HEADER IMMUNE SYSTEM 29-JUN-17 5WCA TITLE CRYSTAL STRUCTURE OF THE BROADLY NEUTRALIZING INFLUENZA A ANTIBODY VRC TITLE 2 315 27-1C08 FAB. COMPND MOL_ID: 1; COMPND 2 MOLECULE: VRC315 27-1C08 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: VRC315 27-1C08 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS IMMUNE SYSTEM, ANTIBODY, INFLUENZA, HUMAN VACCINE TRIAL EXPDTA X-RAY DIFFRACTION AUTHOR M.G.JOYCE,S.F.ANDREWS,J.R.MASCOLA,A.B.MCDERMOTT,P.D.KWONG REVDAT 4 04-OCT-23 5WCA 1 REMARK REVDAT 3 28-NOV-18 5WCA 1 JRNL REVDAT 2 23-AUG-17 5WCA 1 JRNL REVDAT 1 02-AUG-17 5WCA 0 JRNL AUTH S.F.ANDREWS,M.G.JOYCE,M.J.CHAMBERS,R.A.GILLESPIE,M.KANEKIYO, JRNL AUTH 2 K.LEUNG,E.S.YANG,Y.TSYBOVSKY,A.K.WHEATLEY,M.C.CRANK, JRNL AUTH 3 J.C.BOYINGTON,M.S.PRABHAKARAN,S.R.NARPALA,X.CHEN,R.T.BAILER, JRNL AUTH 4 G.CHEN,E.COATES,P.D.KWONG,R.A.KOUP,J.R.MASCOLA,B.S.GRAHAM, JRNL AUTH 5 J.E.LEDGERWOOD,A.B.MCDERMOTT JRNL TITL PREFERENTIAL INDUCTION OF CROSS-GROUP INFLUENZA A JRNL TITL 2 HEMAGGLUTININ STEM-SPECIFIC MEMORY B CELLS AFTER H7N9 JRNL TITL 3 IMMUNIZATION IN HUMANS. JRNL REF SCI IMMUNOL V. 2 2017 JRNL REFN ESSN 2470-9468 JRNL PMID 28783708 JRNL DOI 10.1126/SCIIMMUNOL.AAN2676 REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 90919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.4006 - 4.2517 1.00 2987 153 0.1449 0.1560 REMARK 3 2 4.2517 - 3.3756 1.00 2955 158 0.1439 0.1556 REMARK 3 3 3.3756 - 2.9491 1.00 2937 145 0.1549 0.1644 REMARK 3 4 2.9491 - 2.6796 1.00 2925 164 0.1664 0.1803 REMARK 3 5 2.6796 - 2.4876 1.00 2947 142 0.1689 0.1973 REMARK 3 6 2.4876 - 2.3409 1.00 2949 138 0.1643 0.1758 REMARK 3 7 2.3409 - 2.2237 1.00 2888 164 0.1612 0.1644 REMARK 3 8 2.2237 - 2.1269 1.00 2880 179 0.1590 0.1812 REMARK 3 9 2.1269 - 2.0451 1.00 2913 148 0.1608 0.1726 REMARK 3 10 2.0451 - 1.9745 1.00 2927 153 0.1625 0.1690 REMARK 3 11 1.9745 - 1.9128 1.00 2924 156 0.1577 0.2007 REMARK 3 12 1.9128 - 1.8581 1.00 2897 134 0.1594 0.1614 REMARK 3 13 1.8581 - 1.8092 1.00 2914 146 0.1639 0.1648 REMARK 3 14 1.8092 - 1.7650 1.00 2865 179 0.1664 0.1953 REMARK 3 15 1.7650 - 1.7249 0.99 2917 138 0.1716 0.2150 REMARK 3 16 1.7249 - 1.6882 0.99 2897 154 0.1787 0.2422 REMARK 3 17 1.6882 - 1.6544 0.99 2885 144 0.1804 0.2028 REMARK 3 18 1.6544 - 1.6232 0.99 2887 172 0.1773 0.2081 REMARK 3 19 1.6232 - 1.5942 0.99 2863 170 0.1834 0.1978 REMARK 3 20 1.5942 - 1.5672 0.99 2884 152 0.1860 0.2119 REMARK 3 21 1.5672 - 1.5419 0.99 2849 156 0.1909 0.2085 REMARK 3 22 1.5419 - 1.5182 0.98 2885 123 0.1975 0.2373 REMARK 3 23 1.5182 - 1.4959 0.99 2889 169 0.2056 0.2217 REMARK 3 24 1.4959 - 1.4748 0.99 2804 159 0.2218 0.2493 REMARK 3 25 1.4748 - 1.4549 0.98 2918 154 0.2197 0.2920 REMARK 3 26 1.4549 - 1.4360 0.98 2837 150 0.2287 0.2116 REMARK 3 27 1.4360 - 1.4180 0.98 2804 152 0.2431 0.2575 REMARK 3 28 1.4180 - 1.4009 0.98 2899 137 0.2518 0.2936 REMARK 3 29 1.4009 - 1.3847 0.97 2821 151 0.2840 0.2749 REMARK 3 30 1.3847 - 1.3691 0.83 2419 113 0.2917 0.3067 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3370 REMARK 3 ANGLE : 0.855 4608 REMARK 3 CHIRALITY : 0.074 528 REMARK 3 PLANARITY : 0.005 584 REMARK 3 DIHEDRAL : 15.908 1212 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8325 -8.9793 17.5633 REMARK 3 T TENSOR REMARK 3 T11: 0.1274 T22: 0.1616 REMARK 3 T33: 0.2137 T12: 0.0258 REMARK 3 T13: -0.0065 T23: -0.0617 REMARK 3 L TENSOR REMARK 3 L11: 0.3516 L22: 0.5323 REMARK 3 L33: 0.1074 L12: 0.0314 REMARK 3 L13: 0.1088 L23: 0.1652 REMARK 3 S TENSOR REMARK 3 S11: -0.1066 S12: 0.0010 S13: -0.3207 REMARK 3 S21: 0.1120 S22: 0.1394 S23: -0.1729 REMARK 3 S31: 0.0152 S32: 0.0861 S33: 0.0386 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 18 