HEADER TRANSFERASE 22-JUN-17 5W8X TITLE LIPID A DISACCHARIDE SYNTHASE (LPXB)-7 SOLUBILIZING MUTATIONS-BOUND TO TITLE 2 UDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPID-A-DISACCHARIDE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.1.182; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI BL21(DE3); SOURCE 3 ORGANISM_TAXID: 469008; SOURCE 4 GENE: LPXB, ECBD_3437; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PE-SUMO KEYWDS GLYCOSYLTRANSFERASE B, ROSSMANN-LIKE, C-TERMINAL SWAP, DIMER, LIPID A KEYWDS 2 DISACCHARIDE SYNTHASE, RAETZ PATHWAY, LIPID A SYNTHESIS PATHWAY, KEYWDS 3 LIPIOPOLYSACCHARIDE SYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.E.BOHL,H.AIHARA,K.SHI,J.K.LEE REVDAT 4 13-MAR-24 5W8X 1 REMARK REVDAT 3 01-JAN-20 5W8X 1 REMARK REVDAT 2 07-FEB-18 5W8X 1 JRNL REVDAT 1 31-JAN-18 5W8X 0 JRNL AUTH T.E.BOHL,K.SHI,J.K.LEE,H.AIHARA JRNL TITL CRYSTAL STRUCTURE OF LIPID A DISACCHARIDE SYNTHASE LPXB FROM JRNL TITL 2 ESCHERICHIA COLI. JRNL REF NAT COMMUN V. 9 377 2018 JRNL REFN ESSN 2041-1723 JRNL PMID 29371662 JRNL DOI 10.1038/S41467-017-02712-9 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 26651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.0500 - 1.9800 0.75 2051 102 0.3512 0.3278 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.15 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 320 THROUGH 381 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1474 14.2475 -47.3201 REMARK 3 T TENSOR REMARK 3 T11: 0.3930 T22: 0.3462 REMARK 3 T33: 0.2810 T12: 0.0926 REMARK 3 T13: -0.0026 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 3.5064 L22: 3.5726 REMARK 3 L33: 2.6961 L12: 2.1981 REMARK 3 L13: -0.5972 L23: -0.7891 REMARK 3 S TENSOR REMARK 3 S11: -0.2831 S12: 0.4756 S13: -0.2797 REMARK 3 S21: -0.5116 S22: 0.1176 S23: -0.2437 REMARK 3 S31: 0.5317 S32: 0.3299 S33: 0.2091 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0730 37.0764 -23.5764 REMARK 3 T TENSOR REMARK 3 T11: 0.2890 T22: 0.4345 REMARK 3 T33: 0.2784 T12: -0.0014 REMARK 3 T13: 0.0470 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 3.0891 L22: 3.3160 REMARK 3 L33: 4.5206 L12: 0.6019 REMARK 3 L13: -0.3918 L23: 0.1197 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: 0.0187 S13: 0.1582 REMARK 3 S21: -0.2666 S22: -0.0373 S23: -0.2925 REMARK 3 S31: -0.3259 S32: 0.7033 S33: -0.0447 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9511 25.3940 -9.1701 REMARK 3 T TENSOR REMARK 3 T11: 0.3650 T22: 0.3559 REMARK 3 T33: 0.2951 T12: 0.0660 REMARK 3 T13: -0.0156 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 3.1397 L22: 1.6944 REMARK 3 L33: 4.0889 L12: -0.6815 REMARK 3 L13: -2.4956 L23: 0.2370 REMARK 3 S TENSOR REMARK 3 S11: -0.2872 S12: -0.2529 S13: -0.0591 