HEADER TRANSFERASE 30-JUN-17 5WCE TITLE CAULOBACTER CRESCENTUS POL III BETA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE III SUBUNIT BETA; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULOBACTER CRESCENTUS (STRAIN ATCC 19089 / SOURCE 3 CB15); SOURCE 4 ORGANISM_TAXID: 190650; SOURCE 5 STRAIN: ATCC 19089 / CB15; SOURCE 6 GENE: DNAN, CC_0156; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21AI; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETMCSIII KEYWDS DNA REPLICATION DNA CLAMP POL III PROCESSIVITY FACTOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.J.OAKLEY REVDAT 2 04-OCT-23 5WCE 1 REMARK REVDAT 1 26-JUL-17 5WCE 0 JRNL AUTH F.DAWES,A.J.OAKLEY JRNL TITL CRYSTAL STRUCTURE OF POL III BETA FROM CAULOBACTER JRNL TITL 2 CRESCENTUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 59627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3082 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3867 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 191 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5573 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 536 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : -0.62000 REMARK 3 B33 (A**2) : 0.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.35000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.156 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.298 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5758 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5530 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7856 ; 1.763 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12784 ; 1.001 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 761 ; 6.730 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;37.503 ;23.917 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 953 ;13.579 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;13.377 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 936 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6471 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1111 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2981 ; 1.362 ; 1.954 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2980 ; 1.362 ; 1.954 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3727 ; 2.244 ; 2.922 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3728 ; 2.244 ; 2.923 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2777 ; 1.687 ; 2.132 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2777 ; 1.686 ; 2.132 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4117 ; 2.693 ; 3.123 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6190 ; 5.841 ;24.837 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6062 ; 5.650 ;24.119 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 372 B 1 372 22178 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 372 REMARK 3 ORIGIN FOR THE GROUP (A): 59.8612 30.4259 84.4729 REMARK 3 T TENSOR REMARK 3 T11: 0.0297 T22: 0.0549 REMARK 3 T33: 0.0156 T12: -0.0269 REMARK 3 T13: -0.0210 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 