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6854 -7.4506 8.8253 REMARK 3 T TENSOR REMARK 3 T11: 0.1004 T22: 0.1629 REMARK 3 T33: 0.1300 T12: -0.0197 REMARK 3 T13: 0.0066 T23: -0.0530 REMARK 3 L TENSOR REMARK 3 L11: 0.7308 L22: 1.4834 REMARK 3 L33: 0.8625 L12: -0.2422 REMARK 3 L13: -0.1040 L23: 0.2963 REMARK 3 S TENSOR REMARK 3 S11: -0.0763 S12: 0.2146 S13: -0.1233 REMARK 3 S21: -0.0482 S22: 0.1485 S23: -0.0527 REMARK 3 S31: 0.0383 S32: 0.0245 S33: 0.0985 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 112 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6455 4.7654 34.9414 REMARK 3 T TENSOR REMARK 3 T11: 0.1597 T22: 0.0693 REMARK 3 T33: 0.1509 T12: 0.0044 REMARK 3 T13: 0.0212 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 1.5146 L22: 2.5489 REMARK 3 L33: 2.0267 L12: 0.1873 REMARK 3 L13: -0.6655 L23: 0.6832 REMARK 3 S TENSOR REMARK 3 S11: 0.1036 S12: -0.1261 S13: 0.1543 REMARK 3 S21: 0.3350 S22: -0.0151 S23: 0.0598 REMARK 3 S31: -0.0309 S32: -0.0020 S33: -0.0416 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 3 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4738 14.1052 -0.2316 REMARK 3 T TENSOR REMARK 3 T11: 0.2704 T22: 0.2954 REMARK 3 T33: 0.1576 T12: -0.0538 REMARK 3 T13: 0.0355 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.2973 L22: 0.9802 REMARK 3 L33: 0.1505 L12: -0.1031 REMARK 3 L13: 0.0791 L23: -0.0559 REMARK 3 S TENSOR REMARK 3 S11: -0.1022 S12: 0.3475 S13: -0.0077 REMARK 3 S21: -0.4375 S22: 0.1963 S23: -0.3477 REMARK 3 S31: -0.1213 S32: -0.0728 S33: -0.0019 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 33 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6584 12.5842 9.0794 REMARK 3 T TENSOR REMARK 3 T11: 0.1406 T22: 0.2017 REMARK 3 T33: 0.1169 T12: -0.0128 REMARK 3 T13: -0.0031 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 0.5063 L22: 1.5556 REMARK 3 L33: 0.3088 L12: -0.0572 REMARK 3 L13: 0.3597 L23: -0.0826 REMARK 3 S TENSOR REMARK 3 S11: -0.1134 S12: 0.0516 S13: 0.0278 REMARK 3 S21: -0.0399 S22: 0.1712 S23: 0.0714 REMARK 3 S31: -0.0941 S32: -0.1520 S33: 0.0161 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 92 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5442 12.3055 22.5333 REMARK 3 T TENSOR REMARK 3 T11: 0.0956 T22: 0.0341 REMARK 3 T33: 0.0421 T12: 0.0203 REMARK 3 T13: 0.0210 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 0.9552 L22: 0.7692 REMARK 3 L33: 0.7023 L12: 0.4324 REMARK 3 L13: 0.1282 L23: -0.1366 REMARK 3 S TENSOR REMARK 3 S11: -0.1005 S12: -0.0106 S13: 0.0388 REMARK 3 S21: 0.0504 S22: 0.0101 S23: -0.1212 REMARK 3 S31: -0.1207 S32: -0.0591 S33: -0.4072 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 130 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.3148 18.7331 30.5318 REMARK 3 T TENSOR REMARK 3 T11: 0.1483 T22: 0.0673 REMARK 3 T33: 0.0890 T12: -0.0148 REMARK 3 T13: -0.0017 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 2.1266 L22: 2.5918 REMARK 3 L33: 1.9682 L12: -0.4421 REMARK 3 L13: 0.4817 L23: -0.0103 REMARK 3 S TENSOR REMARK 3 S11: -0.0333 S12: -0.0682 S13: 0.0465 REMARK 3 S21: -0.0172 S22: -0.0050 S23: -0.2472 REMARK 3 S31: -0.2610 S32: 0.1023 S33: 0.0194 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WCA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000228770. