HEADER BIOSYNTHETIC PROTEIN 24-JUN-17 5WA3 TITLE PYRIDINE SYNTHASE, TBTD, FROM THIOMURACIN BIOSYNTHESIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRIDINE SYNTHASE TBTD; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOBISPORA BISPORA; SOURCE 3 ORGANISM_TAXID: 469371; SOURCE 4 STRAIN: ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 SOURCE 5 / R51; SOURCE 6 GENE: TBIS_0552; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRARE KEYWDS PYRIDINE SYNTHASE, DIELS-ALDER, THIOPEPTIDE, THIOMURACIN, KEYWDS 2 BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.P.COGAN,S.K.NAIR REVDAT 4 04-OCT-23 5WA3 1 REMARK REVDAT 3 13-DEC-17 5WA3 1 JRNL REVDAT 2 06-DEC-17 5WA3 1 JRNL REVDAT 1 22-NOV-17 5WA3 0 JRNL AUTH D.P.COGAN,G.A.HUDSON,Z.ZHANG,T.V.POGORELOV,W.A.VAN DER DONK, JRNL AUTH 2 D.A.MITCHELL,S.K.NAIR JRNL TITL STRUCTURAL INSIGHTS INTO ENZYMATIC [4+2] AZA-CYCLOADDITION JRNL TITL 2 IN THIOPEPTIDE ANTIBIOTIC BIOSYNTHESIS. JRNL REF PROC. NATL. ACAD. SCI. V. 114 12928 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29158402 JRNL DOI 10.1073/PNAS.1716035114 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 104.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 32840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1729 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2600 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4874 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.347 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.271 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.221 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.451 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5007 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4663 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6822 ; 1.870 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10655 ; 1.179 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 612 ; 7.809 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 243 ;34.692 ;20.453 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 748 ;21.011 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 74 ;19.486 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 740 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5651 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1187 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2460 ; 7.893 ; 8.816 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2459 ; 7.887 ; 8.815 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3068 ;11.364 ;13.192 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3069 ;11.363 ;13.194 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2547 ; 7.713 ; 9.132 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2548 ; 7.712 ; 9.133 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3755 ;11.138 ;13.497 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5585 ;14.274 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5586 ;14.273 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5WA3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000228661. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34569 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 55.