HEADER MEMBRANE PROTEIN 04-JUL-17 5WD7 TITLE STRUCTURE OF A BACTERIAL POLYSIALYLTRANSFERASE IN COMPLEX WITH TITLE 2 FONDAPARINUX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIAD; COMPND 3 CHAIN: A, M; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MANNHEIMIA HAEMOLYTICA; SOURCE 3 ORGANISM_TAXID: 75985; SOURCE 4 GENE: SIAD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS POLYSIALYLTRANSFERASE, GT-B, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.J.WORRALL,C.LIZAK,N.C.J.STRYNADKA REVDAT 3 13-MAR-24 5WD7 1 HETSYN REVDAT 2 29-JUL-20 5WD7 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 HETSYN FORMUL LINK SITE REVDAT 2 3 1 ATOM REVDAT 1 02-AUG-17 5WD7 0 JRNL AUTH C.LIZAK,L.J.WORRALL,L.BAUMANN,M.M.PFLEIDERER,G.VOLKERS, JRNL AUTH 2 T.SUN,L.SIM,W.WAKARCHUK,S.G.WITHERS,N.C.J.STRYNADKA JRNL TITL X-RAY CRYSTALLOGRAPHIC STRUCTURE OF A BACTERIAL JRNL TITL 2 POLYSIALYLTRANSFERASE PROVIDES INSIGHT INTO THE BIOSYNTHESIS JRNL TITL 3 OF CAPSULAR POLYSIALIC ACID. JRNL REF SCI REP V. 7 5842 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28724897 JRNL DOI 10.1038/S41598-017-05627-Z REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19333 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 938 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1376 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6380 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 101 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.83000 REMARK 3 B22 (A**2) : -0.83000 REMARK 3 B33 (A**2) : 2.70000 REMARK 3 B12 (A**2) : -0.42000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.436 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.363 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.514 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6649 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6418 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8939 ; 1.603 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14971 ; 0.965 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 768 ; 6.602 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 293 ;38.691 ;24.061 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1353 ;18.645 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;17.464 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 990 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6994 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1335 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3069 ; 6.002 ; 8.521 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3068 ; 6.002 ; 8.521 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3838 ; 9.300 ;12.790 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3839 ; 9.299 ;12.789 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3580 ; 6.344 ; 9.228 