3.2827 L22: 0.0302 REMARK 3 L33: 0.3557 L12: 0.1360 REMARK 3 L13: 0.1502 L23: 0.0936 REMARK 3 S TENSOR REMARK 3 S11: 0.0584 S12: -0.0938 S13: -0.0205 REMARK 3 S21: 0.0058 S22: -0.0297 S23: -0.0037 REMARK 3 S31: 0.0336 S32: -0.0950 S33: -0.0287 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 372 REMARK 3 ORIGIN FOR THE GROUP (A): 59.3987 28.9282 45.0794 REMARK 3 T TENSOR REMARK 3 T11: 0.0165 T22: 0.0350 REMARK 3 T33: 0.0170 T12: 0.0219 REMARK 3 T13: -0.0160 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 3.2357 L22: 0.1359 REMARK 3 L33: 0.4042 L12: -0.0088 REMARK 3 L13: 0.0649 L23: -0.2111 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: 0.1008 S13: -0.0582 REMARK 3 S21: -0.0147 S22: -0.0007 S23: 0.0119 REMARK 3 S31: 0.0087 S32: -0.0116 S33: -0.0124 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5WCE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-17. REMARK 100 THE DEPOSITION ID IS D_1000228773. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JAN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62720 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 86.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.34200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4TR8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, PH 7.6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.78600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 SER A 92 REMARK 465 GLY A 93 REMARK 465 MET B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 ALA B 281 REMARK 465 GLU B 282 REMARK 465 LYS B 283 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 23 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 151 CG CD OE1 OE2 REMARK 470 ARG A 153 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 252 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 256 CZ NH1 NH2 REMARK 470 GLU A 282 CD OE1 OE2 REMARK 470 LYS A 283 CG CD CE NZ REMARK 470 ARG B 23 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 24 CG CD NE CZ NH1 NH2 REMARK 470 SER B 92 OG REMARK 470 ASP B 94 CG OD1 OD2 REMARK 470 GLU B 151 CG CD OE1 OE2 REMARK 470 ARG B 153 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 252 CG CD NE CZ NH1 NH2 REMARK 470 SER B 280 OG REMARK 470 SER B 284 OG REMARK 470 ARG B 285 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 304 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 25 O HOH B 401 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 95 CB - CA - C ANGL. DEV. = 14.5 DEGREES REMARK 500 ARG A 104 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 104 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 203 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 PHE B 91 CB - CA - C ANGL. DEV. = 15.8 DEGREES REMARK 500 ARG B 104 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 104 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 203 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 211 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 211 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 24 32.34 -91.98 