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90935 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.369 REMARK 200 RESOLUTION RANGE LOW (A) : 35.389 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5TY6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG-8000, 25% ISOPROPANOL, 0.1 M REMARK 280 IMIDAZOLE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.89000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN L 1 REMARK 465 SER L 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG L 25 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR L 24 O HOH L 307 1.57 REMARK 500 O HOH H 432 O HOH H 642 1.81 REMARK 500 O HOH L 639 O HOH L 650 1.83 REMARK 500 O HOH L 442 O HOH L 627 1.84 REMARK 500 O HOH H 647 O HOH H 687 1.85 REMARK 500 O HOH L 401 O HOH L 603 1.88 REMARK 500 O HOH H 492 O HOH H 632 1.89 REMARK 500 OE1 GLU L 123 O HOH L 301 1.90 REMARK 500 OE2 GLU H 10 O HOH H 301 1.91 REMARK 500 O HOH H 489 O HOH L 570 1.92 REMARK 500 O HOH L 418 O HOH L 492 1.93 REMARK 500 O HOH L 516 O HOH L 532 1.95 REMARK 500 O HOH H 363 O HOH H 600 1.95 REMARK 500 O HOH L 327 O HOH L 630 1.96 REMARK 500 O HOH L 301 O HOH L 543 2.00 REMARK 500 O HOH L 643 O HOH L 648 2.02 REMARK 500 O HOH L 546 O HOH L 632 2.04 REMARK 500 O HOH L 542 O HOH L 638 2.09 REMARK 500 O HOH L 327 O HOH L 481 2.09 REMARK 500 O HOH L 524 O HOH L 544 2.10 REMARK 500 O THR L 92 O HOH L 302 2.10 REMARK 500 O HOH L 603 O HOH L 631 2.11 REMARK 500 O HOH H 331 O HOH H 633 2.12 REMARK 500 O HOH L 524 O HOH L 529 2.14 REMARK 500 O HOH L 483 O HOH L 642 2.18 REMARK 500 O PRO H 126 NZ LYS H 214 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 653 O HOH H 655 1455 2.02 REMARK 500 O HOH H 564 O HOH H 588 1455 2.06 REMARK 500 O HOH H 694 O HOH L 627 2646 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 144 60.22 61.29 REMARK 500 ALA L 27 -6.59 73.19 REMARK 500 ALA L 27B -113.45 -172.70 REMARK 500 VAL L 27C 92.03 115.53 REMARK 500 ASN L 31 -82.76 -117.52 REMARK 500 VAL L 51 -50.50 77.91 REMARK 500 ASP L 151 -114.86 52.71 REMARK 500 ASN L 170 -5.45 79.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 698 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH H 699 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH L 661 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH L 662 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH L 663 DISTANCE = 6.76 ANGSTROMS DBREF 5WCA H 1 214 PDB 5WCA 5WCA 1 214 DBREF 5WCA L 1 209 PDB 5WCA 5WCA 1 209 SEQRES 1 H 226 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 226 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 226 TYR THR PHE THR GLY ASN TYR VAL HIS TRP VAL ARG GLN SEQRES 4 H 226 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE ASN SEQRES 5 H 226 PRO LYS SER ASP GLY THR ASN TYR ALA GLN LYS PHE GLN SEQRES 6 H 226 GLY ARG VAL THR MET THR ARG ASP THR SER ILE SER THR SEQRES 7 H 226 VAL TYR MET GLU LEU SER ARG LEU ARG SER ASP ASP THR SEQRES 8 H 226 ALA VAL TYR TYR CYS ALA ARG ASP LYS GLY LEU ARG TYR SEQRES 9 H 226 PHE ASP TRP LEU SER GLY GLY MET ASP VAL TRP GLY GLN SEQRES 10 H 226 GLY THR THR VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 11 H 226 PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SEQRES 12 H 226 SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 13 H 226 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 14 H 226 ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 H 226 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 16 H 226 VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS SEQRES 17 H 226 ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 18 H 226 LYS VAL GLU PRO LYS SEQRES 1 L 213 GLN SER ALA LEU THR GLN PRO ALA SER VAL SER GLY SER SEQRES 2 L 213 PRO GLY GLN SER ILE THR ILE SER CYS THR ARG THR ALA SEQRES 3 L 213 ALA ALA VAL THR SER TYR ASN TYR VAL SER TRP TYR GLN SEQRES 4 L 213 GLN HIS PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR GLU SEQRES 5 L 213 VAL SER ASN ARG PRO SER GLY VAL SER ASN ARG PHE SER SEQRES 6 L 213 GLY SER LYS SER GLY ASN SER ALA SER LEU THR ILE SER