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3581 ; 6.343 ; 9.228 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5102 ; 9.998 ;13.559 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 26780 ;15.065 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 26781 ;15.065 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 20 401 M 20 401 23666 0.17 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5WD7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000228817. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00635 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20333 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 44.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 1.39200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% - 24% PEG3350 (V/V), 140 - 250 MM REMARK 280 MG2SO4 AND 100 MM MES PH 7.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.96500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 199.93000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 199.93000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 99.96500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, M, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 CYS A 93 CA - CB - SG ANGL. DEV. = 7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 24 62.46 -109.35 REMARK 500 ALA A 69 -12.04 -49.27 REMARK 500 SER A 97 73.31 62.63 REMARK 500 LYS A 121 71.09 45.86 REMARK 500 PHE A 130 24.34 -146.13 REMARK 500 ARG A 132 -131.66 58.44 REMARK 500 ASN A 175 -176.07 -69.42 REMARK 500 CYS A 221 129.70 -35.05 REMARK 500 PRO A 261 47.69 -71.68 REMARK 500 PRO A 263 110.06 -31.24 REMARK 500 LYS A 283 63.44 37.66 REMARK 500 LYS A 293 41.05 -87.64 REMARK 500 ALA A 338 21.60 -144.99 REMARK 500 ALA M 69 -15.56 -47.11 REMARK 500 LYS M 121 70.30 46.79 REMARK 500 PHE M 130 22.22 -146.90 REMARK 500 ARG M 132 -140.31 53.08 REMARK 500 TYR M 230 39.11 -98.59 REMARK 500 SER M 232 76.79 -161.45 REMARK 500 PRO M 263 111.11 -31.72 REMARK 500 LYS M 283 62.05 37.93 REMARK 500 ASP M 308 39.14 -89.89 REMARK 500 SER M 319 48.16 -159.96 REMARK 500 ILE M 337 -70.40 -66.53 REMARK 500 ALA M 338 17.82 -143.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 20 PHE A 21 -140.01 REMARK 500 MET M 20 PHE M 21 -138.83 REMARK 500 REMARK 500 REMARK: NULL DBREF 5WD7 A 21 401 UNP G4RIN4 G4RIN4_MANHA 21 401 DBREF 5WD7 M 21 401 UNP G4RIN4 G4RIN4_MANHA 21 401 SEQADV 5WD7 MET A 20 UNP G4RIN4 INITIATING METHIONINE SEQADV 5WD7 ALA A 68 UNP G4RIN4 LYS 68 CONFLICT SEQADV 5WD7 ALA A 69 UNP G4RIN4 LYS 69 CONFLICT SEQADV 5WD7 MET M 20 UNP G4RIN4 INITIATING METHIONINE SEQADV 5WD7 ALA M 68 UNP G4RIN4 LYS 68 CONFLICT SEQADV 5WD7 ALA M 69 UNP G4RIN4 LYS 69 CONFLICT SEQRES 1 A 382 MET PHE LEU LYS PHE HIS LEU ALA GLU ASP TYR ARG LYS SEQRES 2 A 382 THR THR ASN LEU PHE PHE ILE SER GLN MET GLY GLN LEU SEQRES 3 A 382 