HEADER HYDROLASE/HYDROLASE INHIBITOR 07-JUL-17 5WE9 TITLE CRYSTAL STRUCTURE OF THE INFLUENZA VIRUS PA ENDONUCLEASE IN COMPLEX TITLE 2 WITH INHIBITOR 7B (SRI-29731) COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 641501; SOURCE 4 STRAIN: SWL A/CALIFORNIA/04/2009 H1N1; SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET52B KEYWDS VIRUS, NUCLEASE, TRANSCRIPTION, CAP-SNATCHING, HYDROLASE, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.KUMAR,S.W.WHITE REVDAT 3 13-MAR-24 5WE9 1 LINK REVDAT 2 11-DEC-19 5WE9 1 REMARK REVDAT 1 27-DEC-17 5WE9 0 JRNL AUTH D.BEYLKIN,G.KUMAR,W.ZHOU,J.PARK,T.JEEVAN,C.LAGISETTI, JRNL AUTH 2 R.HARFOOT,R.J.WEBBY,S.W.WHITE,T.R.WEBB JRNL TITL PROTEIN-STRUCTURE ASSISTED OPTIMIZATION OF JRNL TITL 2 4,5-DIHYDROXYPYRIMIDINE-6-CARBOXAMIDE INHIBITORS OF JRNL TITL 3 INFLUENZA VIRUS ENDONUCLEASE. JRNL REF SCI REP V. 7 17139 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 29215062 JRNL DOI 10.1038/S41598-017-17419-6 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 18640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 917 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.5810 - 3.4496 1.00 2884 165 0.1799 0.1842 REMARK 3 2 3.4496 - 2.7384 1.00 2724 128 0.1915 0.2554 REMARK 3 3 2.7384 - 2.3923 1.00 2661 157 0.1935 0.2685 REMARK 3 4 2.3923 - 2.1736 1.00 2636 140 0.1865 0.2435 REMARK 3 5 2.1736 - 2.0178 1.00 2654 125 0.1872 0.2222 REMARK 3 6 2.0178 - 1.8989 0.95 2481 126 0.2042 0.2339 REMARK 3 7 1.8989 - 1.8038 0.64 1683 76 0.2405 0.2957 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1552 REMARK 3 ANGLE : 0.914 2091 REMARK 3 CHIRALITY : 0.056 216 REMARK 3 PLANARITY : 0.006 267 REMARK 3 DIHEDRAL : 5.152 955 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 1:178 OR RESID 477:477 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.425 75.618 14.074 REMARK 3 T TENSOR REMARK 3 T11: 0.2375 T22: 0.0470 REMARK 3 T33: 0.2071 T12: 0.0173 REMARK 3 T13: 0.1065 T23: -0.0817 REMARK 3 L TENSOR REMARK 3 L11: 2.1207 L22: 3.0081 REMARK 3 L33: 2.5165 L12: -0.1380 REMARK 3 L13: 0.0953 L23: 0.8169 REMARK 3 S TENSOR REMARK 3 S11: -0.1001 S12: 0.1097 S13: -0.4800 REMARK 3 S21: -0.1138 S22: -0.1192 S23: -0.1298 REMARK 3 S31: 0.4554 S32: 0.1217 S33: 0.1105 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WE9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000228882. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19618 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 17.70 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.90500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 30% PEG 4000, 0.2 M REMARK 280 MGCL2, 2 MM MNCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.56467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.12933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.56467 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.12933 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.56467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 85.12933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 42.56467 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 