HEADER ONCOPROTEIN, HYDROLASE 05-JUL-17 5WDQ TITLE H-RAS MUTANT L120A BOUND TO GMP-PNP AT 100K COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-RAS-1, HA-RAS, TRANSFORMING PROTEIN P21, C-H-RAS, P21RAS; COMPND 5 EC: 3.6.5.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SMALL G-PROTEIN, GTPASE, ONCOPROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.BANDARU,C.L.GEE,J.KURIYAN REVDAT 4 04-OCT-23 5WDQ 1 LINK REVDAT 3 20-NOV-19 5WDQ 1 REMARK REVDAT 2 13-SEP-17 5WDQ 1 REMARK REVDAT 1 19-JUL-17 5WDQ 0 JRNL AUTH P.BANDARU,N.H.SHAH,M.BHATTACHARYYA,J.P.BARTON,Y.KONDO, JRNL AUTH 2 J.C.COFSKY,C.L.GEE,A.K.CHAKRABORTY,T.KORTEMME,R.RANGANATHAN, JRNL AUTH 3 J.KURIYAN JRNL TITL DECONSTRUCTION OF THE RAS SWITCHING CYCLE THROUGH SATURATION JRNL TITL 2 MUTAGENESIS. JRNL REF ELIFE V. 6 2017 JRNL REFN ESSN 2050-084X JRNL PMID 28686159 JRNL DOI 10.7554/ELIFE.27810 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 54265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.150 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3963 - 3.3926 0.99 2694 179 0.1490 0.1480 REMARK 3 2 3.3926 - 2.6929 1.00 2659 135 0.1294 0.1435 REMARK 3 3 2.6929 - 2.3525 1.00 2636 146 0.1315 0.1338 REMARK 3 4 2.3525 - 2.1375 1.00 2644 113 0.1247 0.1369 REMARK 3 5 2.1375 - 1.9843 1.00 2611 129 0.1250 0.1612 REMARK 3 6 1.9843 - 1.8673 1.00 2617 129 0.1276 0.1493 REMARK 3 7 1.8673 - 1.7737 1.00 2577 160 0.1316 0.1491 REMARK 3 8 1.7737 - 1.6965 1.00 2624 115 0.1373 0.1369 REMARK 3 9 1.6965 - 1.6312 1.00 2581 155 0.1348 0.1443 REMARK 3 10 1.6312 - 1.5749 1.00 2597 131 0.1410 0.1569 REMARK 3 11 1.5749 - 1.5257 1.00 2594 139 0.1376 0.1599 REMARK 3 12 1.5257 - 1.4821 1.00 2589 141 0.1417 0.1390 REMARK 3 13 1.4821 - 1.4430 1.00 2589 127 0.1575 0.1478 REMARK 3 14 1.4430 - 1.4078 1.00 2599 135 0.1591 0.1824 REMARK 3 15 1.4078 - 1.3758 1.00 2536 141 0.1651 0.1602 REMARK 3 16 1.3758 - 1.3466 1.00 2610 126 0.1630 0.1924 REMARK 3 17 1.3466 - 1.3196 0.98 2516 159 0.1815 0.1733 REMARK 3 18 1.3196 - 1.2947 0.96 2472 128 0.1904 0.1822 REMARK 3 19 1.2947 - 1.2716 0.94 2429 120 0.1974 0.1912 REMARK 3 20 1.2716 - 1.2500 0.92 2360 123 0.2358 0.2604 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1653 REMARK 3 ANGLE : 1.089 2268 REMARK 3 CHIRALITY : 0.077 242 REMARK 3 PLANARITY : 0.007 309 REMARK 3 DIHEDRAL : 31.516 640 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WDQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000228598. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : PT-COATED SI MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54274 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 44.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 18.70 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.59400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 3K8Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG8000, 200 MM CALCIUM ACETATE, REMARK 280 100 MM MES/NAOH, PH 6.