HEADER MEMBRANE PROTEIN 27-JUN-17 5WB2 TITLE US28 BOUND TO ENGINEERED CHEMOKINE CX3CL1.35 AND NANOBODIES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE PROTEIN US28, NANOBODY 7 FUSION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: US28 PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CX3CL1 PROTEIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: ENGINEERED CHEMOKINE CX3CL1.35; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: NANOBODY B1; COMPND 13 CHAIN: D; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN CYTOMEGALOVIRUS, LAMA GLAMA; SOURCE 3 ORGANISM_COMMON: HHV-5, LLAMA; SOURCE 4 ORGANISM_TAXID: 10359, 9844; SOURCE 5 GENE: US28; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: CX3CL1; SOURCE 15 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 16 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 18 MOL_ID: 3; SOURCE 19 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 20 ORGANISM_TAXID: 32630; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHEMOKINE RECEPTOR, ENGINEERED PROTEINS, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.M.JUDE,J.S.BURG,N.TSUTSUMI,T.F.MILES,K.C.GARCIA REVDAT 4 04-OCT-23 5WB2 1 LINK REVDAT 3 01-JAN-20 5WB2 1 SEQRES REVDAT 2 26-DEC-18 5WB2 1 JRNL REVDAT 1 13-JUN-18 5WB2 0 JRNL AUTH T.F.MILES,K.SPIESS,K.M.JUDE,N.TSUTSUMI,J.S.BURG,J.R.INGRAM, JRNL AUTH 2 D.WAGHRAY,G.M.HJORTO,O.LARSEN,H.L.PLOEGH,M.M.ROSENKILDE, JRNL AUTH 3 K.C.GARCIA JRNL TITL VIRAL GPCR US28 CAN SIGNAL IN RESPONSE TO CHEMOKINE AGONISTS JRNL TITL 2 OF NEARLY UNLIMITED STRUCTURAL DEGENERACY. JRNL REF ELIFE V. 7 2018 JRNL REFN ESSN 2050-084X JRNL PMID 29882741 JRNL DOI 10.7554/ELIFE.35850 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 10332 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.256 REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3773 - 6.6896 0.98 1418 149 0.2262 0.2371 REMARK 3 2 6.6896 - 5.3124 0.99 1343 144 0.2757 0.3349 REMARK 3 3 5.3124 - 4.6416 0.99 1321 151 0.2238 0.2935 REMARK 3 4 4.6416 - 4.2175 1.00 1314 158 0.2281 0.2656 REMARK 3 5 4.2175 - 3.9154 1.00 1287 141 0.2786 0.3500 REMARK 3 6 3.9154 - 3.6847 0.99 1298 151 0.2987 0.3736 REMARK 3 7 3.6847 - 3.5002 1.00 1310 147 0.3200 0.3301 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.530 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5029 REMARK 3 ANGLE : 0.701 6848 REMARK 3 CHIRALITY : 0.040 788 REMARK 3 PLANARITY : 0.004 838 REMARK 3 DIHEDRAL : 10.116 2923 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WB2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000228665. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03323 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS MAY 1, 2016 REMARK 200 DATA SCALING SOFTWARE : XSCALE MAY 1, 2016 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10361 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.02600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 1.26100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: PDB ENTRY 4XT1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES PH 6.0, 50 MM LITHIUM SULFATE, 