HEADER METAL BINDING PROTEIN 28-JUN-17 5WBB TITLE PEROXIDE ACTIVATION REGULATED BY HYDROGEN BONDS WITHIN ARTIFICIAL CU TITLE 2 PROTEINS - S112A COMPND MOL_ID: 1; COMPND 2 MOLECULE: STREPTAVIDIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 38-183; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVIDINII; SOURCE 3 ORGANISM_TAXID: 1895; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STREPTAVIDIN, BIOTIN, COPPER, HYDROPEROXO, SECONDARY COORDINATION KEYWDS 2 SPHERE, HYDROGEN BOND, BIOTIN BINDING PROTEIN, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.I.MANN,T.HEINISCH,T.R.WARD,A.S.BOROVIK REVDAT 3 04-OCT-23 5WBB 1 REMARK REVDAT 2 13-DEC-17 5WBB 1 JRNL REVDAT 1 22-NOV-17 5WBB 0 JRNL AUTH S.I.MANN,T.HEINISCH,T.R.WARD,A.S.BOROVIK JRNL TITL PEROXIDE ACTIVATION REGULATED BY HYDROGEN BONDS WITHIN JRNL TITL 2 ARTIFICIAL CU PROTEINS. JRNL REF J. AM. CHEM. SOC. V. 139 17289 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 29117678 JRNL DOI 10.1021/JACS.7B10452 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 23945 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1278 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1740 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2030 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 935 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.64000 REMARK 3 B22 (A**2) : -0.64000 REMARK 3 B33 (A**2) : 1.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.459 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1049 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 847 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1442 ; 1.785 ; 2.168 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1952 ; 0.904 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 128 ; 7.546 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 41 ;27.985 ;23.659 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 135 ;12.023 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;22.458 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 150 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1168 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 221 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 509 ; 1.637 ; 1.640 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 508 ; 1.620 ; 1.632 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 638 ; 2.158 ; 2.450 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 639 ; 2.159 ; 2.458 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 540 ; 2.172 ; 1.974 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 536 ; 2.168 ; 1.961 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 798 ; 2.577 ; 2.821 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1168 ; 3.243 ;20.745 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1149 ; 3.028 ;20.288 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1894 ; 2.664 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 77 ;22.880 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1900 ; 9.459 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5WBB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000228721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25455 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 55.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2QCB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 2.6 M SODIUM REMARK 280 SULFATE, PH 4.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.82000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 28.82000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.99000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.82000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.99500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.82000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 137.98500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.82000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 137.98500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.82000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.99500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 28.82000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 28.82000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 91.99000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 28.82000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 28.82000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 91.99000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 28.82000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 137.98500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 28.82000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 45.99500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 28.82000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 45.99500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 28.82000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 