REMARK 3 S21: -0.0576 S22: 0.1225 S23: -0.2193 REMARK 3 S31: 0.8460 S32: 0.6267 S33: 0.2343 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3089 34.0318 -3.5850 REMARK 3 T TENSOR REMARK 3 T11: 0.2676 T22: 0.2806 REMARK 3 T33: 0.3290 T12: -0.0040 REMARK 3 T13: 0.0021 T23: -0.0600 REMARK 3 L TENSOR REMARK 3 L11: 3.5837 L22: 3.7594 REMARK 3 L33: 4.9019 L12: 1.0817 REMARK 3 L13: 0.5580 L23: -0.3423 REMARK 3 S TENSOR REMARK 3 S11: -0.0277 S12: 0.0953 S13: 0.3811 REMARK 3 S21: -0.1124 S22: -0.0771 S23: 0.2611 REMARK 3 S31: -0.3482 S32: -0.3080 S33: 0.1162 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 276 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4714 20.0427 -21.7904 REMARK 3 T TENSOR REMARK 3 T11: 0.5630 T22: 0.4669 REMARK 3 T33: 0.3551 T12: -0.0860 REMARK 3 T13: 0.0160 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: -0.4158 L22: -0.3979 REMARK 3 L33: 5.8010 L12: -0.1269 REMARK 3 L13: 1.8172 L23: 1.8835 REMARK 3 S TENSOR REMARK 3 S11: -0.1441 S12: 0.1810 S13: 0.1336 REMARK 3 S21: -0.1603 S22: -0.0646 S23: 0.0637 REMARK 3 S31: 0.2551 S32: 0.3445 S33: 0.1245 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5W8X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228624. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOVEMBER 3, 2014 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29131 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 153.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 1.27200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX V1.10_2155 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: BIPYRAMIDAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 39% PEG 4000, 0.6 M LICL, 0.1 M TRIS REMARK 280 -HCL PH 8.6 COMBINED 1:1 WITH 8 G/L PROTEIN IN 0.3 M NACL, 5% REMARK 280 GLYCEROL, 20 MM TRIS-HCL PH 7.4, 5 MM DTT WITH 100 MM REMARK 280 TRIMETHYLAMMONIUM CHLORIDE USED AS AN ADDITIVE AT 10 MM OR 10% REMARK 280 OF DROP VOLUME, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.58667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.29333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.29333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 102.58667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ENZYMATIC ACTIVITY ASSAYS SHOWED THAT C-TERMINAL SWAPPED REMARK 300 DIMER FORMS AND CAN PRODUCE AN LPXB MUTANT HETERODIMER WHEREIN REMARK 300 RESIDUES MUTATED IN ONE SUBUNIT ARE PROVIDED IN TRANS BY THE SECOND REMARK 300 SUBUNIT TO FORM AN INTACT ACTIVE SITE THEREBY INCREASING ACTIVITY. REMARK 300 IN OTHER WORDS, COMBINING DIFFERENT MUTANTS OF LPXB COULD PRODUCE REMARK 300 MORE ACTIVITY THAN EITHER MUTANT ALONE, WHICH SUPPORTED THE REMARK 300 FORMATION OF A C-TERMINALLY SWAPPED, INTACT ACTIVE