG GLU ARG LEU GLU ARG ALA PHE ARG MET PHE ASP SER SEQRES 34 A 484 ASP ASN SER GLY LYS ILE SER SER THR GLU LEU ALA THR SEQRES 35 A 484 ILE PHE GLY VAL SER ASP VAL ASP SER GLU THR TRP LYS SEQRES 36 A 484 SER VAL LEU SER GLU VAL ASP LYS ASN ASN ASP GLY GLU SEQRES 37 A 484 VAL ASP PHE ASP GLU PHE GLN GLN MET LEU LEU LYS LEU SEQRES 38 A 484 CYS GLY ASN HET 9XV A 601 22 HET CA A 602 1 HETNAM 9XV 1-TERT-BUTYL-3-[(3-CHLOROPHENYL)METHYL]-1H-PYRAZOLO[3, HETNAM 2 9XV 4-D]PYRIMIDIN-4-AMINE HETNAM CA CALCIUM ION FORMUL 2 9XV C16 H18 CL N5 FORMUL 3 CA CA 2+ FORMUL 4 HOH *140(H2 O) HELIX 1 AA1 ILE A 46 ARG A 50 1 5 HELIX 2 AA2 ASP A 92 LEU A 106 1 15 HELIX 3 AA3 GLU A 135 ILE A 141 1 7 HELIX 4 AA4 SER A 147 ASN A 168 1 22 HELIX 5 AA5 LYS A 176 GLU A 178 5 3 HELIX 6 AA6 LYS A 207 ILE A 212 1 6 HELIX 7 AA7 ALA A 219 GLY A 225 1 7 HELIX 8 AA8 GLU A 229 GLY A 246 1 18 HELIX 9 AA9 ASN A 254 GLY A 265 1 12 HELIX 10 AB1 LEU A 271 VAL A 277 5 7 HELIX 11 AB2 SER A 278 LEU A 289 1 12 HELIX 12 AB3 SER A 298 ASP A 304 1 7 HELIX 13 AB4 HIS A 305 THR A 312 1 8 HELIX 14 AB5 LEU A 323 ASP A 368 1 46 HELIX 15 AB6 ASP A 376 GLY A 392 1 17 HELIX 16 AB7 ASP A 399 VAL A 414 1 16 HELIX 17 AB8 TYR A 424 ASP A 451 1 28 HELIX 18 AB9 SER A 460 SER A 470 1 11 HELIX 19 AC1 ASP A 473 ASP A 485 1 13 HELIX 20 AC2 PHE A 494 LEU A 504 1 11 SHEET 1 AA1 5 TYR A 51 GLY A 60 0 SHEET 2 AA1 5 GLY A 63 ASP A 70 -1 O LEU A 67 N ARG A 55 SHEET 3 AA1 5 GLU A 76 SER A 83 -1 O CYS A 77 N CYS A 68 SHEET 4 AA1 5 TYR A 123 GLY A 128 -1 O GLY A 128 N ALA A 78 SHEET 5 AA1 5 LEU A 114 GLU A 119 -1 N TYR A 115 O VAL A 127 SHEET 1 AA2 2 LEU A 180 LEU A 182 0 SHEET 2 AA2 2 ILE A 191 ILE A 193 -1 O ARG A 192 N LEU A 181 SHEET 1 AA3 2 GLN A 374 LEU A 375 0 SHEET 2 AA3 2 ILE A 422 GLU A 423 -1 O ILE A 422 N LEU A 375 SHEET 1 AA4 2 LYS A 457 SER A 459 0 SHEET 2 AA4 2 GLU A 491 ASP A 493 -1 O VAL A 492 N ILE A 458 LINK OD1 ASP A 451 CA CA A 602 1555 1555 2.13 LINK OD1 ASP A 453 CA CA A 602 1555 1555 2.50 LINK OG SER A 455 CA CA A 602 1555 1555 2.31 LINK O LYS A 457 CA CA A 602 1555 1555 2.65 SITE 1 AC1 14 LEU A 57 VAL A 65 ALA A 78 LYS A 80 SITE 2 AC1 14 MET A 112 LEU A 126 GLU A 129 VAL A 130 SITE 3 AC1 14 TYR A 131 LEU A 181 ILE A 194 ASP A 195 SITE 4 AC1 14 HOH A 773 HOH A 784 SITE 1 AC2 4 ASP A 451 ASP A 453 SER A 455 LYS A 457 CRYST1 48.024 72.944 65.546 90.00 99.30 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020823 0.000000 0.003410 0.00000 SCALE2 0.000000 0.013709 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015460 0.00000