GLU GLN TYR GLN GLY LEU ILE GLU LYS LEU LYS LEU LYS SEQRES 4 A 382 ASN ASN VAL LEU ILE VAL LEU TYR THR ALA ALA ASN GLN SEQRES 5 A 382 LEU MET PRO LYS ASN ILE ALA GLU ARG CYS ASN LYS GLU SEQRES 6 A 382 LEU PHE ASN SER ILE ARG PHE LEU CYS LEU PRO LYS SER SEQRES 7 A 382 PRO MET ARG LEU ASN ILE LYS ASN TYR ILE MET MET LEU SEQRES 8 A 382 ASN SER TYR LYS LEU LEU LEU LYS ARG ILE LYS PRO LYS SEQRES 9 A 382 GLU LEU TYR ILE SER SER PHE GLU ARG HIS TYR SER LEU SEQRES 10 A 382 LEU GLY THR LEU ALA LYS ASN MET GLY PHE LYS VAL ASN SEQRES 11 A 382 LEU VAL GLU GLU GLY THR GLY THR TYR LYS TYR SER SER SEQRES 12 A 382 MET GLN GLU ALA CYS LYS LYS LEU ASP ASP SER MET ASN SEQRES 13 A 382 TYR GLN GLU LYS LYS VAL TYR LYS LYS ILE SER LYS SER SEQRES 14 A 382 PHE ILE TYR LYS ASN ILE ARG SER SER LEU LYS PRO PHE SEQRES 15 A 382 ASP SER PHE ASP HIS ILE TYR VAL ALA PHE PRO GLU LYS SEQRES 16 A 382 VAL LYS ASN VAL PHE LYS CYS ASN LYS ILE SER PHE PHE SEQRES 17 A 382 SER ILE TYR GLU SER ARG LEU GLU ASN GLU HIS VAL SER SEQRES 18 A 382 GLU PHE ILE ARG ASN ASN LYS CYS SER LYS LYS ASN ILE SEQRES 19 A 382 ILE PHE CYS ALA GLN ARG TYR PRO ILE PRO GLU ARG GLU SEQRES 20 A 382 TYR ILE SER THR ILE LEU ASP ILE LEU TYR LYS TYR ALA SEQRES 21 A 382 LYS GLU TYR LYS THR LYS VAL PHE ILE LYS LEU HIS PRO SEQRES 22 A 382 LYS GLU ARG ILE GLU THR ILE ASP VAL TYR LYS GLU ILE SEQRES 23 A 382 SER LYS ASP LYS GLN GLY LEU ILE ILE MET GLU ASN ILE SEQRES 24 A 382 SER PHE PRO ALA GLU ASP PHE ILE SER GLN LEU LYS PRO SEQRES 25 A 382 ARG LYS VAL LEU SER ILE ALA SER THR SER LEU VAL TYR SEQRES 26 A 382 THR THR LEU ILE SER LYS ASP ILE LYS ALA ILE SER ILE SEQRES 27 A 382 TYR PRO LEU PHE ARG LYS GLU VAL LEU LYS LYS ILE GLU SEQRES 28 A 382 TYR LYS GLU GLU TYR PHE LYS ASP ILE GLU SER HIS TYR SEQRES 29 A 382 SER LEU LEU SER LYS PHE ASP GLY ILE ARG ILE LEU ASN SEQRES 30 A 382 ASN THR ASN GLU ILE SEQRES 1 M 382 MET PHE LEU LYS PHE HIS LEU ALA GLU ASP TYR ARG LYS SEQRES 2 M 382 THR THR ASN LEU PHE PHE ILE SER GLN MET GLY GLN LEU SEQRES 3 M 382 GLU GLN TYR GLN GLY LEU ILE GLU LYS LEU LYS LEU LYS SEQRES 4 M 382 ASN ASN VAL LEU ILE VAL LEU TYR THR ALA ALA ASN GLN SEQRES 5 M 382 LEU MET PRO LYS ASN ILE ALA GLU ARG CYS ASN LYS GLU SEQRES 6 M 382 LEU PHE ASN SER ILE ARG PHE LEU CYS LEU PRO LYS SER SEQRES 7 M 382 PRO MET ARG LEU ASN ILE LYS ASN TYR ILE MET MET LEU SEQRES 8 M 382 ASN SER TYR LYS LEU LEU LEU LYS ARG ILE LYS PRO LYS SEQRES 9 M 382 GLU LEU TYR ILE SER SER PHE GLU ARG HIS TYR SER LEU SEQRES 10 M 382 LEU GLY THR LEU ALA LYS ASN MET GLY PHE LYS VAL ASN SEQRES 11 M 382 LEU VAL GLU GLU GLY THR GLY THR TYR LYS TYR SER SER SEQRES 12 M 382 MET GLN GLU ALA CYS LYS LYS LEU ASP ASP SER MET ASN SEQRES 13 M 382 TYR GLN GLU LYS LYS VAL TYR LYS LYS ILE SER LYS SER SEQRES 14 M 382 PHE ILE TYR LYS ASN ILE ARG SER SER LEU LYS PRO PHE SEQRES 15 M 382 ASP