HEADER HYDROLASE 22-JUN-17 5W8W TITLE BACILLUS CEREUS ZN-DEPENDENT METALLO-BETA-LACTAMASE AT PH 7 - NEW TITLE 2 REFINEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE TYPE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 36-257; COMPND 5 SYNONYM: B2 METALLO-BETA-LACTAMASE,BETA-LACTAMASE II, COMPND 6 CEPHALOSPORINASE,METALLO-BETA-LACTAMASE TYPE II,METALLOTHIOPROTEIN COMPND 7 BETA-LACTAMASE II,PENICILLINASE,ZINC-REQUIRING BETA-LACTAMASE II; COMPND 8 EC: 3.5.2.6; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 GENE: BLM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET27B KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.GONZALEZ,I.G.SHABALIN,J.E.RACZYNSKA,M.JASKOLSKI,W.MINOR, AUTHOR 2 A.WLODAWER,M.M.GONZALEZ,A.J.VILA REVDAT 4 04-OCT-23 5W8W 1 REMARK REVDAT 3 13-APR-22 5W8W 1 AUTHOR JRNL REVDAT 2 26-DEC-18 5W8W 1 JRNL REVDAT 1 12-JUL-17 5W8W 0 SPRSDE 12-JUL-17 5W8W 4NQ7 JRNL AUTH J.E.RACZYNSKA,I.G.SHABALIN,W.MINOR,A.WLODAWER,M.JASKOLSKI JRNL TITL A CLOSE LOOK ONTO STRUCTURAL MODELS AND PRIMARY LIGANDS OF JRNL TITL 2 METALLO-BETA-LACTAMASES. JRNL REF DRUG RESIST. UPDAT. V. 40 1 2018 JRNL REFN ESSN 1532-2084 JRNL PMID 30466711 JRNL DOI 10.1016/J.DRUP.2018.08.001 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.4 REMARK 3 NUMBER OF REFLECTIONS : 8356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 915 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 533 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1668 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61000 REMARK 3 B22 (A**2) : 3.36000 REMARK 3 B33 (A**2) : -2.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.450 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.246 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.864 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1706 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1624 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2312 ; 1.572 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3763 ; 0.949 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 216 ; 7.396 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;39.287 ;25.606 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 304 ;13.707 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;13.550 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 278 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1857 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 304 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2 ;22.646 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 48 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6240 10.1780 6.2770 REMARK 3 T TENSOR REMARK 3 T11: 0.2253 T22: 0.3187 REMARK 3 T33: 0.1673 T12: -0.1562 REMARK 3 T13: 0.0144 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 12.1373 L22: 11.1417 REMARK 3 L33: 9.8444 L12: -6.2254 REMARK 3 L13: -2.4815 L23: -1.6473 REMARK 3 S TENSOR REMARK 3 S11: -0.0033 S12: 0.3729 S13: 0.5339 REMARK 3 S21: -0.3637 S22: -0.1384 S23: -0.7648 REMARK 3 S31: -0.3994 S32: 0.2012 S33: 0.1418 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 49 A 81 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7180 1.9470 10.4820 REMARK 3 T TENSOR REMARK 3 T11: 0.0428 T22: 0.2378 REMARK 3 T33: 0.0855 T12: -0.0373 REMARK 3 T13: 0.0032 