HEADER TRANSFERASE/TRANSFERASE INHIBITOR 24-JUN-17 5WA5
TITLE CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF HUMAN BRD4 IN COMPLEX
TITLE 2 WITH THE INHIBITOR XMD11-50
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 4;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: BROMODOMAIN RESIDUES 42-168;
COMPND 5 SYNONYM: PROTEIN HUNK1;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: BRD4, HUNK1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS KINASE, INHIBITOR, CELL CYCLE, TRANSFERASE-TRANSFERASE INHIBITOR
KEYWDS 2 COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR X.XU,S.C.BLACKLOW
REVDAT 5 04-OCT-23 5WA5 1 REMARK
REVDAT 4 21-JUL-21 5WA5 1 REMARK
REVDAT 3 01-JAN-20 5WA5 1 REMARK
REVDAT 2 16-JAN-19 5WA5 1 JRNL
REVDAT 1 04-JUL-18 5WA5 0
JRNL AUTH J.WANG,T.ERAZO,F.M.FERGUSON,D.L.BUCKLEY,N.GOMEZ,
JRNL AUTH 2 P.MUNOZ-GUARDIOLA,N.DIEGUEZ-MARTINEZ,X.DENG,M.HAO,
JRNL AUTH 3 W.MASSEFSKI,O.FEDOROV,N.K.OFFEI-ADDO,P.M.PARK,L.DAI,
JRNL AUTH 4 A.DIBONA,K.BECHT,N.D.KIM,M.R.MCKEOWN,J.M.ROBERTS,J.ZHANG,
JRNL AUTH 5 T.SIM,D.R.ALESSI,J.E.BRADNER,J.M.LIZCANO,S.C.BLACKLOW,J.QI,
JRNL AUTH 6 X.XU,N.S.GRAY
JRNL TITL STRUCTURAL AND ATROPISOMERIC FACTORS GOVERNING THE
JRNL TITL 2 SELECTIVITY OF PYRIMIDO-BENZODIAZIPINONES AS INHIBITORS OF
JRNL TITL 3 KINASES AND BROMODOMAINS.
JRNL REF ACS CHEM. BIOL. V. 13 2438 2018
JRNL REFN ESSN 1554-8937
JRNL PMID 30102854
JRNL DOI 10.1021/ACSCHEMBIO.7B00638
REMARK 2
REMARK 2 RESOLUTION. 1.17 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.17
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.27
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3
REMARK 3 NUMBER OF REFLECTIONS : 43312
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.151
REMARK 3 R VALUE (WORKING SET) : 0.151
REMARK 3 FREE R VALUE : 0.158
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030
REMARK 3 FREE R VALUE TEST SET COUNT : 2180
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 38.2902 - 2.9530 0.98 2775 151 0.1564 0.1603
REMARK 3 2 2.9530 - 2.3440 0.99 2698 134 0.1534 0.1466
REMARK 3 3 2.3440 - 2.0477 1.00 2655 160 0.1330 0.1325
REMARK 3 4 2.0477 - 1.8605 1.00 2670 126 0.1361 0.1495
REMARK 3 5 1.8605 - 1.7271 1.00 2670 120 0.1381 0.1726
REMARK 3 6 1.7271 - 1.6253 1.00 2612 154 0.1342 0.1417
REMARK 3 7 1.6253 - 1.5439 1.00 2620 137 0.1367 0.1563
REMARK 3 8 1.5439 - 1.4767 1.00 2606 125 0.1372 0.1641
REMARK 3 9 1.4767 - 1.4199 1.00 2634 133 0.1505 0.1588
REMARK 3 10 1.4199 - 1.3709 1.00 2607 152 0.1556 0.1806
REMARK 3 11 1.3709 - 1.3280 1.00 2569 152 0.1616 0.1822
REMARK 3 12 1.3280 - 1.2900 0.99 2589 131 0.1662 0.1801
REMARK 3 13 1.2900 - 1.2561 0.98 2565 145 0.1747 0.2159
REMARK 3 14 1.2561 - 1.2254 0.97 2507 137 0.1857 0.1900
REMARK 3 15 1.2254 - 1.1976 0.93 2403 129 0.2259 0.2076
REMARK 3 16 1.1976 - 1.1721 0.74 1952 94 0.2678 0.2283
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.280
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.008 1119
REMARK 3 ANGLE : 1.361 1525
REMARK 3 CHIRALITY : 0.067 160
REMARK 3 PLANARITY : 0.008 195
REMARK 3 DIHEDRAL : 13.724 433
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 7
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 46 )
REMARK 3 ORIGIN FOR THE GROUP (A): -24.0692 12.6276 -19.1337
REMARK 3 T TENSOR
REMARK 3 T11: 0.1541 T22: 0.2086
REMARK 3 T33: 0.1727 T12: 0.0101
REMARK 3 T13: 0.0072 T23: 0.0177
REMARK 3 L TENSOR
REMARK 3 L11: 8.3256 L22: 3.0063