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 43.98000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.39186 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.36833 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 43.98000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 25.39186 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.36833 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 43.98000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 25.39186 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.36833 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 43.98000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 25.39186 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.36833 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 43.98000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 25.39186 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.36833 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 43.98000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 25.39186 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.36833 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 50.78373 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 88.73667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 50.78373 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 88.73667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 50.78373 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 88.73667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 50.78373 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 88.73667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 50.78373 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 88.73667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 50.78373 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 88.73667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 209 LIES ON A SPECIAL POSITION. REMARK 375 MG MG A 210 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 423 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 431 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 447 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 458 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 464 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 42 O HOH A 301 1.44 REMARK 500 H MET A 67 O HOH A 305 1.57 REMARK 500 OD1 ASP A 69 HE21 GLN A 99 1.59 REMARK 500 O HOH A 339 O HOH A 445 1.91 REMARK 500 NZ LYS A 42 O HOH A 301 1.99 REMARK 500 O HOH A 339 O HOH A 373 2.00 REMARK 500 O HOH A 312 O HOH A 460 2.04 REMARK 500 NE2 GLN A 95 O HOH A 302 2.09 REMARK 500 O HOH A 390 O HOH A 415 2.11 REMARK 500 O HOH A 394 O HOH A 425 2.11 REMARK 500 OG1 THR A 74 O HOH A 303 2.13 REMARK 500 OD1 ASP A 54 O HOH A 304 2.17 REMARK 500 OD1 ASP A 69 NE2 GLN A 99 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 334 O HOH A 393 16453 2.00 REMARK 500 O HOH A 393 O HOH A 393 16453 2.05 REMARK 500 O HOH A 459 O HOH A 459 5674 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 36 -81.11 -93.46 REMARK 500 ALA A 66 -79.55 -47.71 REMARK 500 ARG A 149 -8.79 82.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 82.4 REMARK 620 3 GNP A 201 O3G 171.2 88.9 REMARK 620 4 GNP A 201 O2B 90.5 172.9 98.2 REMARK 620 5 HOH A 321 O 86.9 90.3 91.7 89.6 REMARK 620 6 HOH A 340 O 89.5 89.4 91.9 90.2 176.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 82.4 REMARK 620 3 GNP A 201 O3G 171.2 88.9 REMARK 620 4 GNP A 201 O2B 90.5 172.9 98.2 REMARK 620 5 HOH A 321 O 86.9 90.3 91.7 89.7 REMARK 620 6 HOH A 340 O 89.5 89.4 91.9 90.2 176.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 28 O REMARK 620 2 ASP A 30 OD1 85.1 REMARK 620 3 GLU A 31 OE1 94.3 85.3 REMARK 620 4 ASP A 33 OD1 82.8 82.0 11.8 REMARK 620 5 ASP A 33 OD1 82.7 78.1 13.2 3.9 REMARK 620 6 ASP A 33 OD2 80.7 85.4 13.7 4.1 7.7 REMARK 620 7 ASP A 33 OD2 81.6 88.5 13.5 6.7 10.5 3.2 REMARK 620 8 HOH A 369 O 166.2 81.3 82.1 92.8 92.0 95.7 95.5 REMARK 620 9 HOH A 426 O 89.9 85.2 169.2 165.7 162.2 167.2 169.8 91.5 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 205 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 92 OD1 REMARK 620 2 HOH A 310 O 163.