SEQRES 7 L 213 GLY LEU GLN PRO GLU ASP GLU ALA ASP TYR TYR CYS CYS SEQRES 8 L 213 SER SER THR SER SER THR THR VAL VAL PHE GLY GLY GLY SEQRES 9 L 213 THR LYS VAL THR VAL LEU GLY GLN PRO LYS ALA ASN PRO SEQRES 10 L 213 THR VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 213 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 213 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 L 213 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 213 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 213 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 L 213 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 213 THR VAL ALA PRO THR FORMUL 3 HOH *762(H2 O) HELIX 1 AA1 THR H 28 ASN H 32 5 5 HELIX 2 AA2 GLN H 61 GLN H 64 5 4 HELIX 3 AA3 THR H 73 ILE H 75 5 3 HELIX 4 AA4 ARG H 83 THR H 87 5 5 HELIX 5 AA5 SER H 127 LYS H 129 5 3 HELIX 6 AA6 SER H 156 ALA H 158 5 3 HELIX 7 AA7 SER H 187 LEU H 189 5 3 HELIX 8 AA8 LYS H 201 ASN H 204 5 4 HELIX 9 AA9 GLN L 79 GLU L 83 5 5 HELIX 10 AB1 SER L 121 ALA L 127 1 7 HELIX 11 AB2 THR L 181 HIS L 188 1 8 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 77 LEU H 82 -1 O MET H 80 N VAL H 20 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA2 6 ALA H 88 ASP H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA2 6 VAL H 34 GLN H 39 -1 N HIS H 35 O ALA H 93 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O ASN H 58 N TRP H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA3 4 ALA H 88 ASP H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA3 4 MET H 100H TRP H 103 -1 O VAL H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 THR H 131 SER H 132 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O THR H 135 N SER H 132 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 LYS H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 LEU L 4 THR L 5 0 SHEET 2 AA7 4 ILE L 19 ARG L 25 -1 O THR L 24 N THR L 5 SHEET 3 AA7 4 SER L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 67 O SER L 70 SHEET 1 AA8 5 SER L 9 GLY L 13 0 SHEET 2 AA8 5 THR L 102 VAL L 106 1 O THR L 105 N VAL L 11 SHEET 3 AA8 5 ASP L 85 THR L 92 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 5 TYR L 30 GLN L 38 -1 N GLN L 38 O ASP L 85 SHEET 5 AA8 5 LYS L 45 ILE L 48 -1 O LEU L 47 N TRP L 35 SHEET 1 AA9 4 SER L 9 GLY L 13 0 SHEET 2 AA9 4 THR L 102 VAL L 106 1 O THR L 105 N VAL L 11 SHEET 3 AA9 4 ASP L 85 THR L 92 -1 N TYR L 86 O THR L 102 SHEET 4 AA9 4 VAL L 96 PHE L 98 -1 O VAL L 97 N SER L 90 SHEET 1 AB1 4 THR L 114 PHE L 118 0 SHEET 2 AB1 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 AB1 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 AB1 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 AB2 4 THR L 114 PHE L 118 0 SHEET 2 AB2 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 AB2 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 AB2 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 AB3 4 SER L 153 VAL L 155 0 SHEET 2 AB3 4 THR L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 AB3 4 TYR L 191 HIS L 197 -1 O GLN L 194 N ALA L 147 SHEET 4 AB3 4 SER L 200 VAL L 206 -1 O VAL L 202 N VAL L 195 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.05 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.02 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.01 SSBOND 4 CYS L 134 CYS L 193 1555 1555 2.04 CISPEP 1 PHE H 146 PRO H 147 0 -7.01 CISPEP 2 GLU H 148 PRO H 149 0 -0.37 CISPEP 3 TYR L 140 PRO L 141 0 -3.67 CRYST1 42.647 73.780 70.877 90.00 93.03 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023448 0.000000 0.001243 0.00000 SCALE2 0.000000 0.013554 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014129 0.00000