35 REMARK 280 -39% PEG300, 1% 1,2,3-HEPTANETRIOL IN MONOOLEIN:CHOLESTEROL (9:1) REMARK 280 , LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 23.58500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.47000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.58500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.47000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A -6 REMARK 465 LYS A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 ASP A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 PRO A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 THR A 6 REMARK 465 THR A 7 REMARK 465 ALA A 8 REMARK 465 GLU A 9 REMARK 465 LEU A 10 REMARK 465 THR A 11 REMARK 465 THR A 12 REMARK 465 GLU A 13 REMARK 465 PHE A 14 REMARK 465 ASP A 15 REMARK 465 TYR A 16 REMARK 465 PHE A 981 REMARK 465 ARG A 982 REMARK 465 LEU A 983 REMARK 465 VAL A 984 REMARK 465 PRO A 985 REMARK 465 ARG A 986 REMARK 465 GLY A 987 REMARK 465 SER A 988 REMARK 465 GLY A 989 REMARK 465 GLY A 990 REMARK 465 SER A 991 REMARK 465 GLY A 992 REMARK 465 GLY A 993 REMARK 465 SER A 994 REMARK 465 LEU A 995 REMARK 465 VAL A 996 REMARK 465 ARG B 74 REMARK 465 ASN B 75 REMARK 465 GLY B 76 REMARK 465 SER D 128 REMARK 465 SER D 129 REMARK 465 ARG D 130 REMARK 465 GLY D 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 61 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 62 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 65 CG CD OE1 NE2 REMARK 470 GLN A 91 CG CD OE1 NE2 REMARK 470 ARG A 137 CD NE CZ NH1 NH2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 168 CG CD CE NZ REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 GLN A 172 CG CD OE1 NE2 REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 ARG A 998 CG CD NE CZ NH1 NH2 REMARK 470 GLN A1003 CG CD OE1 NE2 REMARK 470 LYS A1043 CG CD CE NZ REMARK 470 ARG A1071 CG CD NE CZ NH1 NH2 REMARK 470 GLN A1110 CG CD OE1 NE2 REMARK 470 ARG A1119 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1122 CG CD OE1 OE2 REMARK 470 PHE A1125 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 ILE B 19 CG1 CG2 CD1 REMARK 470 ASN B 30 CG OD1 ND2 REMARK 470 ARG B 37 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 GLN B 56 CG CD OE1 NE2 REMARK 470 LYS B 59 CG CD CE NZ REMARK 470 GLN B 63 CG CD OE1 NE2 REMARK 470 ASP B 66 CG OD1 OD2 REMARK 470 ARG B 67 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 68 CG CD OE1 NE2 REMARK 470 THR B 73 OG1 CG2 REMARK 470 THR D 53 OG1 CG2 REMARK 470 LYS D 59 CG CD CE NZ REMARK 470 LYS D 65 CG CD CE NZ REMARK 470 LYS D 76 CG CD CE NZ REMARK 470 TYR D 109 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG D 113 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 115 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 175 O1S MES B 102 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 62 139.85 -171.52 REMARK 500 ASP A 95 119.78 -161.87 REMARK 500 PHE A 197 -64.26 -123.57 REMARK 500 TYR A 291 -54.41 -126.04 REMARK 500 GLN A1001 -136.04 74.53 REMARK 500 ILE A1101 -62.08 61.59 REMARK 500 SER A1117 -178.94 -171.74 REMARK 500 HIS B 4 -5.35 63.39 REMARK 500 LEU D 29 44.76 -85.29 REMARK 500 THR D 91 99.51 -66.53 REMARK 500 THR D 102 74.41 53.