SER PHE ASP HIS ILE TYR VAL ALA PHE PRO GLU LYS SEQRES 16 M 382 VAL LYS ASN VAL PHE LYS CYS ASN LYS ILE SER PHE PHE SEQRES 17 M 382 SER ILE TYR GLU SER ARG LEU GLU ASN GLU HIS VAL SER SEQRES 18 M 382 GLU PHE ILE ARG ASN ASN LYS CYS SER LYS LYS ASN ILE SEQRES 19 M 382 ILE PHE CYS ALA GLN ARG TYR PRO ILE PRO GLU ARG GLU SEQRES 20 M 382 TYR ILE SER THR ILE LEU ASP ILE LEU TYR LYS TYR ALA SEQRES 21 M 382 LYS GLU TYR LYS THR LYS VAL PHE ILE LYS LEU HIS PRO SEQRES 22 M 382 LYS GLU ARG ILE GLU THR ILE ASP VAL TYR LYS GLU ILE SEQRES 23 M 382 SER LYS ASP LYS GLN GLY LEU ILE ILE MET GLU ASN ILE SEQRES 24 M 382 SER PHE PRO ALA GLU ASP PHE ILE SER GLN LEU LYS PRO SEQRES 25 M 382 ARG LYS VAL LEU SER ILE ALA SER THR SER LEU VAL TYR SEQRES 26 M 382 THR THR LEU ILE SER LYS ASP ILE LYS ALA ILE SER ILE SEQRES 27 M 382 TYR PRO LEU PHE ARG LYS GLU VAL LEU LYS LYS ILE GLU SEQRES 28 M 382 TYR LYS GLU GLU TYR PHE LYS ASP ILE GLU SER HIS TYR SEQRES 29 M 382 SER LEU LEU SER LYS PHE ASP GLY ILE ARG ILE LEU ASN SEQRES 30 M 382 ASN THR ASN GLU ILE HET ZDO B 1 21 HET IDS B 2 16 HET SUS B 3 23 HET BDP B 4 12 HET SGN B 5 19 HET SO4 M 501 5 HET SO4 M 502 5 HETNAM ZDO METHYL 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D- HETNAM 2 ZDO GLUCOPYRANOSIDE HETNAM IDS 2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID HETNAM SUS 2-DEOXY-3,6-DI-O-SULFO-2-(SULFOAMINO)-ALPHA-D- HETNAM 2 SUS GLUCOPYRANOSE HETNAM BDP BETA-D-GLUCOPYRANURONIC ACID HETNAM SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN IDS O2-SULFO-GLUCURONIC ACID; 2-O-SULFO-ALPHA-L-IDURONIC HETSYN 2 IDS ACID; 2-O-SULFO-L-IDURONIC ACID; 2-O-SULFO-IDURONIC HETSYN 3 IDS ACID HETSYN SUS 3,6-DI-O-SULFO-N-SULFO-ALPHA-D-GLUCOSAMINE; 2-DEOXY-3, HETSYN 2 SUS 6-DI-O-SULFO-2-(SULFOAMINO)-ALPHA-D-GLUCOSE; 2-DEOXY- HETSYN 3 SUS 3,6-DI-O-SULFO-2-(SULFOAMINO)-D-GLUCOSE; 2-DEOXY-3,6- HETSYN 4 SUS DI-O-SULFO-2-(SULFOAMINO)-GLUCOSE HETSYN BDP BETA-D-GLUCURONIC ACID; D-GLUCURONIC ACID; GLUCURONIC HETSYN 2 BDP ACID HETSYN SGN N,O6-DISULFO-GLUCOSAMINE; 6-O-SULFO-N-SULFO-ALPHA-D- HETSYN 2 SGN GLUCOSAMINE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D- HETSYN 3 SGN GLUCOSE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-D-GLUCOSE; HETSYN 4 SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-GLUCOSE FORMUL 3 ZDO C7 H15 N O11 S2 FORMUL 3 IDS C6 H10 O10 S FORMUL 3 SUS C6 H13 N O14 S3 FORMUL 3 BDP C6 H10 O7 FORMUL 3 SGN C6 H13 N O11 S2 FORMUL 4 SO4 2(O4 S 2-) HELIX 1 AA1 MET A 42 LYS A 56 1 15 HELIX 2 AA2 THR A 67 ASN A 70 5 4 HELIX 3 AA3 GLN A 71 CYS A 81 1 11 HELIX 4 AA4 ASN A 82 PHE A 86 5 5 HELIX 5 AA5 ASN A 102 LYS A 121 1 20 HELIX 6 AA6 ARG A 132 MET A 144 1 13 HELIX 7 AA7 THR A 155 LYS A 159 5 5 HELIX 8 AA8 SER A 162 SER A 173 1 12 HELIX 9 AA9 ASN A 175 SER A 188 1 14 HELIX 10 AB1 ILE A 194 LEU A 198 5 5 HELIX 11 AB2 PRO A 