85.12933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -111.12150 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 64.15603 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 42.56467 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 198 REMARK 465 ALA A 199 REMARK 465 GLU A 200 REMARK 465 LEU A 201 REMARK 465 ALA A 202 REMARK 465 LEU A 203 REMARK 465 VAL A 204 REMARK 465 PRO A 205 REMARK 465 ARG A 206 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 SER A 140 OG REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 GLU A 166 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 436 O HOH A 512 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 125 -120.61 -95.13 REMARK 500 LYS A 139 46.51 31.51 REMARK 500 GLU A 141 -45.36 64.73 REMARK 500 THR A 162 -58.09 66.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 526 DISTANCE = 6.38 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 94.5 REMARK 620 3 GLU A 119 OE2 176.9 88.5 REMARK 620 4 ILE A 120 O 93.2 88.7 87.3 REMARK 620 5 GY7 A 303 O4 91.9 172.6 85.0 94.7 REMARK 620 6 GY7 A 303 O4 82.7 177.1 94.3 92.3 9.7 REMARK 620 7 GY7 A 303 O3 87.7 100.9 91.3 170.3 75.6 78.2 REMARK 620 8 GY7 A 303 O3 86.9 103.3 91.9 168.0 73.3 75.8 2.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 89.1 REMARK 620 3 GY7 A 303 O3 98.5 94.2 REMARK 620 4 GY7 A 303 O3 97.6 93.9 1.0 REMARK 620 5 GY7 A 303 O2 89.0 178.0 86.8 87.0 REMARK 620 6 GY7 A 303 O2 85.9 173.9 83.1 83.3 5.2 REMARK 620 7 HOH A 407 O 173.6 86.9 86.8 87.7 94.9 98.4 REMARK 620 8 HOH A 458 O 87.6 91.6 171.6 172.5 87.6 91.7 87.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GY7 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5W3I RELATED DB: PDB REMARK 900 RELATED ID: 5W44 RELATED DB: PDB REMARK 900 RELATED ID: 5W73 RELATED DB: PDB REMARK 900 RELATED ID: 5W7U RELATED DB: PDB REMARK 900 RELATED ID: 5W92 RELATED DB: PDB REMARK 900 RELATED ID: 5W9G RELATED DB: PDB REMARK 900 RELATED ID: 5WA6 RELATED DB: PDB REMARK 900 RELATED ID: 5WA7 RELATED DB: PDB REMARK 900 RELATED ID: 5WAP RELATED DB: PDB REMARK 900 RELATED ID: 5WB3 RELATED DB: PDB REMARK 900 RELATED ID: 5WDW RELATED DB: PDB REMARK 900 RELATED ID: 5WCS RELATED DB: PDB REMARK 900 RELATED ID: 5WCT RELATED DB: PDB REMARK 900 RELATED ID: 5WDN RELATED DB: PDB REMARK 900 RELATED ID: 5WE7 RELATED DB: PDB REMARK 900 RELATED ID: 5WDC RELATED DB: PDB DBREF 5WE9 A 1 50 UNP C3W5S0 C3W5S0_I09A0 1 50 DBREF 5WE9 A 73 196 UNP C3W5S0 C3W5S0_I09A0 73 196 SEQADV 5WE9 GLY A 51 UNP C3W5S0 LINKER SEQADV 5WE9 GLY A 52 UNP C3W5S0 LINKER SEQADV 5WE9 SER A 53 UNP C3W5S0 LINKER SEQADV 5WE9 ALA A 197 UNP C3W5S0 EXPRESSION TAG SEQADV 5WE9 ALA A 198 UNP C3W5S0 EXPRESSION TAG SEQADV 5WE9 ALA A 199 UNP C3W5S0 EXPRESSION TAG SEQADV 5WE9 GLU A 200 UNP C3W5S0 EXPRESSION TAG SEQADV 5WE9 LEU A 201 UNP C3W5S0 EXPRESSION TAG SEQADV 5WE9 ALA A 202 UNP C3W5S0 EXPRESSION TAG SEQADV 5WE9 LEU A 203 UNP C3W5S0 EXPRESSION TAG SEQADV 5WE9 VAL A 204 UNP C3W5S0 EXPRESSION TAG SEQADV 5WE9 PRO A 205 UNP C3W5S0 EXPRESSION TAG SEQADV 5WE9 ARG A 206 UNP C3W5S0 EXPRESSION TAG SEQRES 1 A 187 MET GLU ASP PHE VAL ARG GLN CYS PHE ASN PRO