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 1206 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 64 NE2 REMARK 620 2 GLU D 44 OE2 73.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 102 DBREF 5WB2 A 1 982 UNP Q80KM9 Q80KM9_HCMV 1 310 DBREF 5WB2 A 983 1125 PDB 5WB2 5WB2 983 1125 DBREF 5WB2 B 10 76 UNP Q6I9S9 Q6I9S9_HUMAN 34 100 DBREF 5WB2 D 1 131 PDB 5WB2 5WB2 1 131 SEQADV 5WB2 TYR A -6 UNP Q80KM9 EXPRESSION TAG SEQADV 5WB2 LYS A -5 UNP Q80KM9 EXPRESSION TAG SEQADV 5WB2 ASP A -4 UNP Q80KM9 EXPRESSION TAG SEQADV 5WB2 ASP A -3 UNP Q80KM9 EXPRESSION TAG SEQADV 5WB2 ASP A -2 UNP Q80KM9 EXPRESSION TAG SEQADV 5WB2 ASP A -1 UNP Q80KM9 EXPRESSION TAG SEQADV 5WB2 ALA A 0 UNP Q80KM9 EXPRESSION TAG SEQADV 5WB2 LEU B 1 UNP Q6I9S9 EXPRESSION TAG SEQADV 5WB2 LEU B 2 UNP Q6I9S9 EXPRESSION TAG SEQADV 5WB2 PRO B 3 UNP Q6I9S9 EXPRESSION TAG SEQADV 5WB2 HIS B 4 UNP Q6I9S9 EXPRESSION TAG SEQADV 5WB2 ALA B 5 UNP Q6I9S9 EXPRESSION TAG SEQADV 5WB2 ASN B 6 UNP Q6I9S9 EXPRESSION TAG SEQADV 5WB2 TYR B 7 UNP Q6I9S9 EXPRESSION TAG SEQADV 5WB2 CYS B 8 UNP Q6I9S9 EXPRESSION TAG SEQADV 5WB2 ALA B 9 UNP Q6I9S9 EXPRESSION TAG SEQRES 1 A 460 TYR LYS ASP ASP ASP ASP ALA MET THR PRO THR THR THR SEQRES 2 A 460 THR ALA GLU LEU THR THR GLU PHE ASP TYR ASP GLU ASP SEQRES 3 A 460 ALA THR PRO CYS VAL PHE THR ASP VAL LEU ASN GLN SER SEQRES 4 A 460 LYS PRO VAL THR LEU PHE LEU TYR GLY VAL VAL PHE LEU SEQRES 5 A 460 PHE GLY SER ILE GLY ASN PHE LEU VAL ILE PHE THR ILE SEQRES 6 A 460 THR TRP ARG ARG ARG ILE GLN YCM SER GLY ASP VAL TYR SEQRES 7 A 460 PHE ILE ASN LEU ALA ALA ALA ASP LEU LEU PHE VAL CYS SEQRES 8 A 460 THR LEU PRO LEU TRP MET GLN TYR LEU LEU ASP HIS ASN SEQRES 9 A 460 SER LEU ALA SER VAL PRO CYS THR LEU LEU THR ALA CYS SEQRES 10 A 460 PHE TYR VAL ALA MET PHE ALA SER LEU CYS PHE ILE THR SEQRES 11 A 460 GLU ILE ALA LEU ASP ARG TYR TYR ALA ILE VAL TYR MET SEQRES 12 A 460 ARG TYR ARG PRO VAL LYS GLN ALA CYS LEU PHE SER ILE SEQRES 13 A 460 PHE TRP TRP ILE PHE ALA VAL ILE ILE ALA ILE PRO HIS SEQRES 14 A 460 PHE MET VAL VAL THR LYS LYS ASP ASN GLN CYS MET THR SEQRES 15 A 460 ASP TYR ASP TYR LEU GLU VAL SER TYR PRO ILE ILE LEU SEQRES 16 A 460 ASN VAL GLU LEU MET LEU GLY ALA PHE VAL ILE PRO LEU SEQRES 17 A 460 SER VAL ILE SER TYR CYS TYR TYR ARG ILE SER ARG ILE SEQRES 18 A 460 VAL ALA VAL SER GLN SER ARG HIS LYS GLY ARG ILE VAL SEQRES 19 A 460 ARG VAL LEU ILE ALA VAL VAL LEU VAL PHE ILE ILE PHE SEQRES 20 A 460 TRP LEU PRO TYR HIS LEU THR LEU PHE VAL ASP THR LEU SEQRES 21 A 460 LYS LEU LEU LYS TRP ILE SER SER SER CYS GLU PHE GLU SEQRES 22 A 460 ARG SER LEU LYS ARG ALA LEU ILE LEU THR GLU SER LEU SEQRES 23 A 460 ALA PHE CYS HIS CYS CYS LEU ASN PRO LEU LEU TYR VAL SEQRES 24 A 460 PHE VAL GLY THR LYS PHE ARG GLN GLU LEU HIS YCM LEU SEQRES 25 A 460 LEU ALA GLU PHE ARG LEU VAL PRO ARG GLY SER GLY GLY SEQRES 26 A 460 SER GLY GLY SER LEU VAL PRO ARG GLY SER GLN VAL GLN SEQRES 27 A 460 LEU VAL GLU SER GLY GLY GLY LEU VAL ARG PRO GLY GLY SEQRES 