REMARK 500 LEU A 49 -33.91 80.97 REMARK 500 ARG A 153 44.14 -105.94 REMARK 500 ASN A 157 31.99 -94.08 REMARK 500 ASP A 249 74.44 -69.75 REMARK 500 GLU A 304 42.94 -140.37 REMARK 500 ALA A 305 -0.62 72.15 REMARK 500 ALA A 347 -101.55 -111.91 REMARK 500 LEU B 49 -33.19 80.86 REMARK 500 PHE B 91 48.55 -92.68 REMARK 500 ASP B 94 -25.84 103.19 REMARK 500 ARG B 153 49.63 -106.17 REMARK 500 ASP B 249 75.73 -68.02 REMARK 500 ALA B 305 -3.50 73.83 REMARK 500 ALA B 347 -101.41 -110.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 93 ASP B 94 -134.17 REMARK 500 REMARK 500 REMARK: NULL DBREF 5WCE A 1 372 UNP P0CAU5 DPO3B_CAUCR 1 372 DBREF 5WCE B 1 372 UNP P0CAU5 DPO3B_CAUCR 1 372 SEQADV 5WCE MET A -6 UNP P0CAU5 INITIATING METHIONINE SEQADV 5WCE HIS A -5 UNP P0CAU5 EXPRESSION TAG SEQADV 5WCE HIS A -4 UNP P0CAU5 EXPRESSION TAG SEQADV 5WCE HIS A -3 UNP P0CAU5 EXPRESSION TAG SEQADV 5WCE HIS A -2 UNP P0CAU5 EXPRESSION TAG SEQADV 5WCE HIS A -1 UNP P0CAU5 EXPRESSION TAG SEQADV 5WCE HIS A 0 UNP P0CAU5 EXPRESSION TAG SEQADV 5WCE MET B -6 UNP P0CAU5 INITIATING METHIONINE SEQADV 5WCE HIS B -5 UNP P0CAU5 EXPRESSION TAG SEQADV 5WCE HIS B -4 UNP P0CAU5 EXPRESSION TAG SEQADV 5WCE HIS B -3 UNP P0CAU5 EXPRESSION TAG SEQADV 5WCE HIS B -2 UNP P0CAU5 EXPRESSION TAG SEQADV 5WCE HIS B -1 UNP P0CAU5 EXPRESSION TAG SEQADV 5WCE HIS B 0 UNP P0CAU5 EXPRESSION TAG SEQRES 1 A 379 MET HIS HIS HIS HIS HIS HIS MET LYS LEU THR ILE GLU SEQRES 2 A 379 ARG ALA ALA LEU LEU LYS ALA LEU GLY HIS VAL GLN SER SEQRES 3 A 379 VAL VAL GLU ARG ARG ASN THR ILE PRO ILE LEU SER ASN SEQRES 4 A 379 ILE LEU LEU SER ALA GLU GLY ASP ARG LEU SER PHE SER SEQRES 5 A 379 ALA THR ASP LEU ASP MET GLU ILE ILE ASP GLU GLY PHE SEQRES 6 A 379 ALA GLN ILE ASP VAL PRO GLY GLN ILE THR ALA PRO ALA SEQRES 7 A 379 HIS THR LEU TYR GLU ILE VAL ARG LYS LEU PRO ASP GLY SEQRES 8 A 379 ALA ASP VAL SER LEU SER PHE SER GLY ASP ASP PRO ARG SEQRES 9 A 379 LEU VAL ILE GLN ALA GLY ARG SER ARG PHE ASN LEU PRO SEQRES 10 A 379 VAL LEU PRO ALA GLY ASP PHE PRO VAL MET SER SER ASP SEQRES 11 A 379 GLY LEU SER SER ARG ILE ALA VAL ASP THR ASN GLU LEU SEQRES 12 A 379 ILE ARG LEU ILE ASP LYS THR ARG PHE ALA ILE SER THR SEQRES 13 A 379 GLU GLU THR ARG TYR TYR LEU ASN GLY LEU TYR VAL HIS SEQRES 14 A 379 THR VAL ASN GLU GLY GLY GLU THR LYS LEU ARG ALA VAL SEQRES 15 A 379 ALA THR ASP GLY HIS ARG LEU ALA LEU ALA GLU MET PRO SEQRES 16 A 379 ALA PRO GLU GLY ALA VAL GLY ILE PRO GLY VAL ILE VAL SEQRES 17 A 379 PRO ARG LYS THR ILE ALA GLU ALA ARG ARG LEU MET GLU SEQRES 18 A 379 SER ALA GLY GLU THR VAL ASP LEU GLN VAL SER PRO GLN SEQRES 19 A 379 LYS VAL ARG PHE GLU PHE GLY ALA ALA ALA LEU THR SER SEQRES 20 A 379 LYS VAL ILE ASP GLY ALA PHE PRO ASP TYR MET ARG VAL SEQRES 21 A 379 ILE PRO ARG ASP ASN ALA LYS ILE LEU THR LEU ASP ASN SEQRES 22 A 379 ASP LEU PHE ALA LYS ALA VAL ASP ARG VAL ALA THR ILE SEQRES 23 A 379 SER ALA GLU LYS SER ARG SER VAL LYS LEU ALA VAL GLU SEQRES 24 A 379 PRO GLY ARG ILE THR LEU THR VAL ARG ASN MET GLU ALA SEQRES 25 A 379 GLY GLN ALA VAL GLU GLU VAL GLU VAL ASP TYR ASP GLY SEQRES 26 A 379 