MET ILE SEQRES 2 A 187 VAL GLU LEU ALA GLU LYS ALA MET LYS GLU TYR GLY GLU SEQRES 3 A 187 ASP PRO LYS ILE GLU THR ASN LYS PHE ALA ALA ILE CYS SEQRES 4 A 187 THR HIS LEU GLU VAL CYS PHE MET TYR SER ASP GLY GLY SEQRES 5 A 187 SER LYS HIS ARG PHE GLU ILE ILE GLU GLY ARG ASP ARG SEQRES 6 A 187 ILE MET ALA TRP THR VAL VAL ASN SER ILE CYS ASN THR SEQRES 7 A 187 THR GLY VAL GLU LYS PRO LYS PHE LEU PRO ASP LEU TYR SEQRES 8 A 187 ASP TYR LYS GLU ASN ARG PHE ILE GLU ILE GLY VAL THR SEQRES 9 A 187 ARG ARG GLU VAL HIS ILE TYR TYR LEU GLU LYS ALA ASN SEQRES 10 A 187 LYS ILE LYS SER GLU LYS THR HIS ILE HIS ILE PHE SER SEQRES 11 A 187 PHE THR GLY GLU GLU MET ALA THR LYS ALA ASP TYR THR SEQRES 12 A 187 LEU ASP GLU GLU SER ARG ALA ARG ILE LYS THR ARG LEU SEQRES 13 A 187 PHE THR ILE ARG GLN GLU MET ALA SER ARG SER LEU TRP SEQRES 14 A 187 ASP SER PHE ARG GLN SER GLU ARG ALA ALA ALA GLU LEU SEQRES 15 A 187 ALA LEU VAL PRO ARG HET MN A 301 1 HET MG A 302 1 HET GY7 A 303 68 HET EDO A 304 4 HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETNAM GY7 2-[(2S)-1-(2,6-DIFLUOROBENZENE-1-CARBONYL)PYRROLIDIN-2- HETNAM 2 GY7 YL]-5-HYDROXY-6-OXO-N-(2-PHENYLETHYL)-1,6- HETNAM 3 GY7 DIHYDROPYRIMIDINE-4-CARBOXAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN GY7 SRI-29731 HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MN MN 2+ FORMUL 3 MG MG 2+ FORMUL 4 GY7 C24 H22 F2 N4 O4 FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *126(H2 O) HELIX 1 AA1 MET A 1 PHE A 9 1 9 HELIX 2 AA2 ASN A 10 GLU A 23 1 14 HELIX 3 AA3 GLU A 31 ASP A 50 1 20 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O HIS A 144 N GLU A 119 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 301 1555 1555 2.44 LINK OE1 GLU A 80 MG MG A 302 1555 1555 2.07 LINK OD2 ASP A 108 MN MN A 301 1555 1555 2.16 LINK OD1 ASP A 108 MG MG A 302 1555 1555 2.11 LINK OE2 GLU A 119 MN MN A 301 1555 1555 2.23 LINK O ILE A 120 MN MN A 301 1555 1555 2.17 LINK MN MN A 301 O4 AGY7 A 303 1555 1555 2.06 LINK MN MN A 301 O4 BGY7 A 303 1555 1555 2.16 LINK MN MN A 301 O3 AGY7 A 303 1555 1555 2.27 LINK MN MN A 301 O3 BGY7 A 303 1555 1555 2.21 LINK MG MG A 302 O3 AGY7 A 303 1555 1555 1.98 LINK MG MG A 302 O3 BGY7 A 303 1555 1555 2.09 LINK MG MG A 302 O2 AGY7 A 303 1555 1555 2.03 LINK MG MG A 302 O2 BGY7 A 303 1555 1555 1.97 LINK MG MG A 302 O HOH A 407 1555 1555 2.10 LINK MG MG A 302 O HOH A 458 1555 1555 2.19 SITE 1 AC1 6 HIS A 41 ASP A 108 GLU A 119 ILE A 120 SITE 2 AC1 6 MG A 302 GY7 A 303 SITE 1 AC2 6 GLU A 80 ASP A 108 MN A 301 GY7 A 303 SITE 2 AC2 6 HOH A 407 HOH A 458 SITE 1 AC3 20 ALA A 20 TYR A 24 GLU A 26 LYS A 34 SITE 2 AC3 20 ILE A 38 HIS A 41 GLU A 80 ASP A 108 SITE 3 AC3 20 GLU A 119 ILE A 120 LYS A 134 LYS A 137 SITE 4 AC3 20 MN A 301 MG A 302 HOH A 407 HOH A 415 SITE 5 AC3 20 HOH A 416 HOH A 439 HOH A 458 HOH A 500 SITE 1 AC4 7 PRO A 103 PHE A 105 LEU A 106 PRO A 107 SITE 2 AC4 7 GLU A 119 ILE A 138 THR A 143 CRYST1 74.081 74.081 127.694 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013499 0.007793 0.000000 0.00000 SCALE2 0.000000 0.015587 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007831 0.00000