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 209 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 102 O REMARK 620 2 ARG A 102 O 16.2 REMARK 620 3 ARG A 102 O 0.0 16.2 REMARK 620 4 ARG A 102 O 16.2 0.0 16.2 REMARK 620 5 ASP A 105 OD1 100.9 85.6 100.9 85.6 REMARK 620 6 ASP A 105 OD2 97.3 83.9 97.3 83.9 52.9 REMARK 620 7 ASP A 105 OD1 100.9 85.6 100.9 85.6 0.0 52.9 REMARK 620 8 ASP A 105 OD2 97.3 83.9 97.3 83.9 52.9 0.0 52.9 REMARK 620 9 HOH A 431 O 89.8 93.8 89.8 93.8 85.3 138.1 85.3 138.1 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 208 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 138 O REMARK 620 2 GLN A 165 OE1 125.2 REMARK 620 3 HOH A 334 O 154.3 29.2 REMARK 620 4 HOH A 393 O 132.5 26.6 29.3 REMARK 620 5 HOH A 420 O 96.0 29.3 58.3 48.5 REMARK 620 6 HOH A 441 O 109.9 32.0 48.9 58.6 31.4 REMARK 620 7 HOH A 458 O 118.9 34.9 43.2 59.6 42.4 12.1 REMARK 620 8 HOH A 458 O 118.9 34.9 43.2 59.6 42.4 12.1 0.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 210 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 332 O REMARK 620 2 HOH A 332 O 97.6 REMARK 620 3 HOH A 335 O 84.5 172.8 REMARK 620 4 HOH A 335 O 88.9 84.5 88.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 210 DBREF 5WDQ A 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 5WDQ PHE A -3 UNP P01112 EXPRESSION TAG SEQADV 5WDQ GLN A -2 UNP P01112 EXPRESSION TAG SEQADV 5WDQ GLY A -1 UNP P01112 EXPRESSION TAG SEQADV 5WDQ HIS A 0 UNP P01112 EXPRESSION TAG SEQADV 5WDQ ALA A 120 UNP P01112 LEU 120 ENGINEERED MUTATION SEQRES 1 A 170 PHE GLN GLY HIS MET THR GLU TYR LYS LEU VAL VAL VAL SEQRES 2 A 170 GLY ALA GLY GLY VAL GLY LYS SER ALA LEU THR ILE GLN SEQRES 3 A 170 LEU ILE GLN ASN HIS PHE VAL ASP GLU TYR ASP PRO THR SEQRES 4 A 170 ILE GLU ASP SER TYR ARG LYS GLN VAL VAL ILE ASP GLY SEQRES 5 A 170 GLU THR CYS LEU LEU ASP ILE LEU ASP THR ALA GLY GLN SEQRES 6 A 170 GLU GLU TYR SER ALA MET ARG ASP GLN TYR MET ARG THR SEQRES 7 A 170 GLY GLU GLY PHE LEU CYS VAL PHE ALA ILE ASN ASN THR SEQRES 8 A 170 LYS SER PHE GLU ASP ILE HIS GLN TYR ARG GLU GLN ILE SEQRES 9 A 170 LYS ARG VAL LYS ASP SER ASP ASP VAL PRO MET VAL LEU SEQRES 10 A 170 VAL GLY ASN LYS CYS ASP ALA ALA ALA ARG THR VAL GLU SEQRES 11 A 170 SER ARG GLN ALA GLN ASP LEU ALA ARG SER TYR GLY ILE SEQRES 12 A 170 PRO TYR ILE GLU THR SER ALA LYS THR ARG GLN GLY VAL SEQRES 13 A 170 GLU ASP ALA PHE TYR THR LEU VAL ARG GLU ILE ARG GLN SEQRES 14 A 170 HIS HET GNP A 201 44 HET CA A 202 1 HET MG A 203 1 HET CA A 204 1 HET NA A 205 1 HET ACT A 206 7 HET ACT A 207 7 HET MG A 208 1 HET MG A 209 1 HET MG A 210 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM ACT ACETATE ION FORMUL 2 GNP C10 H17 N6 O13 P3 FORMUL 3 CA 2(CA 2+) FORMUL 4 MG 4(MG 2+) FORMUL 6 NA NA 1+ FORMUL 7 ACT 2(C2 H3 O2 1-) FORMUL 12 HOH *166(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 GLN A 61 SER A 65 5 5 HELIX 3 AA3 MET A 67 ARG A 73 1 7 HELIX 4 AA4 ASN A 86 ASP A 92 1 7 HELIX 5 AA5 ASP A 92 ASP A 105 1 14 HELIX 6 AA6 GLU A 126 GLY A 138 1 13 HELIX 7 AA7 GLY A 151 ARG A 164 1 14 SHEET 1 AA1 6 GLU A 37 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 THR A 58 -1 O ASP A 57 N ASP A 38 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N