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5W98 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 M NAH2PO4, 1 M KH2PO4 PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 77.91500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.98425 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.07967 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 77.91500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 44.98425 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.07967 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 77.91500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 44.98425 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.07967 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 89.96849 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 110.15933 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 89.96849 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 110.15933 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 89.96849 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 110.15933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 82010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 GLY A 4 REMARK 465 LEU A 268 REMARK 465 GLU A 269 REMARK 465 TYR A 270 REMARK 465 ALA A 271 REMARK 465 SER A 272 REMARK 465 PRO A 273 REMARK 465 ALA A 274 REMARK 465 GLU A 275 REMARK 465 GLY A 276 REMARK 465 ALA A 277 REMARK 465 ARG A 278 REMARK 465 ASP A 279 REMARK 465 LEU A 280 REMARK 465 PRO A 281 REMARK 465 SER A 282 REMARK 465 LEU A 283 REMARK 465 ALA A 284 REMARK 465 GLU A 285 REMARK 465 VAL A 286 REMARK 465 SER A 287 REMARK 465 ALA A 288 REMARK 465 PHE A 289 REMARK 465 HIS A 290 REMARK 465 ARG A 291 REMARK 465 GLU A 292 REMARK 465 LEU A 293 REMARK 465 GLU A 294 REMARK 465 SER A 295 REMARK 465 ARG A 296 REMARK 465 PRO A 297 REMARK 465 GLU A 298 REMARK 465 TRP A 299 REMARK 465 ALA A 300 REMARK 465 ARG A 301 REMARK 465 LEU A 302 REMARK 465 ARG A 303 REMARK 465 ALA A 351 REMARK 465 HIS A 352 REMARK 465 GLU A 353 REMARK 465 GLU A 354 REMARK 465 VAL A 355 REMARK 465 ALA A 356 REMARK 465 THR A 357 REMARK 465 ARG A 358 REMARK 465 SER B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 GLY B 4 REMARK 465 LEU B 268 REMARK 465 GLU B 269 REMARK 465 TYR B 270 REMARK 465 ALA B 271 REMARK 465 SER B 272 REMARK 465 PRO B 273 REMARK 465 ALA B 274 REMARK 465 GLU B 275 REMARK 465 GLY B 276 REMARK 465 ALA B 277 REMARK 465 ARG B 278 REMARK 465 ASP B 279 REMARK 465 LEU B 280 REMARK 465 PRO B 281 REMARK 465 SER B 282 REMARK 465 LEU B 283 REMARK 465 ALA B 284 REMARK 465 GLU B 285 REMARK 465 VAL B 286 REMARK 465 SER B 287 REMARK 465 ALA B 288 REMARK 465 PHE B 289 REMARK 465 HIS B 290 REMARK 465 ARG B 291 REMARK 465 GLU B 292 REMARK 465 LEU B 293 REMARK 465 GLU B 294 REMARK 465 SER B 295 REMARK 465 ARG B 296 REMARK 465 PRO B 297 REMARK 465 GLU B 298 REMARK 465 TRP B 299 REMARK 465 ALA B 300 REMARK 465 ARG B 301 REMARK 465 LEU B 302 REMARK 465 ARG B 303 REMARK 465 ASP B 304 REMARK 465 SER B 305 REMARK 465 PRO B 306 REMARK 465 ALA B 307 REMARK 465 ALA B 351 REMARK 465 HIS B 352 REMARK 465 GLU B 353 REMARK 465 GLU B 354 REMARK 465 VAL B 355 REMARK 465 ALA B 356 REMARK 465 THR B 357 REMARK 465 ARG B 358 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 235 CG CD OE1 OE2 REMARK 470 ASN A 236 CG OD1 ND2 REMARK 470 THR B 178 CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 45 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP B 20 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG B 54 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 14 81.64 -153.42 REMARK 500 ALA A 16 10.47 -142.32 REMARK 500 LEU A 22 -36.91 -38.62 REMARK 500 ALA A 