HEADER HYDROLASE/HYDROLASE INHIBITOR 10-JUL-17 5WEI TITLE CRYSTAL STRUCTURE OF THE INFLUENZA VIRUS PA ENDONUCLEASE (E119D TITLE 2 MUTANT) IN COMPLEX WITH INHIBITOR 7A (SRI-29770) COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 641501; SOURCE 4 STRAIN: SWL A/CALIFORNIA/04/2009 H1N1; SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS VIRUS, NUCLEASE, TRANSCRIPTION, CAP-SNATCHING, HYDROLASE, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.KUMAR,S.W.WHITE REVDAT 3 13-MAR-24 5WEI 1 LINK REVDAT 2 11-DEC-19 5WEI 1 REMARK REVDAT 1 27-DEC-17 5WEI 0 JRNL AUTH D.BEYLKIN,G.KUMAR,W.ZHOU,J.PARK,T.JEEVAN,C.LAGISETTI, JRNL AUTH 2 R.HARFOOT,R.J.WEBBY,S.W.WHITE,T.R.WEBB JRNL TITL PROTEIN-STRUCTURE ASSISTED OPTIMIZATION OF JRNL TITL 2 4,5-DIHYDROXYPYRIMIDINE-6-CARBOXAMIDE INHIBITORS OF JRNL TITL 3 INFLUENZA VIRUS ENDONUCLEASE. JRNL REF SCI REP V. 7 17139 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 29215062 JRNL DOI 10.1038/S41598-017-17419-6 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 13203 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 644 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3387 - 3.8442 1.00 2627 156 0.1752 0.2063 REMARK 3 2 3.8442 - 3.0517 1.00 2523 139 0.2033 0.2032 REMARK 3 3 3.0517 - 2.6660 1.00 2483 139 0.2287 0.2843 REMARK 3 4 2.6660 - 2.4223 1.00 2485 106 0.2455 0.2998 REMARK 3 5 2.4223 - 2.2487 0.98 2441 104 0.2597 0.3020 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1477 REMARK 3 ANGLE : 0.591 2000 REMARK 3 CHIRALITY : 0.043 213 REMARK 3 PLANARITY : 0.004 258 REMARK 3 DIHEDRAL : 3.784 874 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 126.9533 199.5557 285.3588 REMARK 3 T TENSOR REMARK 3 T11: 0.7562 T22: 0.4103 REMARK 3 T33: 0.5266 T12: -0.1285 REMARK 3 T13: 0.2303 T23: 0.0662 REMARK 3 L TENSOR REMARK 3 L11: 4.3542 L22: 1.4489 REMARK 3 L33: 3.4419 L12: -0.2947 REMARK 3 L13: 1.4173 L23: 0.0151 REMARK 3 S TENSOR REMARK 3 S11: 0.1483 S12: -0.2236 S13: -0.2983 REMARK 3 S21: 0.2309 S22: -0.2693 S23: 0.1210 REMARK 3 S31: 0.8101 S32: -0.1766 S33: 0.1002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WEI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000228903. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13223 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.77400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M AMMONIUM SULFATE, CAPSO PH 9.5, REMARK 280 50 MM MNCL2, 50 MM MGCL2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.73700 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.73700 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.83100 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.73700 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.73700 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.83100 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.73700 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.73700 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.83100 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.73700 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.73700 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.83100 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.73700 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.73700 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.83100 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.73700 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.73700 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.83100 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.73700 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.73700 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.83100 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.73700 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.73700 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.83100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A -3 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 LYS A 19 CG CD CE NZ REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 ARG A 84 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 ILE A 129 CG1 CG2 CD1 REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 LYS A 137 CG CD CE NZ REMARK 470 ILE A 138 CG1 CG2 CD1 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 139 -1.42 57.49 REMARK 500 THR A 162 -66.23 67.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GY6 A 206 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD1 85.0 REMARK 620 3 ASP A 119 OD1 172.7 89.4 REMARK 620 4 ILE A 120 O 90.3 90.4 85.0 REMARK 620 5 GY6 A 206 O05 87.7 106.5 98.4 162.7 REMARK 620 6 GY6 A 206 O08 85.3 169.9 100.1 86.9 75.