REMARK 3 L33: 6.9182 L12: 0.9543
REMARK 3 L13: -4.2657 L23: -1.4236
REMARK 3 S TENSOR
REMARK 3 S11: 0.0226 S12: -0.0097 S13: 0.1193
REMARK 3 S21: 0.2273 S22: 0.0681 S23: 0.2314
REMARK 3 S31: -0.1161 S32: -0.5418 S33: -0.0494
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 60 )
REMARK 3 ORIGIN FOR THE GROUP (A): -5.4698 6.2676 -30.7759
REMARK 3 T TENSOR
REMARK 3 T11: 0.1116 T22: 0.1301
REMARK 3 T33: 0.1167 T12: 0.0044
REMARK 3 T13: -0.0116 T23: 0.0028
REMARK 3 L TENSOR
REMARK 3 L11: 2.2581 L22: 0.8695
REMARK 3 L33: 0.7868 L12: 0.6682
REMARK 3 L13: -0.8798 L23: 0.2868
REMARK 3 S TENSOR
REMARK 3 S11: -0.0225 S12: 0.2082 S13: -0.1056
REMARK 3 S21: -0.0565 S22: -0.0333 S23: -0.0101
REMARK 3 S31: 0.0123 S32: -0.0689 S33: 0.0412
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 83 )
REMARK 3 ORIGIN FOR THE GROUP (A): -0.6880 3.4317 -12.6266
REMARK 3 T TENSOR
REMARK 3 T11: 0.1531 T22: 0.1342
REMARK 3 T33: 0.1449 T12: 0.0119
REMARK 3 T13: 0.0038 T23: 0.0213
REMARK 3 L TENSOR
REMARK 3 L11: 1.5236 L22: 0.3118
REMARK 3 L33: 3.0397 L12: -0.2597
REMARK 3 L13: -1.7705 L23: 0.3234
REMARK 3 S TENSOR
REMARK 3 S11: -0.1278 S12: -0.2607 S13: -0.0893
REMARK 3 S21: 0.1468 S22: 0.0557 S23: -0.0362
REMARK 3 S31: 0.2030 S32: 0.2581 S33: 0.0910
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 121 )
REMARK 3 ORIGIN FOR THE GROUP (A): -12.2460 10.5471 -18.2179
REMARK 3 T TENSOR
REMARK 3 T11: 0.1002 T22: 0.1127
REMARK 3 T33: 0.1057 T12: -0.0171
REMARK 3 T13: 0.0012 T23: 0.0014
REMARK 3 L TENSOR
REMARK 3 L11: 1.3784 L22: 0.6523
REMARK 3 L33: 1.3804 L12: -0.4979
REMARK 3 L13: -0.1181 L23: 0.1749
REMARK 3 S TENSOR
REMARK 3 S11: -0.0275 S12: -0.0982 S13: -0.0337
REMARK 3 S21: 0.0657 S22: 0.0125 S23: 0.0235
REMARK 3 S31: 0.0502 S32: -0.1242 S33: 0.0323
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 139 )
REMARK 3 ORIGIN FOR THE GROUP (A): -4.6929 15.8118 -15.8546
REMARK 3 T TENSOR
REMARK 3 T11: 0.1089 T22: 0.1038
REMARK 3 T33: 0.1210 T12: -0.0110
REMARK 3 T13: -0.0036 T23: -0.0069
REMARK 3 L TENSOR
REMARK 3 L11: 1.3825 L22: 1.5227
REMARK 3 L33: 1.9117 L12: -1.3411
REMARK 3 L13: -1.2988 L23: 1.5475
REMARK 3 S TENSOR
REMARK 3 S11: 0.0610 S12: -0.0182 S13: 0.0580
REMARK 3 S21: -0.0080 S22: 0.0009 S23: -0.0709
REMARK 3 S31: -0.0558 S32: 0.0503 S33: -0.0785
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 144 )
REMARK 3 ORIGIN FOR THE GROUP (A): -11.3593 21.3035 -1.9620
REMARK 3 T TENSOR
REMARK 3 T11: 0.1839 T22: 0.1683
REMARK 3 T33: 0.1362 T12: -0.0263
REMARK 3 T13: 0.0056 T23: -0.0122
REMARK 3 L TENSOR
REMARK 3 L11: 1.5381 L22: 3.9676
REMARK 3 L33: 5.1827 L12: 2.1505
REMARK 3 L13: 0.5552 L23: 0.9537
REMARK 3 S TENSOR
REMARK 3 S11: -0.0175 S12: -0.2004 S13: 0.1024
REMARK 3 S21: 0.4942 S22: -0.1104 S23: 0.0469
REMARK 3 S31: -0.1550 S32: -0.0275 S33: 0.0525
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 166 )
REMARK 3 ORIGIN FOR THE GROUP (A): 2.0768 11.5589 -8.6571
REMARK 3 T TENSOR
REMARK 3 T11: 0.1411 T22: 0.1626
REMARK 3 T33: 0.1646 T12: 0.0057
REMARK 3 T13: -0.0309 T23: -0.0017
REMARK 3 L TENSOR
REMARK 3 L11: 2.9136 L22: 1.5877
REMARK 3 L33: 2.0448 L12: -0.7536
REMARK 3 L13: -0.8572 L23: 0.5199
REMARK 3 S TENSOR
REMARK 3 S11: 0.0668 S12: -0.0244 S13: 0.0559
REMARK 3 S21: 0.0648 S22: 0.0218 S23: -0.2272
REMARK 3 S31: -0.0110 S32: 0.3110 S33: -0.0657
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5WA5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-17.