66 -73.62 -70.98 REMARK 500 ASP A 108 -45.26 67.21 REMARK 500 ASN A 118 41.53 76.41 REMARK 500 PRO A 127 -103.06 0.73 REMARK 500 GLU A 128 -65.99 -145.54 REMARK 500 SER A 157 36.12 -75.47 REMARK 500 ASP A 201 31.30 -95.06 REMARK 500 GLU A 232 26.68 -143.02 REMARK 500 ALA A 234 22.09 48.02 REMARK 500 ASN A 236 74.99 -64.96 REMARK 500 ALA A 238 -168.19 -66.57 REMARK 500 LEU A 266 -78.88 -83.93 REMARK 500 ALA A 307 -72.06 -59.41 REMARK 500 ALA B 38 83.68 -151.82 REMARK 500 ARG B 49 24.51 48.47 REMARK 500 GLU B 107 -70.33 -49.15 REMARK 500 ASP B 108 -47.64 95.07 REMARK 500 GLU B 128 -77.64 -139.88 REMARK 500 THR B 178 -84.82 145.70 REMARK 500 LEU B 181 -64.01 99.81 REMARK 500 SER B 233 -52.77 -136.77 REMARK 500 ALA B 238 36.53 -147.03 REMARK 500 HIS B 239 -37.60 62.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 263 GLY A 264 145.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 TBTD IN THE NCBI DATABASE: WP_050760415.1 DBREF 5WA3 A 1 358 UNP D6Y504 D6Y504_THEBD 1 358 DBREF 5WA3 B 1 358 UNP D6Y504 D6Y504_THEBD 1 358 SEQADV 5WA3 SER A -2 UNP D6Y504 EXPRESSION TAG SEQADV 5WA3 GLY A -1 UNP D6Y504 EXPRESSION TAG SEQADV 5WA3 SER A 0 UNP D6Y504 EXPRESSION TAG SEQADV 5WA3 SER B -2 UNP D6Y504 EXPRESSION TAG SEQADV 5WA3 GLY B -1 UNP D6Y504 EXPRESSION TAG SEQADV 5WA3 SER B 0 UNP D6Y504 EXPRESSION TAG SEQRES 1 A 361 SER GLY SER MET ALA ALA GLY GLU ARG TRP TRP ARG PHE SEQRES 2 A 361 ARG VAL ASP TYR HIS ALA GLY PRO MET ASP ASP LEU ILE SEQRES 3 A 361 LEU ASP GLY VAL ARG PRO ALA PHE ALA ALA PHE ALA ALA SEQRES 4 A 361 GLN ALA PRO MET ALA TYR PHE LEU ARG HIS TRP ARG ARG SEQRES 5 A 361 GLY PRO HIS LEU ARG ILE TYR VAL SER THR THR ARG GLU SEQRES 6 A 361 ALA LEU GLU ALA VAL VAL ARG PRO ALA ILE GLU HIS VAL SEQRES 7 A 361 VAL GLY GLY TYR LEU ARG ALA ARG PRO SER PRO GLY MET SEQRES 8 A 361 ALA ASP PRO SER ALA PHE LEU PRO LEU HIS GLU ARG LEU SEQRES 9 A 361 ALA GLU LEU GLU GLY GLU ASP GLY PRO LEU MET PRO TRP SEQRES 10 A 361 SER PRO ASP ASN THR ILE HIS ALA GLU GLY GLU ARG PRO SEQRES 11 A 361 GLU PRO LEU THR VAL ARG ASP VAL LEU LEU ALA ASP PHE SEQRES 12 A 361 TYR ALA ASP THR THR PRO SER VAL TYR HIS ALA LEU GLU SEQRES 13 A 361 ARG VAL ARG SER GLY ALA SER LEU PRO THR ILE ALA PHE SEQRES 14 A 361 ASP LEU VAL VAL ALA THR ALA HIS ALA LEU SER THR GLY SEQRES 15 A 361 GLY LEU PRO VAL ALA ARG THR SER LEU ARG SER HIS ALA SEQRES 16 A 361 GLU ALA TYR LEU ALA ARG ARG SER ASP GLY VAL ARG LEU SEQRES 17 A 361 ARG GLU LEU TRP ARG ASP HIS TYR ALA ARG ASN ARG GLU SEQRES 18 A 361 ALA PHE THR GLU ARG LEU ILE ALA VAL ALA SER SER ALA SEQRES 19 A 361 GLU SER ALA GLU ASN GLY ALA HIS LEU PRO HIS VAL ARG SEQRES 20 A 361 GLU TRP VAL ARG ARG LEU ARG PRO ILE ARG GLU ARG ALA SEQRES 21 A 361 ARG ALA LEU LEU GLU SER GLY GLU LEU THR LEU GLU TYR SEQRES 22 A 361 ALA SER PRO ALA GLU GLY ALA ARG ASP LEU PRO SER LEU SEQRES 23 A 361 ALA GLU VAL SER ALA PHE HIS ARG GLU LEU GLU SER ARG SEQRES 24 A 361 PRO GLU TRP ALA ARG LEU ARG ASP SER PRO ALA PHE GLY SEQRES 25 A 361 ALA TYR ARG LEU VAL ILE ASN CYS THR TYR LEU HIS LEU SEQRES 26 A 361 THR ARG LEU GLY LEU THR PRO HIS GLN ARG PHE LEU VAL SEQRES 27 A 361 CYS HIS LEU ALA ALA ASP ALA ALA ALA ASP VAL TYR GLY SEQRES 28 A 361 ILE ALA ALA HIS GLU GLU VAL ALA THR ARG SEQRES 1 B 361 SER GLY SER MET ALA ALA GLY GLU ARG TRP TRP ARG PHE SEQRES 2 B 361 ARG VAL ASP TYR HIS ALA GLY PRO MET ASP ASP LEU ILE SEQRES 3 B 361 LEU ASP GLY VAL ARG PRO ALA PHE ALA ALA PHE ALA ALA SEQRES 4 B 361 GLN