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD2 101.8 REMARK 620 3 GY6 A 206 O12 99.6 155.7 REMARK 620 4 GY6 A 206 O05 140.4 94.6 75.6 REMARK 620 5 HOH A 302 O 152.9 70.9 84.8 66.7 REMARK 620 6 HOH A 304 O 73.6 91.0 84.3 142.4 80.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GY6 A 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5W3I RELATED DB: PDB REMARK 900 RELATED ID: 5W44 RELATED DB: PDB REMARK 900 RELATED ID: 5WEF RELATED DB: PDB REMARK 900 RELATED ID: 5WE9 RELATED DB: PDB REMARK 900 RELATED ID: 5W73 RELATED DB: PDB REMARK 900 RELATED ID: 5W7U RELATED DB: PDB REMARK 900 RELATED ID: 5W92 RELATED DB: PDB REMARK 900 RELATED ID: 5W9G RELATED DB: PDB REMARK 900 RELATED ID: 5WA6 RELATED DB: PDB REMARK 900 RELATED ID: 5WA7 RELATED DB: PDB REMARK 900 RELATED ID: 5WEB RELATED DB: PDB REMARK 900 RELATED ID: 5WAP RELATED DB: PDB REMARK 900 RELATED ID: 5WB3 RELATED DB: PDB REMARK 900 RELATED ID: 5WDW RELATED DB: PDB REMARK 900 RELATED ID: 5WCS RELATED DB: PDB REMARK 900 RELATED ID: 5WCT RELATED DB: PDB REMARK 900 RELATED ID: 5WDN RELATED DB: PDB REMARK 900 RELATED ID: 5WE7 RELATED DB: PDB REMARK 900 RELATED ID: 5WDC RELATED DB: PDB DBREF 5WEI A 1 50 UNP C3W5S0 C3W5S0_I09A0 1 50 DBREF 5WEI A 73 196 UNP C3W5S0 C3W5S0_I09A0 73 196 SEQADV 5WEI MET A -19 UNP C3W5S0 INITIATING METHIONINE SEQADV 5WEI GLY A -18 UNP C3W5S0 EXPRESSION TAG SEQADV 5WEI SER A -17 UNP C3W5S0 EXPRESSION TAG SEQADV 5WEI SER A -16 UNP C3W5S0 EXPRESSION TAG SEQADV 5WEI HIS A -15 UNP C3W5S0 EXPRESSION TAG SEQADV 5WEI HIS A -14 UNP C3W5S0 EXPRESSION TAG SEQADV 5WEI HIS A -13 UNP C3W5S0 EXPRESSION TAG SEQADV 5WEI HIS A -12 UNP C3W5S0 EXPRESSION TAG SEQADV 5WEI HIS A -11 UNP C3W5S0 EXPRESSION TAG SEQADV 5WEI HIS A -10 UNP C3W5S0 EXPRESSION TAG SEQADV 5WEI SER A -9 UNP C3W5S0 EXPRESSION TAG SEQADV 5WEI SER A -8 UNP C3W5S0 EXPRESSION TAG SEQADV 5WEI GLY A -7 UNP C3W5S0 EXPRESSION TAG SEQADV 5WEI LEU A -6 UNP C3W5S0 EXPRESSION TAG SEQADV 5WEI VAL A -5 UNP C3W5S0 EXPRESSION TAG SEQADV 5WEI PRO A -4 UNP C3W5S0 EXPRESSION TAG SEQADV 5WEI ARG A -3 UNP C3W5S0 EXPRESSION TAG SEQADV 5WEI GLY A -2 UNP C3W5S0 EXPRESSION TAG SEQADV 5WEI SER A -1 UNP C3W5S0 EXPRESSION TAG SEQADV 5WEI HIS A 0 UNP C3W5S0 EXPRESSION TAG SEQADV 5WEI GLY A 51 UNP C3W5S0 LINKER SEQADV 5WEI GLY A 52 UNP C3W5S0 LINKER SEQADV 5WEI SER A 53 UNP C3W5S0 LINKER SEQADV 5WEI ASP A 119 UNP C3W5S0 GLU 119 ENGINEERED MUTATION SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA ILE CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE ASP ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET MN A 201 1 HET MN A 202 1 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HET GY6 A 206 21 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM GY6 2-[(2S)-1-(2,6-DICHLOROBENZENE-1-CARBONYL)PYRROLIDIN-2- HETNAM 2 GY6 YL]-5-HYDROXY-6-OXO-N-(2-PHENYLETHYL)-1,6- HETNAM 3 GY6 DIHYDROPYRIMIDINE-4-CARBOXAMIDE FORMUL 2 MN 2(MN 2+) FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 GY6 C24 H22 CL2 N4 O4 FORMUL 8 HOH *16(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 ASP A 50 1 20 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLU A 195 1 9 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O HIS A 144 N PHE A 117 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 201 1555 1555 2.32 LINK OE1 GLU A 80 MN MN A 202 1555 1555 2.37 LINK OD1 ASP A 108 MN MN A 201 1555 1555 2.18 LINK OD2 ASP A 108 MN MN A 202 1555 1555 2.04 LINK OD1 ASP A 119 MN MN A 201 1555 1555 2.43 LINK O ILE A 120 MN MN A 201 1555 1555 2.20 LINK MN MN A 201 O05 GY6 A 206 1555 1555 2.18 LINK MN MN A 201 O08 GY6 A 206 1555 1555 2.20 LINK MN MN A 202 O12 GY6 A 206 1555 1555 2.12 LINK MN MN A 202 O05 GY6 A 206 1555 1555 2.27 LINK MN MN A 202 O HOH A 302 1555 1555 2.80 LINK MN MN A 202 O HOH A 304 1555 1555 2.66 SITE 1 AC1 5 HIS A 41 ASP A 108 ASP A 119 ILE A 120 SITE 2 AC1 5 GY6 A 206 SITE 1 AC2 6 HIS A 41 GLU A 80 ASP A 108 GY6 A 206 SITE 2 AC2 6 HOH A 302 HOH A 304 SITE 1 AC3 4 GLU A 31 THR A 32 ASN A 33 LYS A 34 SITE 1 AC4 4 GLY A 52 SER A 53 ARG A 75 LYS A 113 SITE 1 AC5 3 ARG A 82 ASP A 83 MET A 86 SITE 1 AC6 11 TYR A 24 LYS A 34 HIS A 41 GLU A 80 SITE 2 AC6 11 ASP A 108 ASP A 119 ILE A 120 MN A 201 SITE 3 AC6 11 MN A 202 HOH A 302 HOH A 309 CRYST1 89.474 89.474 133.662 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011176 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011176 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007482 0.00000