THR A 2 O LEU A 52 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 LINK OG SER A 17 CA A CA A 202 1555 1555 2.07 LINK OG SER A 17 MG B MG A 203 1555 1555 2.07 LINK O PHE A 28 CA CA A 204 1555 1555 2.30 LINK OD1 ASP A 30 CA CA A 204 1555 1555 2.34 LINK OE1 GLU A 31 CA CA A 204 1555 5674 2.37 LINK OD1AASP A 33 CA CA A 204 1555 5674 2.54 LINK OD1BASP A 33 CA CA A 204 1555 5674 2.41 LINK OD2AASP A 33 CA CA A 204 1555 5674 2.51 LINK OD2BASP A 33 CA CA A 204 1555 5674 2.50 LINK OG1 THR A 35 CA A CA A 202 1555 1555 2.07 LINK OG1 THR A 35 MG B MG A 203 1555 1555 2.07 LINK OD1 ASP A 92 NA NA A 205 1555 1555 2.19 LINK O AARG A 102 MG MG A 209 1555 1555 2.05 LINK O BARG A 102 MG MG A 209 1555 1555 2.35 LINK O AARG A 102 MG MG A 209 1555 6554 2.05 LINK O BARG A 102 MG MG A 209 1555 6554 2.35 LINK OD1AASP A 105 MG MG A 209 1555 1555 2.27 LINK OD2AASP A 105 MG MG A 209 1555 1555 2.62 LINK OD1AASP A 105 MG MG A 209 1555 6554 2.27 LINK OD2AASP A 105 MG MG A 209 1555 6554 2.62 LINK O GLY A 138 MG MG A 208 1555 16453 2.68 LINK OE1 GLN A 165 MG MG A 208 1555 1555 2.29 LINK O3G GNP A 201 CA A CA A 202 1555 1555 2.00 LINK O2B GNP A 201 CA A CA A 202 1555 1555 2.02 LINK O3G GNP A 201 MG B MG A 203 1555 1555 2.00 LINK O2B GNP A 201 MG B MG A 203 1555 1555 2.02 LINK CA A CA A 202 O HOH A 321 1555 1555 2.07 LINK CA A CA A 202 O HOH A 340 1555 1555 2.06 LINK MG B MG A 203 O HOH A 321 1555 1555 2.07 LINK MG B MG A 203 O HOH A 340 1555 1555 2.06 LINK CA CA A 204 O HOH A 369 1555 5674 2.32 LINK CA CA A 204 O HOH A 426 1555 5674 2.40 LINK NA NA A 205 O HOH A 310 1555 1555 3.05 LINK MG MG A 208 O HOH A 334 1555 16453 1.81 LINK MG MG A 208 O HOH A 393 1555 1555 2.41 LINK MG MG A 208 O HOH A 420 1555 1555 2.40 LINK MG MG A 208 O HOH A 441 1555 1555 2.30 LINK MG MG A 208 O HOH A 458 1555 1555 2.16 LINK MG MG A 208 O HOH A 458 1555 16453 2.16 LINK MG MG A 209 O HOH A 431 1555 1555 2.19 LINK MG MG A 209 O HOH A 431 1555 6554 2.19 LINK MG MG A 210 O HOH A 332 1555 1555 2.01 LINK MG MG A 210 O HOH A 332 1555 2665 2.01 LINK MG MG A 210 O HOH A 335 1555 1555 2.16 LINK MG MG A 210 O HOH A 335 1555 2665 2.16 SITE 1 AC1 34 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC1 34 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC1 34 VAL A 29 ASP A 30 GLU A 31 TYR A 32 SITE 4 AC1 34 PRO A 34 THR A 35 GLY A 60 GLN A 61 SITE 5 AC1 34 ASN A 116 LYS A 117 ASP A 119 SER A 145 SITE 6 AC1 34 ALA A 146 LYS A 147 CA A 202 MG A 203 SITE 7 AC1 34 ACT A 206 HOH A 321 HOH A 340 HOH A 345 SITE 8 AC1 34 HOH A 389 HOH A 390 HOH A 403 HOH A 411 SITE 9 AC1 34 HOH A 415 HOH A 425 SITE 1 AC2 5 SER A 17 THR A 35 GNP A 201 HOH A 321 SITE 2 AC2 5 HOH A 340 SITE 1 AC3 5 SER A 17 THR A 35 GNP A 201 HOH A 321 SITE 2 AC3 5 HOH A 340 SITE 1 AC4 6 PHE A 28 ASP A 30 GLU A 31 ASP A 33 SITE 2 AC4 6 HOH A 369 HOH A 426 SITE 1 AC5 5 LYS A 88 GLU A 91 ASP A 92 GLN A 95 SITE 2 AC5 5 HOH A 310 SITE 1 AC6 8 ASN A 85 HIS A 94 ALA A 120 ALA A 121 SITE 2 AC6 8 GNP A 201 HOH A 314 HOH A 317 HOH A 383 SITE 1 AC7 3 ARG A 149 GLU A 153 TYR A 157 SITE 1 AC8 7 GLY A 138 GLN A 165 HOH A 334 HOH A 393 SITE 2 AC8 7 HOH A 420 HOH A 441 HOH A 458 SITE 1 AC9 3 ARG A 102 ASP A 105 HOH A 431 SITE 1 AD1 2 HOH A 332 HOH A 335 CRYST1 87.960 87.960 133.105 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011369 0.006564 0.000000 0.00000 SCALE2 0.000000 0.013128 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007513 0.00000