SITE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -51.29333 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 592 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 4 REMARK 465 ALA A 61 REMARK 465 VAL A 62 REMARK 465 MET A 63 REMARK 465 GLY A 64 REMARK 465 ILE A 65 REMARK 465 SER A 66 REMARK 465 GLU A 67 REMARK 465 SER A 68 REMARK 465 SER A 69 REMARK 465 GLY A 70 REMARK 465 ARG A 71 REMARK 465 GLN A 382 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 GLU A 239 CG CD OE1 OE2 REMARK 470 GLU A 247 CG CD OE1 OE2 REMARK 470 LYS A 296 CD CE NZ REMARK 470 ARG A 305 CZ NH1 NH2 REMARK 470 LYS A 308 CG CD CE NZ REMARK 470 LYS A 349 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 55 OD2 ASP A 81 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 580 O HOH A 605 6554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 98 -143.68 51.70 REMARK 500 VAL A 121 124.93 92.54 REMARK 500 SER A 275 -176.22 144.12 REMARK 500 ASP A 310 -0.77 75.78 REMARK 500 GLN A 329 -121.93 54.13 REMARK 500 ASN A 368 69.72 61.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5W8S RELATED DB: PDB REMARK 900 RELATED ID: 5W8N RELATED DB: PDB DBREF1 5W8X A 1 382 UNP A0A140NAT1_ECOBD DBREF2 5W8X A A0A140NAT1 1 382 SEQADV 5W8X SER A 66 UNP A0A140NAT VAL 66 ENGINEERED MUTATION SEQADV 5W8X SER A 68 UNP A0A140NAT VAL 68 ENGINEERED MUTATION SEQADV 5W8X SER A 69 UNP A0A140NAT LEU 69 ENGINEERED MUTATION SEQADV 5W8X SER A 72 UNP A0A140NAT LEU 72 ENGINEERED MUTATION SEQADV 5W8X SER A 75 UNP A0A140NAT LEU 75 ENGINEERED MUTATION SEQADV 5W8X SER A 76 UNP A0A140NAT LEU 76 ENGINEERED MUTATION SEQADV 5W8X SER A 207 UNP A0A140NAT MET 207 ENGINEERED MUTATION SEQRES 1 A 382 MET THR GLU GLN ARG PRO LEU THR ILE ALA LEU VAL ALA SEQRES 2 A 382 GLY GLU THR SER GLY ASP ILE LEU GLY ALA GLY LEU ILE SEQRES 3 A 382 ARG ALA LEU LYS GLU HIS VAL PRO ASN ALA ARG PHE VAL SEQRES 4 A 382 GLY VAL ALA GLY PRO ARG MET GLN ALA GLU GLY CYS GLU SEQRES 5 A 382 ALA TRP TYR GLU MET GLU GLU LEU ALA VAL MET GLY ILE SEQRES 6 A 382 SER GLU SER SER GLY ARG SER ARG ARG SER SER HIS ILE SEQRES 7 A 382 ARG ALA ASP LEU THR LYS ARG PHE GLY GLU LEU LYS PRO SEQRES 8 A 382 ASP VAL PHE VAL GLY ILE ASP ALA PRO ASP PHE ASN ILE SEQRES 9 A 382 THR LEU GLU GLY ASN LEU LYS LYS GLN GLY ILE LYS THR SEQRES 10 A 382 ILE HIS TYR VAL SER PRO SER VAL TRP ALA TRP ARG GLN SEQRES 11 A 382 LYS ARG VAL PHE LYS ILE GLY ARG ALA THR ASP LEU VAL SEQRES 12 A 382 LEU ALA PHE LEU PRO PHE GLU LYS ALA PHE TYR ASP LYS SEQRES 13 A 382 TYR ASN VAL PRO CYS ARG PHE ILE GLY HIS THR MET ALA SEQRES 14 A 382 ASP ALA MET PRO LEU ASP PRO ASP LYS ASN ALA ALA ARG SEQRES 15 A 382 ASP VAL LEU GLY ILE PRO HIS ASP ALA HIS CYS LEU ALA SEQRES 16 A 382 LEU LEU PRO GLY SER ARG GLY ALA GLU VAL GLU