GLU PRO PHE GLU ILE GLY PHE ASN ALA ARG TYR LEU LEU SEQRES 27 A 379 ASP VAL CYS GLY GLN ILE ALA GLY PRO GLN ALA GLU PHE SEQRES 28 A 379 ARG PHE ALA ASP PRO ALA SER PRO THR LEU VAL VAL ASP SEQRES 29 A 379 PRO VAL ASP PRO GLY VAL LYS TYR VAL LEU MET PRO LEU SEQRES 30 A 379 ARG VAL SEQRES 1 B 379 MET HIS HIS HIS HIS HIS HIS MET LYS LEU THR ILE GLU SEQRES 2 B 379 ARG ALA ALA LEU LEU LYS ALA LEU GLY HIS VAL GLN SER SEQRES 3 B 379 VAL VAL GLU ARG ARG ASN THR ILE PRO ILE LEU SER ASN SEQRES 4 B 379 ILE LEU LEU SER ALA GLU GLY ASP ARG LEU SER PHE SER SEQRES 5 B 379 ALA THR ASP LEU ASP MET GLU ILE ILE ASP GLU GLY PHE SEQRES 6 B 379 ALA GLN ILE ASP VAL PRO GLY GLN ILE THR ALA PRO ALA SEQRES 7 B 379 HIS THR LEU TYR GLU ILE VAL ARG LYS LEU PRO ASP GLY SEQRES 8 B 379 ALA ASP VAL SER LEU SER PHE SER GLY ASP ASP PRO ARG SEQRES 9 B 379 LEU VAL ILE GLN ALA GLY ARG SER ARG PHE ASN LEU PRO SEQRES 10 B 379 VAL LEU PRO ALA GLY ASP PHE PRO VAL MET SER SER ASP SEQRES 11 B 379 GLY LEU SER SER ARG ILE ALA VAL ASP THR ASN GLU LEU SEQRES 12 B 379 ILE ARG LEU ILE ASP LYS THR ARG PHE ALA ILE SER THR SEQRES 13 B 379 GLU GLU THR ARG TYR TYR LEU ASN GLY LEU TYR VAL HIS SEQRES 14 B 379 THR VAL ASN GLU GLY GLY GLU THR LYS LEU ARG ALA VAL SEQRES 15 B 379 ALA THR ASP GLY HIS ARG LEU ALA LEU ALA GLU MET PRO SEQRES 16 B 379 ALA PRO GLU GLY ALA VAL GLY ILE PRO GLY VAL ILE VAL SEQRES 17 B 379 PRO ARG LYS THR ILE ALA GLU ALA ARG ARG LEU MET GLU SEQRES 18 B 379 SER ALA GLY GLU THR VAL ASP LEU GLN VAL SER PRO GLN SEQRES 19 B 379 LYS VAL ARG PHE GLU PHE GLY ALA ALA ALA LEU THR SER SEQRES 20 B 379 LYS VAL ILE ASP GLY ALA PHE PRO ASP TYR MET ARG VAL SEQRES 21 B 379 ILE PRO ARG ASP ASN ALA LYS ILE LEU THR LEU ASP ASN SEQRES 22 B 379 ASP LEU PHE ALA LYS ALA VAL ASP ARG VAL ALA THR ILE SEQRES 23 B 379 SER ALA GLU LYS SER ARG SER VAL LYS LEU ALA VAL GLU SEQRES 24 B 379 PRO GLY ARG ILE THR LEU THR VAL ARG ASN MET GLU ALA SEQRES 25 B 379 GLY GLN ALA VAL GLU GLU VAL GLU VAL ASP TYR ASP GLY SEQRES 26 B 379 GLU PRO PHE GLU ILE GLY PHE ASN ALA ARG TYR LEU LEU SEQRES 27 B 379 ASP VAL CYS GLY GLN ILE ALA GLY PRO GLN ALA GLU PHE SEQRES 28 B 379 ARG PHE ALA ASP PRO ALA SER PRO THR LEU VAL VAL ASP SEQRES 29 B 379 PRO VAL ASP PRO GLY VAL LYS TYR VAL LEU MET PRO LEU SEQRES 30 B 379 ARG VAL FORMUL 3 HOH *536(H2 O) HELIX 1 AA1 ARG A 7 SER A 19 1 13 HELIX 2 AA2 ILE A 27 LEU A 30 5 4 HELIX 3 AA3 ALA A 71 LEU A 81 1 11 HELIX 4 AA4 PRO A 113 PHE A 117 5 5 HELIX 5 AA5 THR A 133 LYS A 142 1 10 HELIX 6 AA6 THR A 143 ILE A 147 5 5 HELIX 7 AA7 ARG A 203 GLU A 214 1 12 HELIX 8 AA8 ASP A 249 VAL A 253 5 5 HELIX 9 AA9 ASN A 266 THR A 278 1 13 HELIX 10 AB1 ALA A 327 ILE A 337 1 11 HELIX 11 AB2 ARG B 7 SER B 19 1 13 HELIX 12 AB3 ILE B 27 LEU B 30 5 4 HELIX 13 AB4 ALA B 71 LEU B 81 1 11 HELIX 14 AB5 PRO B 113 PHE B 117 5 5 HELIX 15 AB6 THR B 133 LYS B 142 1 10 HELIX 16 AB7 THR B 143 ILE B 147 5 5 HELIX 17 AB8 TYR B 154 LEU B 156 5 3 HELIX 18 AB9 ARG B 203 SER B 215 1 13 HELIX 19 AC1 ASP B 249 VAL B 253 5 5 HELIX 20 AC2 ASN B 266 THR B 278 1 13 HELIX 21 AC3 ALA B 327 ILE B 337 1 