137.98500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 28.82000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 28.82000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 91.99000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 57.64000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 57.64000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 57.64000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 57.64000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 332 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 MET A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 7 REMARK 465 GLN A 8 REMARK 465 GLN A 9 REMARK 465 PRO A 135 REMARK 465 SER A 136 REMARK 465 ALA A 137 REMARK 465 ALA A 138 REMARK 465 SER A 139 REMARK 465 ILE A 140 REMARK 465 ASP A 141 REMARK 465 ALA A 142 REMARK 465 ALA A 143 REMARK 465 LYS A 144 REMARK 465 LYS A 145 REMARK 465 ALA A 146 REMARK 465 GLY A 147 REMARK 465 VAL A 148 REMARK 465 ASN A 149 REMARK 465 ASN A 150 REMARK 465 GLY A 151 REMARK 465 ASN A 152 REMARK 465 PRO A 153 REMARK 465 LEU A 154 REMARK 465 ASP A 155 REMARK 465 ALA A 156 REMARK 465 VAL A 157 REMARK 465 GLN A 158 REMARK 465 GLN A 159 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 121 O1 GOL A 203 10665 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 52 -155.97 67.98 REMARK 500 SER A 52 -158.38 62.01 REMARK 500 GLU A 101 70.76 -112.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 133 LYS A 134 139.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SQ1 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 DBREF 5WBB A 14 159 UNP P22629 SAV_STRAV 38 183 SEQADV 5WBB MET A 1 UNP P22629 EXPRESSION TAG SEQADV 5WBB ALA A 2 UNP P22629 EXPRESSION TAG SEQADV 5WBB SER A 3 UNP P22629 EXPRESSION TAG SEQADV 5WBB MET A 4 UNP P22629 EXPRESSION TAG SEQADV 5WBB THR A 5 UNP P22629 EXPRESSION TAG SEQADV 5WBB GLY A 6 UNP P22629 EXPRESSION TAG SEQADV 5WBB GLY A 7 UNP P22629 EXPRESSION TAG SEQADV 5WBB GLN A 8 UNP P22629 EXPRESSION TAG SEQADV 5WBB GLN A 9 UNP P22629 EXPRESSION TAG SEQADV 5WBB MET A 10 UNP P22629 EXPRESSION TAG SEQADV 5WBB GLY A 11 UNP P22629 EXPRESSION TAG SEQADV 5WBB ARG A 12 UNP P22629 EXPRESSION TAG SEQADV 5WBB ASP A 13 UNP P22629 EXPRESSION TAG SEQADV 5WBB ALA A 112 UNP P22629 SER 136 ENGINEERED MUTATION SEQRES 1 A 159 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG ASP SEQRES 2 A 159 GLU ALA GLY ILE THR GLY THR TRP TYR ASN GLN LEU GLY SEQRES 3 A 159 SER THR PHE ILE VAL THR ALA GLY ALA ASP GLY ALA LEU SEQRES 4 A 159 THR GLY THR TYR GLU SER ALA VAL GLY ASN ALA GLU SER SEQRES 5 A 159 ARG TYR VAL LEU THR GLY ARG TYR ASP SER ALA PRO ALA SEQRES 6 A 159 THR ASP GLY SER GLY THR ALA LEU GLY TRP THR VAL ALA SEQRES 7 A 159 TRP LYS ASN ASN TYR ARG ASN ALA HIS SER ALA THR THR SEQRES 8 A 159 TRP SER GLY GLN TYR VAL GLY GLY ALA GLU ALA ARG ILE SEQRES 9 A 159 ASN THR GLN TRP LEU LEU THR ALA GLY THR THR GLU ALA SEQRES 10 A 159 ASN ALA TRP LYS SER THR LEU VAL GLY HIS ASP THR PHE SEQRES 11 A 159 THR LYS VAL LYS PRO SER ALA ALA SER ILE ASP ALA ALA SEQRES 12 A 159 LYS LYS ALA GLY VAL ASN ASN GLY ASN PRO LEU ASP ALA SEQRES 13 A 159 VAL GLN GLN HET SQ1 A 201 57 HET CU A 202 1 HET GOL A 203 6 HET SO4 A 204 5 HETNAM SQ1 [N-(2-{BIS[2-(PYRIDIN-2-YL-KAPPAN)ETHYL]AMINO- HETNAM 2 SQ1 KAPPAN}ETHYL)-5-(2-OXOHEXAHYDRO-1H-THIENO[3,4- HETNAM 3 SQ1 D]IMIDAZOL-4-YL)PENTANAMIDE]COPPER HETNAM CU COPPER (II) ION HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SQ1 C26 H36 CU N6 O2 S FORMUL 3 CU CU 2+ FORMUL 4 GOL C3 H8 O3 FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *110(H2 O) HELIX 1 AA1 ASP A 13 THR A 18 1 6 HELIX 2 AA2 THR A 115 LYS A 121 5 7 SHEET 1 AA1 9 GLY A 19 ASN A 23 0 SHEET 2 AA1 9 THR A 28 ALA A 33 -1 O PHE A 29 N TRP A 21 SHEET 3 AA1 9 ALA A 38 GLU A 44 -1 O THR A 42 N ILE A 30 SHEET 4 AA1 9 TYR A 54 TYR A 60 -1 O GLY A 58 N LEU A 39 SHEET 5 AA1 9 THR A 71 LYS A 80 -1 O THR A 76 N THR A 57 SHEET 6 AA1 9 ASN A 85 VAL A 97 -1 O SER A 88 N TRP A 79 SHEET 7 AA1 9 ARG A 103 ALA A 112 -1 O ARG A 103 N VAL A 97 SHEET 8 AA1 9 THR A 123 THR A 131 -1 O PHE A 130 N ILE A 104 SHEET 9 AA1 9 GLY A 19 ASN A 23 -1 N TYR A 22 O THR A 131 LINK NE2 HIS A 87 CU CU A 202 1555 1555 2.42 SITE 1 AC1 24 ASN A 23 LEU A 25 SER A 27 TYR A 43 SITE 2 AC1 24 SER A 45 VAL A 47 GLY A 48 ASN A 49 SITE 3 AC1 24 TRP A 79 SER A 88 THR A 90 TRP A 92 SITE 4 AC1 24 TRP A 108 LEU A 110 ALA A 112 TRP A 120 SITE 5 AC1 24 LYS A 121 LEU A 124 ASP A 128 GOL A 203 SITE 6 AC1 24 HOH A 304 HOH A 311 HOH A 349 HOH A 385 SITE 1 AC2 1 HIS A 87 SITE 1 AC3 6 VAL A 47 GLY A 48 TRP A 120 LYS A 121 SITE 2 AC3 6 SQ1 A 201 HOH A 351 SITE 1 AC4 4 GLY A 48 ARG A 84 HOH A 324 HOH A 336 CRYST1 57.640 57.640 183.980 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017349 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017349 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005435 0.00000