ALA PRO MET ALA TYR PHE LEU ARG HIS TRP ARG ARG SEQRES 5 B 361 GLY PRO HIS LEU ARG ILE TYR VAL SER THR THR ARG GLU SEQRES 6 B 361 ALA LEU GLU ALA VAL VAL ARG PRO ALA ILE GLU HIS VAL SEQRES 7 B 361 VAL GLY GLY TYR LEU ARG ALA ARG PRO SER PRO GLY MET SEQRES 8 B 361 ALA ASP PRO SER ALA PHE LEU PRO LEU HIS GLU ARG LEU SEQRES 9 B 361 ALA GLU LEU GLU GLY GLU ASP GLY PRO LEU MET PRO TRP SEQRES 10 B 361 SER PRO ASP ASN THR ILE HIS ALA GLU GLY GLU ARG PRO SEQRES 11 B 361 GLU PRO LEU THR VAL ARG ASP VAL LEU LEU ALA ASP PHE SEQRES 12 B 361 TYR ALA ASP THR THR PRO SER VAL TYR HIS ALA LEU GLU SEQRES 13 B 361 ARG VAL ARG SER GLY ALA SER LEU PRO THR ILE ALA PHE SEQRES 14 B 361 ASP LEU VAL VAL ALA THR ALA HIS ALA LEU SER THR GLY SEQRES 15 B 361 GLY LEU PRO VAL ALA ARG THR SER LEU ARG SER HIS ALA SEQRES 16 B 361 GLU ALA TYR LEU ALA ARG ARG SER ASP GLY VAL ARG LEU SEQRES 17 B 361 ARG GLU LEU TRP ARG ASP HIS TYR ALA ARG ASN ARG GLU SEQRES 18 B 361 ALA PHE THR GLU ARG LEU ILE ALA VAL ALA SER SER ALA SEQRES 19 B 361 GLU SER ALA GLU ASN GLY ALA HIS LEU PRO HIS VAL ARG SEQRES 20 B 361 GLU TRP VAL ARG ARG LEU ARG PRO ILE ARG GLU ARG ALA SEQRES 21 B 361 ARG ALA LEU LEU GLU SER GLY GLU LEU THR LEU GLU TYR SEQRES 22 B 361 ALA SER PRO ALA GLU GLY ALA ARG ASP LEU PRO SER LEU SEQRES 23 B 361 ALA GLU VAL SER ALA PHE HIS ARG GLU LEU GLU SER ARG SEQRES 24 B 361 PRO GLU TRP ALA ARG LEU ARG ASP SER PRO ALA PHE GLY SEQRES 25 B 361 ALA TYR ARG LEU VAL ILE ASN CYS THR TYR LEU HIS LEU SEQRES 26 B 361 THR ARG LEU GLY LEU THR PRO HIS GLN ARG PHE LEU VAL SEQRES 27 B 361 CYS HIS LEU ALA ALA ASP ALA ALA ALA ASP VAL TYR GLY SEQRES 28 B 361 ILE ALA ALA HIS GLU GLU VAL ALA THR ARG HELIX 1 AA1 PRO A 18 GLY A 26 1 9 HELIX 2 AA2 GLY A 26 ALA A 33 1 8 HELIX 3 AA3 THR A 60 VAL A 67 1 8 HELIX 4 AA4 VAL A 67 ARG A 83 1 17 HELIX 5 AA5 ASP A 90 ALA A 93 5 4 HELIX 6 AA6 PHE A 94 GLY A 106 1 13 HELIX 7 AA7 THR A 131 SER A 157 1 27 HELIX 8 AA8 SER A 160 LEU A 176 1 17 HELIX 9 AA9 GLY A 180 ALA A 197 1 18 HELIX 10 AB1 ASP A 201 ASN A 216 1 16 HELIX 11 AB2 ASN A 216 ALA A 231 1 16 HELIX 12 AB3 LEU A 240 SER A 263 1 24 HELIX 13 AB4 GLY A 309 LEU A 325 1 17 HELIX 14 AB5 THR A 328 GLY A 348 1 21 HELIX 15 AB6 PRO B 18 GLY B 26 1 9 HELIX 16 AB7 GLY B 26 PHE B 34 1 9 HELIX 17 AB8 THR B 60 VAL B 67 1 8 HELIX 18 AB9 VAL B 67 ARG B 83 1 17 HELIX 19 AC1 ASP B 90 ALA B 93 5 4 HELIX 20 AC2 PHE B 94 GLY B 106 1 13 HELIX 21 AC3 THR B 131 GLY B 158 1 28 HELIX 22 AC4 SER B 160 LEU B 176 1 17 HELIX 23 AC5 ALA B 184 ARG B 199 1 16 HELIX 24 AC6 ASP B 201 ASN B 216 1 16 HELIX 25 AC7 ASN B 216 ALA B 231 1 16 HELIX 26 AC8 PRO B 241 GLY B 264 1 24 HELIX 27 AC9 GLY B 309 LEU B 325 1 17 HELIX 28 AD1 THR B 328 GLY B 348 1 21 SHEET 1 AA1 4 ALA A 41 HIS A 46 0 SHEET 2 AA1 4 HIS A 52 THR A 59 -1 O TYR A 56 N TYR A 42 SHEET 3 AA1 4 ARG A 6 ASP A 13 -1 N PHE A 10 O ILE A 55 SHEET 4 AA1 4 ILE A 120 GLU A 125 -1 O GLU A 123 N ARG A 9 SHEET 1 AA2 4 ALA B 41 HIS B 46 0 SHEET 2 AA2 4 HIS B 52 THR B 59 -1 O TYR B 56 N TYR B 42 SHEET 3 AA2 4 ARG B 6 ASP B 13 -1 N PHE B 10 O ILE B 55 SHEET 4 AA2 4 THR B 119 GLU B 125 -1 O GLY B 124 N ARG B 9 CISPEP 1 MET A 112 PRO A 113 0 -2.93 CISPEP 2 MET B 112 PRO B 113 0 -19.59 CISPEP 3 PRO B 127 GLU B 128 0 -0.28 CRYST1 155.830 155.830 165.239 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006417 0.003705 0.000000 0.00000 SCALE2 0.000000 0.007410 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006052 0.00000