28 A 460 SER LEU ARG LEU SER CYS ALA ALA SER GLY SER ILE PHE SEQRES 29 A 460 THR ILE TYR ALA MET GLY TRP TYR ARG GLN ALA PRO GLY SEQRES 30 A 460 LYS GLN ARG GLU LEU VAL ALA ARG ILE THR PHE GLY GLY SEQRES 31 A 460 ASP THR ASN TYR ALA ASP SER VAL LYS GLY ARG PHE THR SEQRES 32 A 460 ILE SER ARG ASP ASN ALA LYS ASN ALA VAL TYR LEU GLN SEQRES 33 A 460 MET ASN SER LEU LYS PRO GLU ASP THR ALA VAL TYR TYR SEQRES 34 A 460 CYS ASN ALA GLU GLU THR ILE VAL GLU GLU ALA ASP TYR SEQRES 35 A 460 TRP GLY GLN GLY THR GLN VAL THR VAL SER SER ARG ALA SEQRES 36 A 460 LEU GLU VAL LEU PHE SEQRES 1 B 76 LEU LEU PRO HIS ALA ASN TYR CYS ALA ILE THR CYS SER SEQRES 2 B 76 LYS MET THR SER LYS ILE PRO VAL ALA LEU LEU ILE HIS SEQRES 3 B 76 TYR GLN GLN ASN GLN ALA SER CYS GLY LYS ARG ALA ILE SEQRES 4 B 76 ILE LEU GLU THR ARG GLN HIS ARG LEU PHE CYS ALA ASP SEQRES 5 B 76 PRO LYS GLU GLN TRP VAL LYS ASP ALA MET GLN HIS LEU SEQRES 6 B 76 ASP ARG GLN ALA ALA ALA LEU THR ARG ASN GLY SEQRES 1 D 131 PCA LEU GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 131 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 D 131 TYR SER LEU GLU TYR TYR ALA ILE GLY TRP PHE ARG GLN SEQRES 4 D 131 ALA PRO GLY LYS GLU ARG GLU GLY VAL SER CYS ILE SER SEQRES 5 D 131 THR SER VAL GLY SER THR LYS TYR ALA ASP SER VAL LYS SEQRES 6 D 131 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 D 131 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 D 131 ALA VAL TYR TYR CYS GLY ALA ASP LEU SER THR PHE TYR SEQRES 9 D 131 GLY GLY ASN TYR TYR CYS GLY ASP ARG GLY ILE TYR ASP SEQRES 10 D 131 TYR TYR GLY GLN GLY THR GLN VAL THR VAL SER SER ARG SEQRES 11 D 131 GLY MODRES 5WB2 YCM A 66 CYS MODIFIED RESIDUE MODRES 5WB2 YCM A 304 CYS MODIFIED RESIDUE HET YCM A 66 10 HET YCM A 304 10 HET PCA D 1 8 HET CLR A1201 28 HET CLR A1202 28 HET OLC A1203 25 HET OLC A1204 25 HET OLC A1205 25 HET OLC A1206 8 HET ZN B 101 1 HET MES B 102 12 HETNAM YCM S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE HETNAM PCA PYROGLUTAMIC ACID HETNAM CLR CHOLESTEROL HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM ZN ZINC ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN YCM CYSTEINE-S-ACETAMIDE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 1 YCM 2(C5 H10 N2 O3 S) FORMUL 3 PCA C5 H7 N O3 FORMUL 4 CLR 2(C27 H46 O) FORMUL 6 OLC 4(C21 H40 O4) FORMUL 10 ZN ZN 2+ FORMUL 11 MES C6 H13 N O4 S HELIX 1 AA1 PHE A 25 TRP A 60 1 36 HELIX 2 AA2 YCM A 66 CYS A 84 1 19 HELIX 3 AA3 THR A 85 ASP A 95 1 11 HELIX 4 AA4 HIS A 96 LEU A 99 5 4 HELIX 5 AA5 ALA A 100 VAL A 134 1 35 HELIX 6 AA6 PRO A 140 MET A 164 1 25 HELIX 7 AA7 SER A 183 PHE A 197 1 15 HELIX 8 AA8 PHE A 197 ALA A 216 1 20 HELIX 9 AA9 HIS A 222 LEU A 256 1 35 HELIX 10 AB1 SER A 262 PHE A 281 1 20 HELIX 11 AB2 CYS A 282 TYR A 291 1 10 HELIX 12 AB3 GLY A 295 ALA A 307 1 13 HELIX 13 AB4 LYS A 1086 THR A 1090 5 5 HELIX 14 AB5 GLU B 55 ALA B 70 1 16 HELIX 15 AB6 ASN D 74 LYS D 76 5 3 HELIX 16 AB7 LYS D 87 THR D 91 5 5 SHEET 1 AA1 2 CYS A 23 VAL A 24 0 SHEET 2 AA1 2 ILE B 10 THR B 11 -1 O THR B 11 N CYS A 23 SHEET 1 AA2 2 VAL A 166 LYS A 169 0 SHEET 