REMARK 100 THE DEPOSITION ID IS D_1000228660.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 19-MAR-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 24-ID-C
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43365
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.170
REMARK 200 RESOLUTION RANGE LOW (A) : 51.670
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5
REMARK 200 DATA REDUNDANCY : 5.000
REMARK 200 R MERGE (I) : 0.03800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.17
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.19
REMARK 200 COMPLETENESS FOR SHELL (%) : 70.7
REMARK 200 DATA REDUNDANCY IN SHELL : 1.80
REMARK 200 R MERGE FOR SHELL (I) : 0.44600
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHENIX
REMARK 200 STARTING MODEL: 4WIV
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 43.04
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM NITRATE, 5% ETHYLENE
REMARK 280 GLYCOL, 18% (W/V) PEG3350, VAPOR DIFFUSION, TEMPERATURE 295K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.11350
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.47750
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.83650
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.47750
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.11350
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.83650
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 430 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 7540 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLU A 167
REMARK 465 GLU A 168
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 155 CE NZ
REMARK 470 GLU A 163 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HG1 THR A 43 O HOH A 302 1.31
REMARK 500 HE ARG A 68 O HOH A 305 1.60
REMARK 500 O HOH A 448 O HOH A 457 1.88
REMARK 500 O HOH A 347 O HOH A 457 1.88
REMARK 500 O HOH A 312 O HOH A 365 1.95
REMARK 500 OE1 GLN A 127 O HOH A 301 2.01
REMARK 500 OG1 THR A 43 O HOH A 302 2.09
REMARK 500 O HOH A 305 O HOH A 395 2.09
REMARK 500 O HOH A 418 O HOH A 449 2.12
REMARK 500 O HOH A 387 O HOH A 437 2.14
REMARK 500 O HOH A 425 O HOH A 460 2.15
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 305 O HOH A 309 3544 2.04
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 4K4 A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203
DBREF 5WA5 A 42 168 UNP O60885 BRD4_HUMAN 42 168
SEQRES 1 A 127 SER THR ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN
SEQRES 2 A 127 LYS PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU
SEQRES 3 A 127 ARG VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA
SEQRES 4 A 127 TRP PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN
SEQRES 5 A 127 LEU PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP
SEQRES 6 A 127 MET GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR
SEQRES 7 A 127 TRP ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET
SEQRES 8 A 127 PHE THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP
SEQRES 9 A 127 ILE VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU
SEQRES 10 A 127 GLN LYS ILE ASN GLU LEU PRO THR GLU GLU
HET 4K4 A 201 80
HET EDO A 202 10
HET EDO A 203 10
HETNAM 4K4 2-[(2-METHOXY-4-{[4-(4-METHYLPIPERAZIN-1-YL)PIPERIDIN-
HETNAM 2 4K4 1-YL]CARBONYL}PHENYL)AMINO]-5,11-DIMETHYL-5,11-
HETNAM 3 4K4 DIHYDRO-6H-PYRIMIDO[4,5-B][1,4]BENZODIAZEPIN-6-ONE
HETNAM EDO 1,2-ETHANEDIOL
HETSYN EDO ETHYLENE GLYCOL
FORMUL 2 4K4 C31 H38 N8 O3
FORMUL 3 EDO 2(C2 H6 O2)
FORMUL 5 HOH *186(H2 O)
HELIX 1 AA1 THR A 60 VAL A 69 1 10
HELIX 2 AA2 VAL A 69 LYS A 76 1 8
HELIX 3 AA3 ALA A 80 GLN A 84 5 5
HELIX 4 AA4 ASP A 96 ILE A 101 1 6
HELIX 5 AA5 ASP A 106 ASN A 116 1 11
HELIX 6 AA6 ASN A 121 ASN A 140 1 20
HELIX 7 AA7 ASP A 144 ASN A 162 1 19
SITE 1 AC1 9 TRP A 81 PRO A 82 LEU A 94 GLU A 115
SITE 2 AC1 9 ASN A 116 ASN A 140 ILE A 146 HOH A 324
SITE 3 AC1 9 HOH A 367
SITE 1 AC2 7 ILE A 100 ILE A 101 LYS A 102 THR A 103
SITE 2 AC2 7 ASN A 135 HOH A 321 HOH A 328
SITE 1 AC3 5 SER A 51 ASN A 52 LYS A 57 TYR A 118
SITE 2 AC3 5 HOH A 327
CRYST1 44.227 51.673 56.955 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.022611 0.000000 0.000000 0.00000
SCALE2 0.000000 0.019352 0.000000 0.00000
SCALE3 0.000000 0.000000 0.017558 0.00000