212 LYS A 216 5 5 HELIX 12 AB3 ASN A 236 LYS A 247 1 12 HELIX 13 AB4 PRO A 263 LYS A 283 1 21 HELIX 14 AB5 ARG A 295 LYS A 307 1 13 HELIX 15 AB6 PRO A 321 LYS A 330 1 10 HELIX 16 AB7 THR A 340 SER A 349 1 10 HELIX 17 AB8 ILE A 357 LEU A 366 1 10 HELIX 18 AB9 LYS A 372 SER A 387 1 16 HELIX 19 AC1 ASN A 397 ILE A 401 5 5 HELIX 20 AC2 GLY M 43 LYS M 56 1 14 HELIX 21 AC3 THR M 67 ASN M 70 5 4 HELIX 22 AC4 GLN M 71 CYS M 81 1 11 HELIX 23 AC5 ASN M 102 LYS M 121 1 20 HELIX 24 AC6 ARG M 132 MET M 144 1 13 HELIX 25 AC7 GLY M 154 LYS M 159 5 6 HELIX 26 AC8 SER M 162 SER M 173 1 12 HELIX 27 AC9 ASN M 175 SER M 188 1 14 HELIX 28 AD1 PHE M 189 LEU M 198 5 10 HELIX 29 AD2 PRO M 212 ASN M 217 1 6 HELIX 30 AD3 ASN M 236 ASN M 246 1 11 HELIX 31 AD4 PRO M 263 LYS M 283 1 21 HELIX 32 AD5 ARG M 295 LYS M 307 1 13 HELIX 33 AD6 PRO M 321 LYS M 330 1 10 HELIX 34 AD7 THR M 340 SER M 349 1 10 HELIX 35 AD8 ILE M 357 LEU M 366 1 10 HELIX 36 AD9 LYS M 372 SER M 387 1 16 HELIX 37 AE1 ASN M 397 ILE M 401 5 5 SHEET 1 AA1 7 SER A 88 CYS A 93 0 SHEET 2 AA1 7 ASN A 60 TYR A 66 1 N VAL A 64 O LEU A 92 SHEET 3 AA1 7 ASN A 35 ILE A 39 1 N ILE A 39 O LEU A 65 SHEET 4 AA1 7 GLU A 124 ILE A 127 1 O TYR A 126 N LEU A 36 SHEET 5 AA1 7 LYS A 147 VAL A 151 1 O VAL A 151 N ILE A 127 SHEET 6 AA1 7 HIS A 206 VAL A 209 1 O TYR A 208 N LEU A 150 SHEET 7 AA1 7 ILE A 224 PHE A 226 1 O SER A 225 N ILE A 207 SHEET 1 AA2 6 LEU A 312 MET A 315 0 SHEET 2 AA2 6 VAL A 286 LYS A 289 1 N ILE A 288 O ILE A 313 SHEET 3 AA2 6 ILE A 253 CYS A 256 1 N PHE A 255 O PHE A 287 SHEET 4 AA2 6 LYS A 333 SER A 336 1 O LEU A 335 N ILE A 254 SHEET 5 AA2 6 LYS A 353 SER A 356 1 O LYS A 353 N VAL A 334 SHEET 6 AA2 6 ILE A 392 ILE A 394 1 O ARG A 393 N ALA A 354 SHEET 1 AA3 7 SER M 88 CYS M 93 0 SHEET 2 AA3 7 ASN M 60 TYR M 66 1 N VAL M 64 O LEU M 92 SHEET 3 AA3 7 ASN M 35 ILE M 39 1 N PHE M 37 O ILE M 63 SHEET 4 AA3 7 GLU M 124 ILE M 127 1 O GLU M 124 N LEU M 36 SHEET 5 AA3 7 LYS M 147 VAL M 151 1 O VAL M 151 N ILE M 127 SHEET 6 AA3 7 HIS M 206 VAL M 209 1 O TYR M 208 N LEU M 150 SHEET 7 AA3 7 ILE M 224 PHE M 226 1 O SER M 225 N VAL M 209 SHEET 1 AA4 6 LEU M 312 MET M 315 0 SHEET 2 AA4 6 VAL M 286 LYS M 289 1 N ILE M 288 O ILE M 313 SHEET 3 AA4 6 ILE M 253 CYS M 256 1 N ILE M 253 O PHE M 287 SHEET 4 AA4 6 LYS M 333 SER M 336 1 O LEU M 335 N ILE M 254 SHEET 5 AA4 6 LYS M 353 SER M 356 1 O LYS M 353 N VAL M 334 SHEET 6 AA4 6 ARG M 393 ILE M 394 1 O ARG M 393 N ALA M 354 LINK O4 ZDO B 1 C1 IDS B 2 1555 1555 1.40 LINK O4 IDS B 2 C1 SUS B 3 1555 1555 1.40 LINK O4 SUS B 3 C1 BDP B 4 1555 1555 1.39 LINK O4 BDP B 4 C1 SGN B 5 1555 1555 1.41 CRYST1 78.312 78.312 299.895 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012769 0.007372 0.000000 0.00000 SCALE2 0.000000 0.014745 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003335 0.00000