HEADER ONCOPROTEIN, HYDROLASE 05-JUL-17 5WDO TITLE H-RAS BOUND TO GMP-PNP AT 277K COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-RAS-1, HA-RAS, TRANSFORMING PROTEIN P21, C-H-RAS, P21RAS; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS SMALL G-PROTEIN, GTPASE, ONCOPROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.C.COFSKY,P.BANDARU,C.L.GEE,J.KURIYAN REVDAT 4 04-OCT-23 5WDO 1 LINK REVDAT 3 20-NOV-19 5WDO 1 REMARK REVDAT 2 13-SEP-17 5WDO 1 REMARK REVDAT 1 19-JUL-17 5WDO 0 JRNL AUTH P.BANDARU,N.H.SHAH,M.BHATTACHARYYA,J.P.BARTON,Y.KONDO, JRNL AUTH 2 J.C.COFSKY,C.L.GEE,A.K.CHAKRABORTY,T.KORTEMME,R.RANGANATHAN, JRNL AUTH 3 J.KURIYAN JRNL TITL DECONSTRUCTION OF THE RAS SWITCHING CYCLE THROUGH SATURATION JRNL TITL 2 MUTAGENESIS. JRNL REF ELIFE V. 6 2017 JRNL REFN ESSN 2050-084X JRNL PMID 28686159 JRNL DOI 10.7554/ELIFE.27810 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1254 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6061 - 3.4318 1.00 2828 174 0.1251 0.1493 REMARK 3 2 3.4318 - 2.7240 1.00 2772 132 0.1351 0.1679 REMARK 3 3 2.7240 - 2.3797 1.00 2719 141 0.1331 0.1488 REMARK 3 4 2.3797 - 2.1622 1.00 2763 107 0.1344 0.1757 REMARK 3 5 2.1622 - 2.0072 1.00 2710 161 0.1384 0.1838 REMARK 3 6 2.0072 - 1.8888 1.00 2687 150 0.1543 0.1870 REMARK 3 7 1.8888 - 1.7942 1.00 2703 153 0.1835 0.2015 REMARK 3 8 1.7942 - 1.7161 1.00 2713 115 0.2075 0.2174 REMARK 3 9 1.7161 - 1.6501 1.00 2717 121 0.2526 0.2843 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1608 REMARK 3 ANGLE : 1.129 2218 REMARK 3 CHIRALITY : 0.062 236 REMARK 3 PLANARITY : 0.006 306 REMARK 3 DIHEDRAL : 18.254 989 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WDO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000228381. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.88557 REMARK 200 MONOCHROMATOR : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : PT/RH COATED COLLIMATING AND REMARK 200 TOROID FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOV 1, 2016 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25873 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 45.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.80 REMARK 200 R MERGE (I) : 0.17500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.60 REMARK 200 R MERGE FOR SHELL (I) : 3.18300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX 1.11.1_2575 REMARK 200 STARTING MODEL: PDB ENTRY 3K8Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG3350, 100 MM CALCIUM ACETATE, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 44.97950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.96893 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 45.58867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 44.97950 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.96893 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 45.58867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 44.97950 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.96893 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 45.58867 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 44.97950 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.96893 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 45.58867 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 44.97950 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.96893 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 45.58867 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 44.97950 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.96893 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 45.58867 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 51.93785 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 91.17733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 51.93785 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 91.17733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 51.93785 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 91.17733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 51.93785 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 91.17733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 51.93785 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 91.17733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 51.93785 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 91.17733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 203 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 405 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 421 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 425 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 429 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 96 O HOH A 301 1.51 REMARK 500 HH22 ARG A 97 O HOH A 307 1.59 REMARK 500 OH TYR A 96 O HOH A 301 2.10 REMARK 500 O HOH A 309 O HOH A 364 2.15 REMARK 500 OD2 ASP A 154 O HOH A 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 304 O HOH A 304 16453 1.76 REMARK 500 O HOH A 303 O HOH A 308 16453 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -74.14 -90.92 REMARK 500 ILE A 36 -69.94 -95.74 REMARK 500 GLU A 37 115.96 -161.16 REMARK 500 GLU A 37 115.96 -161.66 REMARK 500 ARG A 149 -1.48 78.