SER LEU SEQRES 17 A 382 SER ALA ASP PHE LEU LYS THR ALA GLN LEU LEU ARG GLN SEQRES 18 A 382 THR TYR PRO ASP LEU GLU ILE VAL VAL PRO LEU VAL ASN SEQRES 19 A 382 ALA LYS ARG ARG GLU GLN PHE GLU ARG ILE LYS ALA GLU SEQRES 20 A 382 VAL ALA PRO ASP LEU SER VAL HIS LEU LEU ASP GLY MET SEQRES 21 A 382 GLY ARG GLU ALA MET VAL ALA SER ASP ALA ALA LEU LEU SEQRES 22 A 382 ALA SER GLY THR ALA ALA LEU GLU CYS MET LEU SER LYS SEQRES 23 A 382 CYS PRO MET VAL VAL GLY TYR ARG MET LYS PRO PHE THR SEQRES 24 A 382 PHE TRP LEU ALA LYS ARG LEU VAL LYS THR ASP TYR VAL SEQRES 25 A 382 SER LEU PRO ASN LEU LEU ALA GLY ARG GLU LEU VAL LYS SEQRES 26 A 382 GLU LEU LEU GLN GLU GLU CYS GLU PRO GLN LYS LEU ALA SEQRES 27 A 382 ALA ALA LEU LEU PRO LEU LEU ALA ASN GLY LYS THR SER SEQRES 28 A 382 HIS ALA MET HIS ASP THR PHE ARG GLU LEU HIS GLN GLN SEQRES 29 A 382 ILE ARG CYS ASN ALA ASP GLU GLN ALA ALA GLN ALA VAL SEQRES 30 A 382 LEU GLU LEU ALA GLN HET UDP A 401 36 HETNAM UDP URIDINE-5'-DIPHOSPHATE FORMUL 2 UDP C9 H14 N2 O12 P2 FORMUL 3 HOH *122(H2 O) HELIX 1 AA1 GLU A 15 VAL A 33 1 19 HELIX 2 AA2 GLY A 43 GLU A 49 1 7 HELIX 3 AA3 GLU A 58 LEU A 60 5 3 HELIX 4 AA4 ARG A 73 LYS A 90 1 18 HELIX 5 AA5 ALA A 99 GLN A 113 1 15 HELIX 6 AA6 ARG A 129 THR A 140 1 12 HELIX 7 AA7 LEU A 147 LYS A 156 1 10 HELIX 8 AA8 HIS A 166 MET A 172 1 7 HELIX 9 AA9 ASP A 177 GLY A 186 1 10 HELIX 10 AB1 ARG A 201 TYR A 223 1 23 HELIX 11 AB2 ASN A 234 ALA A 249 1 16 HELIX 12 AB3 MET A 260 SER A 268 1 9 HELIX 13 AB4 GLY A 276 SER A 285 1 10 HELIX 14 AB5 LYS A 296 ASP A 310 1 15 HELIX 15 AB6 SER A 313 GLY A 320 1 8 HELIX 16 AB7 LEU A 328 CYS A 332 5 5 HELIX 17 AB8 GLU A 333 ALA A 346 1 14 HELIX 18 AB9 GLY A 348 ILE A 365 1 18 HELIX 19 AC1 ASN A 368 ALA A 381 1 14 SHEET 1 AA1 7 GLU A 52 GLU A 56 0 SHEET 2 AA1 7 ARG A 37 ALA A 42 1 N PHE A 38 O GLU A 52 SHEET 3 AA1 7 THR A 8 ALA A 13 1 N ILE A 9 O ARG A 37 SHEET 4 AA1 7 VAL A 93 ILE A 97 1 O VAL A 95 N ALA A 10 SHEET 5 AA1 7 THR A 117 TYR A 120 1 O TYR A 120 N GLY A 96 SHEET 6 AA1 7 LEU A 142 ALA A 145 1 O LEU A 144 N HIS A 119 SHEET 7 AA1 7 CYS A 161 PHE A 163 1 O ARG A 162 N VAL A 143 SHEET 1 AA2 5 HIS A 255 ASP A 258 0 SHEET 2 AA2 5 GLU A 227 LEU A 232 1 N ILE A 228 O HIS A 255 SHEET 3 AA2 5 CYS A 193 LEU A 197 1 N LEU A 194 O GLU A 227 SHEET 4 AA2 5 ALA A 270 LEU A 273 1 O LEU A 272 N ALA A 195 SHEET 5 AA2 5 MET A 289 VAL A 291 1 O VAL A 290 N ALA A 271 SITE 1 AC1 9 LEU A 197 PRO A 198 GLY A 199 SER A 200 SITE 2 AC1 9 PRO A 231 VAL A 233 THR A 277 GLU A 281 SITE 3 AC1 9 HOH A 557 CRYST1 67.806 67.806 153.880 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014748 0.008515 0.000000 0.00000 SCALE2 0.000000 0.017029 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006499 0.00000