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 4.0891 L22: 3.9436 REMARK 3 L33: 6.5701 L12: 1.8414 REMARK 3 L13: 1.2024 L23: 0.8887 REMARK 3 S TENSOR REMARK 3 S11: 0.0523 S12: 0.0134 S13: -0.1108 REMARK 3 S21: 0.0279 S22: -0.1184 S23: -0.1480 REMARK 3 S31: -0.1908 S32: 0.5064 S33: 0.0660 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 82 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): 1.6540 1.7350 12.9800 REMARK 3 T TENSOR REMARK 3 T11: 0.0241 T22: 0.0567 REMARK 3 T33: 0.0591 T12: -0.0174 REMARK 3 T13: -0.0194 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 1.5071 L22: 1.0039 REMARK 3 L33: 6.0075 L12: -0.2981 REMARK 3 L13: 0.0007 L23: -0.5668 REMARK 3 S TENSOR REMARK 3 S11: -0.0223 S12: 0.0572 S13: 0.0385 REMARK 3 S21: -0.0108 S22: -0.0080 S23: 0.0451 REMARK 3 S31: -0.2406 S32: -0.0190 S33: 0.0304 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 245 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6490 -4.2920 25.5630 REMARK 3 T TENSOR REMARK 3 T11: 0.0200 T22: 0.1538 REMARK 3 T33: 0.0392 T12: 0.0480 REMARK 3 T13: -0.0119 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 2.2687 L22: 1.5658 REMARK 3 L33: 4.7062 L12: -0.4082 REMARK 3 L13: -0.2288 L23: 0.6550 REMARK 3 S TENSOR REMARK 3 S11: -0.0261 S12: -0.1444 S13: 0.0357 REMARK 3 S21: 0.0963 S22: 0.0734 S23: -0.1351 REMARK 3 S31: 0.2043 S32: 0.5894 S33: -0.0474 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 246 A 257 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3960 -1.7890 32.4070 REMARK 3 T TENSOR REMARK 3 T11: 0.0312 T22: 0.3204 REMARK 3 T33: 0.1445 T12: 0.0340 REMARK 3 T13: -0.0571 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 7.2848 L22: 11.0235 REMARK 3 L33: 16.7156 L12: -0.8681 REMARK 3 L13: -2.3687 L23: 7.5834 REMARK 3 S TENSOR REMARK 3 S11: 0.0113 S12: -0.3291 S13: -0.1268 REMARK 3 S21: 0.2176 S22: 0.0928 S23: -0.0074 REMARK 3 S31: 0.3140 S32: 0.5389 S33: -0.1042 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 5W8W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228543. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9273 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 35.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4NQ4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 180MM K2SO4, PROTEIN AT REMARK 280 15MG/ML IN 10MM TRIS-HCL PH7, 50MM NACL, 1MM DTT, 1MM ZN2SO4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 26.80150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.20950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 26.80150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.20950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 64 REMARK 465 ASN A 65 REMARK 465 GLY A 66 REMARK 465 GLU A 67 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 LYS A 126 CD CE NZ REMARK 470 GLU A 242 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 86 151.20 65.95 REMARK 500 SER A 87 -135.33 -94.79 REMARK 500 ALA A 117 37.85 -98.62 REMARK 500 ASP A 245 -154.78 -119.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 507 DISTANCE = 6.31 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 101.4 REMARK 620 3 HIS A 179 NE2 104.7 107.0 REMARK 620 4 HOH A 452 O 124.1 109.1 109.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 CYS A 198 SG 115.3 REMARK 620 3 HIS A 240 NE2 86.0 105.0 REMARK 620 4 HOH A 452 O 93.8 123.7 125.