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 82.1 REMARK 620 3 GNP A 205 O3G 171.6 89.9 REMARK 620 4 GNP A 205 O2B 90.9 172.1 97.1 REMARK 620 5 HOH A 322 O 89.9 87.5 92.4 88.7 REMARK 620 6 HOH A 323 O 87.3 90.8 90.2 92.6 177.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 28 O REMARK 620 2 ASP A 30 OD1 82.5 REMARK 620 3 GLU A 31 OE1 95.7 84.7 REMARK 620 4 ASP A 33 OD1 83.8 77.1 13.4 REMARK 620 5 ASP A 33 OD1 82.4 84.5 13.4 7.7 REMARK 620 6 ASP A 33 OD2 83.5 87.9 13.1 10.9 3.5 REMARK 620 7 ASP A 33 OD2 84.2 81.6 11.7 4.5 3.5 6.5 REMARK 620 8 HOH A 363 O 163.2 80.7 82.7 92.3 95.9 95.8 93.3 REMARK 620 9 HOH A 381 O 89.8 88.2 170.4 164.6 170.0 172.7 168.8 89.7 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 314 O REMARK 620 2 HOH A 314 O 105.9 REMARK 620 3 HOH A 347 O 82.3 162.3 REMARK 620 4 HOH A 347 O 86.3 82.3 82.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 205 DBREF 5WDO A 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 5WDO PHE A -3 UNP P01112 EXPRESSION TAG SEQADV 5WDO GLN A -2 UNP P01112 EXPRESSION TAG SEQADV 5WDO GLY A -1 UNP P01112 EXPRESSION TAG SEQADV 5WDO HIS A 0 UNP P01112 EXPRESSION TAG SEQRES 1 A 170 PHE GLN GLY HIS MET THR GLU TYR LYS LEU VAL VAL VAL SEQRES 2 A 170 GLY ALA GLY GLY VAL GLY LYS SER ALA LEU THR ILE GLN SEQRES 3 A 170 LEU ILE GLN ASN HIS PHE VAL ASP GLU TYR ASP PRO THR SEQRES 4 A 170 ILE GLU ASP SER TYR ARG LYS GLN VAL VAL ILE ASP GLY SEQRES 5 A 170 GLU THR CYS LEU LEU ASP ILE LEU ASP THR ALA GLY GLN SEQRES 6 A 170 GLU GLU TYR SER ALA MET ARG ASP GLN TYR MET ARG THR SEQRES 7 A 170 GLY GLU GLY PHE LEU CYS VAL PHE ALA ILE ASN ASN THR SEQRES 8 A 170 LYS SER PHE GLU ASP ILE HIS GLN TYR ARG GLU GLN ILE SEQRES 9 A 170 LYS ARG VAL LYS ASP SER ASP ASP VAL PRO MET VAL LEU SEQRES 10 A 170 VAL GLY ASN LYS CYS ASP LEU ALA ALA ARG THR VAL GLU SEQRES 11 A 170 SER ARG GLN ALA GLN ASP LEU ALA ARG SER TYR GLY ILE SEQRES 12 A 170 PRO TYR ILE GLU THR SER ALA LYS THR ARG GLN GLY VAL SEQRES 13 A 170 GLU ASP ALA PHE TYR THR LEU VAL ARG GLU ILE ARG GLN SEQRES 14 A 170 HIS HET CA A 201 1 HET MG A 202 1 HET MG A 203 1 HET NA A 204 1 HET GNP A 205 45 HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 2 CA CA 2+ FORMUL 3 MG 2(MG 2+) FORMUL 5 NA NA 1+ FORMUL 6 GNP C10 H17 N6 O13 P3 FORMUL 7 HOH *129(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 GLN A 61 ALA A 66 5 6 HELIX 3 AA3 MET A 67 GLY A 75 1 9 HELIX 4 AA4 ASN A 86 ASP A 92 1 7 HELIX 5 AA5 ASP A 92 ASP A 105 1 14 HELIX 6 AA6 GLU A 126 GLY A 138 1 13 HELIX 7 AA7 GLY A 151 ARG A 164 1 14 SHEET 1 AA1 6 GLU A 37 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 THR A 58 -1 O CYS A 51 N VAL A 44 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N TYR A 4 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 LINK OG SER A 17 MG MG A 202 1555 1555 2.07 LINK O PHE A 28 CA CA A 201 1555 1555 2.31 LINK OD1 ASP A 30 CA CA A 201 1555 1555 2.35 LINK OE1 GLU A 31 CA CA A 201 1555 5674 2.30 LINK OD1AASP A 33 CA CA A 201 1555 5674 2.46 LINK OD1BASP A 33 CA CA A 201 1555 5674 2.49 LINK OD2AASP A 33 CA CA A 201 1555 5674 2.49 LINK OD2BASP A 33 CA CA A 201 1555 5674 2.62 LINK OG1 THR A 35 MG MG A 202 1555 1555 2.08 LINK OE1 GLN A 99 NA NA A 204 1555 1555 2.29 LINK CA CA A 201 O HOH A 363 1555 5674 2.40 LINK CA CA A 201 O HOH A 381 1555 5674 2.36 LINK MG MG A 202 O3G GNP A 205 1555 1555 1.99 LINK MG MG A 202 O2B GNP A 205 1555 1555 2.00 LINK MG MG A 202 O HOH A 322 1555 1555 2.19 LINK MG MG A 202 O HOH A 323 1555 1555 2.08 LINK MG MG A 203 O HOH A 314 1555 1555 2.09 LINK MG MG A 203 O HOH A 314 1555 2665 2.09 LINK MG MG A 203 O HOH A 347 1555 1555 2.34 LINK MG MG A 203 O HOH A 347 1555 2665 2.34 SITE 1 AC1 6 PHE A 28 ASP A 30 GLU A 31 ASP A 33 SITE 2 AC1 6 HOH A 363 HOH A 381 SITE 1 AC2 5 SER A 17 THR A 35 GNP A 205 HOH A 322 SITE 2 AC2 5 HOH A 323 SITE 1 AC3 2 HOH A 314 HOH A 347 SITE 1 AC4 3 ARG A 68 GLN A 95 GLN A 99 SITE 1 AC5 29 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC5 29 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC5 29 VAL A 29 ASP A 30 GLU A 31 TYR A 32 SITE 4 AC5 29 PRO A 34 THR A 35 GLY A 60 ASN A 116 SITE 5 AC5 29 LYS A 117 ASP A 119 LEU A 120 SER A 145 SITE 6 AC5 29 ALA A 146 LYS A 147 MG A 202 HOH A 322 SITE 7 AC5 29 HOH A 323 HOH A 339 HOH A 366 HOH A 372 SITE 8 AC5 29 HOH A 403 CRYST1 89.959 89.959 136.766 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011116 0.006418 0.000000 0.00000 SCALE2 0.000000 0.012836 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007312 0.00000