HEADER CYTOKINE 06-JUL-17 5WDZ TITLE STRUCTURE OF MONOMERIC INTERLEUKIN-8 (1-66) COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-8; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IL-8,C-X-C MOTIF CHEMOKINE 8,CHEMOKINE (C-X-C MOTIF) LIGAND COMPND 5 8,EMOCTAKIN,GRANULOCYTE CHEMOTACTIC PROTEIN 1,GCP-1,MONOCYTE-DERIVED COMPND 6 NEUTROPHIL CHEMOTACTIC FACTOR,MDNCF,MONOCYTE-DERIVED NEUTROPHIL- COMPND 7 ACTIVATING PEPTIDE,MONAP,NEUTROPHIL-ACTIVATING PROTEIN 1,NAP-1, COMPND 8 PROTEIN 3-10C,T-CELL CHEMOTACTIC FACTOR; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CXCL8, IL8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET32B KEYWDS INTERLEUKIN-8, CHEMOKINE-FOLD, CYTOKINE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.BERKAMP,S.J.OPELLA,F.M.MARASSI REVDAT 5 14-JUN-23 5WDZ 1 SSBOND REVDAT 4 11-DEC-19 5WDZ 1 REMARK REVDAT 3 13-DEC-17 5WDZ 1 JRNL REVDAT 2 06-DEC-17 5WDZ 1 REMARK REVDAT 1 29-NOV-17 5WDZ 0 JRNL AUTH S.BERKAMP,S.H.PARK,A.A.DE ANGELIS,F.M.MARASSI,S.J.OPELLA JRNL TITL STRUCTURE OF MONOMERIC INTERLEUKIN-8 AND ITS INTERACTIONS JRNL TITL 2 WITH THE N-TERMINAL BINDING SITE-I OF CXCR1 BY SOLUTION NMR JRNL TITL 3 SPECTROSCOPY. JRNL REF J. BIOMOL. NMR V. 69 111 2017 JRNL REFN ISSN 1573-5001 JRNL PMID 29143165 JRNL DOI 10.1007/S10858-017-0128-3 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.H.PARK,S.BERKAMP,J.RADOICIC,A.A.DE ANGELIS,S.J.OPELLA REMARK 1 TITL INTERACTION OF MONOMERIC INTERLEUKIN-8 WITH CXCR1 MAPPED BY REMARK 1 TITL 2 PROTON-DETECTED FAST MAS SOLID-STATE NMR AND INTERMOLECULAR REMARK 1 TITL 3 PARAMAGNETIC RELAXATION ENHANCEMENT REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.41.1 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIMULATED ANNEALING WITH EEFX IMPLICIT REMARK 3 SOLVATION. REMARK 4 REMARK 4 5WDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000228703. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 7.3 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 20 MM [U-13C; U-15N] IL-8 1-66, REMARK 210 20 MM HEPES, 90% H2O/10% D2O; 20 REMARK 210 MM [U-15N] IL-8 1-66, 20 MM REMARK 210 HEPES, 90% H2O/10% D2O; 20 MM [U- REMARK 210 15N] IL-8, 20 MM HEPES, 70 MM REMARK 210 SODIUM CHLORIDE, 13.5 MG/L Y21M REMARK 210 BACTERIOPHAGE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D HNCACB; 3D HNCO; 3D REMARK 210 HCC(CO)NH; 3D CC(CO)NH; 2D IPAP; REMARK 210 3D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; VS REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, X-PLOR NIH 2.41.1 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 6 PRO A 16 71.70 -69.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30316 RELATED DB: BMRB REMARK 900 STRUCTURE OF MONOMERIC INTERLEUKIN-8 (1-66) DBREF 5WDZ A 1 66 UNP P10145 IL8_HUMAN 28 93 SEQRES 1 A 66 SER ALA LYS GLU LEU ARG CYS GLN CYS ILE LYS THR TYR SEQRES 2 A 66 SER LYS PRO PHE HIS PRO LYS PHE ILE LYS GLU LEU ARG SEQRES 3 A 66 VAL ILE GLU SER GLY PRO HIS CYS ALA ASN THR GLU ILE SEQRES 4 A 66 ILE VAL LYS LEU SER ASP GLY ARG GLU LEU CYS LEU ASP SEQRES 5 A 66 PRO LYS GLU ASN TRP VAL GLN ARG VAL VAL GLU LYS PHE SEQRES 6 A 66 LEU HELIX 1 AA1 GLU A 55 LEU A 66 1 12 SHEET 1 AA1 3 ILE A 22 ILE A 28 0 SHEET 2 AA1 3 GLU A 38 LEU A 43 -1 O LYS A 42 N GLU A 24 SHEET 3 AA1 3 GLU A 48 LEU A 51 -1 O LEU A 51 N ILE A 39 SSBOND 1 CYS A 7 CYS A 34 1555 1555 2.03 SSBOND 2 CYS A 9 CYS A 50 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1