11 SHEET 1 AA1 9 GLN A 60 VAL A 63 0 SHEET 2 AA1 9 LYS A 2 GLU A 6 -1 N THR A 4 O GLN A 60 SHEET 3 AA1 9 ASP A 86 SER A 90 -1 O VAL A 87 N ILE A 5 SHEET 4 AA1 9 LEU A 98 ALA A 102 -1 O VAL A 99 N SER A 90 SHEET 5 AA1 9 SER A 105 LEU A 109 -1 O PHE A 107 N ILE A 100 SHEET 6 AA1 9 GLN B 307 GLU B 313 -1 O GLN B 307 N ASN A 108 SHEET 7 AA1 9 ARG B 295 ARG B 301 -1 N LEU B 298 O GLU B 310 SHEET 8 AA1 9 SER B 286 GLU B 292 -1 N LYS B 288 O THR B 299 SHEET 9 AA1 9 PHE B 321 ASN B 326 -1 O ILE B 323 N LEU B 289 SHEET 1 AA2 8 GLY A 65 PRO A 70 0 SHEET 2 AA2 8 ASN A 32 GLU A 38 -1 N ALA A 37 O GLY A 65 SHEET 3 AA2 8 ARG A 41 THR A 47 -1 O SER A 43 N SER A 36 SHEET 4 AA2 8 MET A 51 PHE A 58 -1 O ILE A 53 N ALA A 46 SHEET 5 AA2 8 ALA A 236 LYS A 241 -1 O THR A 239 N GLU A 52 SHEET 6 AA2 8 LYS A 228 PHE A 233 -1 N VAL A 229 O SER A 240 SHEET 7 AA2 8 THR A 219 VAL A 224 -1 N ASP A 221 O GLU A 232 SHEET 8 AA2 8 ILE A 129 ASP A 132 -1 N VAL A 131 O VAL A 220 SHEET 1 AA3 8 VAL A 199 PRO A 202 0 SHEET 2 AA3 8 GLY A 158 GLU A 166 -1 N VAL A 161 O VAL A 199 SHEET 3 AA3 8 GLU A 169 THR A 177 -1 O ARG A 173 N HIS A 162 SHEET 4 AA3 8 ARG A 181 PRO A 188 -1 O ALA A 185 N ALA A 174 SHEET 5 AA3 8 ASP A 360 LEU A 367 -1 O GLY A 362 N GLU A 186 SHEET 6 AA3 8 THR A 353 ASP A 357 -1 N VAL A 355 O TYR A 365 SHEET 7 AA3 8 GLN A 341 PHE A 346 -1 N GLU A 343 O VAL A 356 SHEET 8 AA3 8 LYS A 260 ASP A 265 -1 N LYS A 260 O PHE A 346 SHEET 1 AA4 9 PHE A 321 ASN A 326 0 SHEET 2 AA4 9 SER A 286 GLU A 292 -1 N LEU A 289 O ILE A 323 SHEET 3 AA4 9 ARG A 295 ARG A 301 -1 O THR A 299 N LYS A 288 SHEET 4 AA4 9 GLN A 307 GLU A 313 -1 O GLU A 310 N LEU A 298 SHEET 5 AA4 9 SER B 105 LEU B 109 -1 O ARG B 106 N VAL A 309 SHEET 6 AA4 9 LEU B 98 ALA B 102 -1 N ILE B 100 O PHE B 107 SHEET 7 AA4 9 ASP B 86 SER B 90 -1 N SER B 90 O VAL B 99 SHEET 8 AA4 9 LYS B 2 GLU B 6 -1 N ILE B 5 O VAL B 87 SHEET 9 AA4 9 GLN B 60 VAL B 63 -1 O GLN B 60 N THR B 4 SHEET 1 AA5 8 GLY B 65 PRO B 70 0 SHEET 2 AA5 8 ASN B 32 GLU B 38 -1 N ALA B 37 O GLY B 65 SHEET 3 AA5 8 ARG B 41 THR B 47 -1 O SER B 43 N SER B 36 SHEET 4 AA5 8 MET B 51 PHE B 58 -1 O ILE B 53 N ALA B 46 SHEET 5 AA5 8 ALA B 236 LYS B 241 -1 O THR B 239 N GLU B 52 SHEET 6 AA5 8 LYS B 228 PHE B 233 -1 N VAL B 229 O SER B 240 SHEET 7 AA5 8 THR B 219 VAL B 224 -1 N ASP B 221 O GLU B 232 SHEET 8 AA5 8 ILE B 129 ASP B 132 -1 N VAL B 131 O VAL B 220 SHEET 1 AA6 8 VAL B 199 PRO B 202 0 SHEET 2 AA6 8 GLY B 158 GLU B 166 -1 N VAL B 161 O VAL B 199 SHEET 3 AA6 8 GLU B 169 THR B 177 -1 O ARG B 173 N HIS B 162 SHEET 4 AA6 8 ARG B 181 PRO B 188 -1 O ALA B 185 N ALA B 174 SHEET 5 AA6 8 ASP B 360 LEU B 367 -1 O VAL B 366 N LEU B 182 SHEET 6 AA6 8 THR B 353 ASP B 357 -1 N THR B 353 O LEU B 367 SHEET 7 AA6 8 GLN B 341 PHE B 346 -1 N GLU B 343 O VAL B 356 SHEET 8 AA6 8 LYS B 260 ASP B 265 -1 N LYS B 260 O PHE B 346 CRYST1 83.855 59.572 86.490 90.00 92.89 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011925 0.000000 0.000602 0.00000 SCALE2 0.000000 0.016786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011577 0.00000