2 AA2 2 GLN A 172 THR A 175 -1 O MET A 174 N THR A 167 SHEET 1 AA3 4 LEU A1004 SER A1007 0 SHEET 2 AA3 4 SER A1017 ALA A1024 -1 O SER A1021 N SER A1007 SHEET 3 AA3 4 ALA A1077 ASN A1083 -1 O MET A1082 N LEU A1018 SHEET 4 AA3 4 PHE A1067 ASP A1072 -1 N SER A1070 O TYR A1079 SHEET 1 AA4 6 GLY A1010 VAL A1012 0 SHEET 2 AA4 6 THR A1112 VAL A1116 1 O THR A1115 N VAL A1012 SHEET 3 AA4 6 ALA A1091 GLU A1099 -1 N TYR A1093 O THR A1112 SHEET 4 AA4 6 ILE A1031 GLN A1039 -1 N TYR A1037 O TYR A1094 SHEET 5 AA4 6 ARG A1045 THR A1052 -1 O ALA A1049 N TRP A1036 SHEET 6 AA4 6 THR A1057 TYR A1059 -1 O ASN A1058 N ARG A1050 SHEET 1 AA5 4 GLY A1010 VAL A1012 0 SHEET 2 AA5 4 THR A1112 VAL A1116 1 O THR A1115 N VAL A1012 SHEET 3 AA5 4 ALA A1091 GLU A1099 -1 N TYR A1093 O THR A1112 SHEET 4 AA5 4 TYR A1107 TRP A1108 -1 O TYR A1107 N ALA A1097 SHEET 1 AA6 2 ALA A1120 GLU A1122 0 SHEET 2 AA6 2 GLY D 114 TYR D 116 -1 O TYR D 116 N ALA A1120 SHEET 1 AA7 3 LEU B 24 GLN B 29 0 SHEET 2 AA7 3 ILE B 39 THR B 43 -1 O GLU B 42 N HIS B 26 SHEET 3 AA7 3 LEU B 48 ALA B 51 -1 O PHE B 49 N LEU B 41 SHEET 1 AA8 4 GLN D 3 GLU D 6 0 SHEET 2 AA8 4 SER D 17 SER D 25 -1 O ALA D 23 N VAL D 5 SHEET 3 AA8 4 THR D 78 ASN D 84 -1 O LEU D 81 N LEU D 20 SHEET 4 AA8 4 PHE D 68 SER D 71 -1 N SER D 71 O TYR D 80 SHEET 1 AA9 6 GLY D 10 LEU D 11 0 SHEET 2 AA9 6 THR D 123 THR D 126 1 O THR D 126 N GLY D 10 SHEET 3 AA9 6 ALA D 92 ASP D 99 -1 N TYR D 94 O THR D 123 SHEET 4 AA9 6 ALA D 33 ARG D 38 -1 N ALA D 33 O ASP D 99 SHEET 5 AA9 6 GLU D 46 ILE D 51 -1 O GLU D 46 N ARG D 38 SHEET 6 AA9 6 THR D 58 TYR D 60 -1 O LYS D 59 N CYS D 50 SSBOND 1 CYS A 23 CYS A 263 1555 1555 2.04 SSBOND 2 CYS A 104 CYS A 173 1555 1555 2.02 SSBOND 3 CYS A 1022 CYS A 1095 1555 1555 2.03 SSBOND 4 CYS B 8 CYS B 34 1555 1555 2.03 SSBOND 5 CYS B 12 CYS B 50 1555 1555 2.03 SSBOND 6 CYS D 22 CYS D 96 1555 1555 2.03 SSBOND 7 CYS D 50 CYS D 110 1555 1555 2.03 LINK C GLN A 65 N YCM A 66 1555 1555 1.33 LINK C YCM A 66 N SER A 67 1555 1555 1.33 LINK C HIS A 303 N YCM A 304 1555 1555 1.33 LINK C YCM A 304 N LEU A 305 1555 1555 1.33 LINK C PCA D 1 N LEU D 2 1555 1555 1.33 LINK NE2 HIS B 64 ZN ZN B 101 1555 1555 2.39 LINK ZN ZN B 101 OE2 GLU D 44 1554 1555 2.17 SITE 1 AC1 6 ILE A 239 PRO A 243 LEU A 246 PHE A 265 SITE 2 AC1 6 ALA A 272 CLR A1202 SITE 1 AC2 5 SER A 268 ARG A 271 ALA A 272 LEU A 275 SITE 2 AC2 5 CLR A1201 SITE 1 AC3 6 PHE A 46 ARG A 225 ARG A 228 VAL A 229 SITE 2 AC3 6 ALA A 232 LEU A 286 SITE 1 AC4 6 VAL A 102 LEU A 106 ARG A 139 PHE A 150 SITE 2 AC4 6 PHE A 154 OLC A1206 SITE 1 AC5 6 ILE A 73 LEU A 80 LEU A 81 LEU A 106 SITE 2 AC5 6 CYS A 110 PHE A 150 SITE 1 AC6 5 PHE A 116 THR A 123 TRP A 151 GLY A 195 SITE 2 AC6 5 OLC A1204 SITE 1 AC7 3 VAL B 21 HIS B 64 GLU D 44 SITE 1 AC8 9 THR A 108 CYS A 173 THR A 175 TYR A 177 SITE 2 AC8 9 LEU B 1 LEU B 2 PRO B 3 HIS B 4 SITE 3 AC8 9 ASN B 6 CRYST1 47.170 128.940 127.740 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021200 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007756 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007828 0.00000