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 DBREF 5W8W A 36 257 UNP P04190 BLA2_BACCE 36 257 SEQRES 1 A 222 LYS THR VAL ILE LYS ASN GLU THR GLY THR ILE SER ILE SEQRES 2 A 222 SER GLN LEU ASN LYS ASN VAL TRP VAL HIS THR GLU LEU SEQRES 3 A 222 GLY SER PHE ASN GLY GLU ALA VAL PRO SER ASN GLY LEU SEQRES 4 A 222 VAL LEU ASN THR SER LYS GLY LEU VAL LEU VAL ASP SER SEQRES 5 A 222 SER TRP ASP ASP LYS LEU THR LYS GLU LEU ILE GLU MET SEQRES 6 A 222 VAL GLU LYS LYS PHE GLN LYS ARG VAL THR ASP VAL ILE SEQRES 7 A 222 ILE THR HIS ALA HIS ALA ASP ARG ILE GLY GLY ILE LYS SEQRES 8 A 222 THR LEU LYS GLU ARG GLY ILE LYS ALA HIS SER THR ALA SEQRES 9 A 222 LEU THR ALA GLU LEU ALA LYS LYS ASN GLY TYR GLU GLU SEQRES 10 A 222 PRO LEU GLY ASP LEU GLN THR VAL THR ASN LEU LYS PHE SEQRES 11 A 222 GLY ASN MET LYS VAL GLU THR PHE TYR PRO GLY LYS GLY SEQRES 12 A 222 HIS THR GLU ASP ASN ILE VAL VAL TRP LEU PRO GLN TYR SEQRES 13 A 222 ASN ILE LEU VAL GLY GLY CYS LEU VAL LYS SER THR SER SEQRES 14 A 222 ALA LYS ASP LEU GLY ASN VAL ALA ASP ALA TYR VAL ASN SEQRES 15 A 222 GLU TRP SER THR SER ILE GLU ASN VAL LEU LYS ARG TYR SEQRES 16 A 222 ARG ASN ILE ASN ALA VAL VAL PRO GLY HIS GLY GLU VAL SEQRES 17 A 222 GLY ASP LYS GLY LEU LEU LEU HIS THR LEU ASP LEU LEU SEQRES 18 A 222 LYS HET ZN A 301 1 HET ZN A 302 1 HET UNX A 303 1 HET SO4 A 304 5 HETNAM ZN ZINC ION HETNAM UNX UNKNOWN ATOM OR ION HETNAM SO4 SULFATE ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 UNX X FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *107(H2 O) HELIX 1 AA1 ASP A 90 GLN A 106 1 17 HELIX 2 AA2 HIS A 118 GLY A 123 1 6 HELIX 3 AA3 GLY A 124 GLY A 132 1 9 HELIX 4 AA4 THR A 138 ASN A 148 1 11 HELIX 5 AA5 CYS A 198 VAL A 200 5 3 HELIX 6 AA6 TYR A 215 TYR A 230 1 16 HELIX 7 AA7 LYS A 246 LEU A 256 1 11 SHEET 1 AA1 7 VAL A 38 LYS A 40 0 SHEET 2 AA1 7 ILE A 46 ASN A 52 -1 O ILE A 48 N ILE A 39 SHEET 3 AA1 7 VAL A 55 GLY A 62 -1 O VAL A 55 N LEU A 51 SHEET 4 AA1 7 VAL A 69 THR A 78 -1 O VAL A 75 N TRP A 56 SHEET 5 AA1 7 GLY A 81 VAL A 85 -1 O VAL A 83 N LEU A 76 SHEET 6 AA1 7 VAL A 109 ILE A 113 1 O THR A 110 N LEU A 82 SHEET 7 AA1 7 LYS A 134 HIS A 136 1 O LYS A 134 N VAL A 112 SHEET 1 AA2 5 VAL A 160 PHE A 165 0 SHEET 2 AA2 5 MET A 168 PHE A 173 -1 O VAL A 170 N LEU A 163 SHEET 3 AA2 5 VAL A 185 LEU A 188 -1 O TRP A 187 N GLU A 171 SHEET 4 AA2 5 ILE A 193 GLY A 197 -1 O VAL A 195 N VAL A 186 SHEET 5 AA2 5 ALA A 235 PRO A 238 1 O VAL A 237 N LEU A 194 LINK NE2 HIS A 116 ZN ZN A 301 1555 1555 2.12 LINK ND1 HIS A 118 ZN ZN A 301 1555 1555 2.12 LINK OD2 ASP A 120 ZN ZN A 302 1555 1555 2.16 LINK NE2 HIS A 179 ZN ZN A 301 1555 1555 2.03 LINK SG CYS A 198 ZN ZN A 302 1555 1555 2.31 LINK NE2 HIS A 240 ZN ZN A 302 1555 1555 2.13 LINK ZN ZN A 301 O HOH A 452 1555 1555 2.17 LINK ZN ZN A 302 O HOH A 452 1555 1555 2.17 SITE 1 AC1 5 HIS A 116 HIS A 118 HIS A 179 ZN A 302 SITE 2 AC1 5 HOH A 452 SITE 1 AC2 5 ASP A 120 CYS A 198 HIS A 240 ZN A 301 SITE 2 AC2 5 HOH A 452 SITE 1 AC3 3 LYS A 103 LYS A 169 GLN A 190 CRYST1 53.603 60.419 69.513 90.00 93.28 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018656 0.000000 0.001069 0.00000 SCALE2 0.000000 0.016551 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014409 0.00000