HEADER STRUCTURAL PROTEIN 12-JUL-17 5WFT TITLE PELB 319-436 FROM PSEUDOMONAS AERUGINOSA PAO1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PELB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 319-436; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 6 / 1C / PRS 101 / PAO1; SOURCE 7 GENE: PELB, PA3063; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TETRATRICOPEPTIDE REPEAT, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.S.MARMONT,P.L.HOWELL REVDAT 4 08-JAN-20 5WFT 1 REMARK REVDAT 3 13-DEC-17 5WFT 1 JRNL REVDAT 2 18-OCT-17 5WFT 1 JRNL REVDAT 1 04-OCT-17 5WFT 0 JRNL AUTH L.S.MARMONT,G.B.WHITFIELD,J.D.RICH,P.YIP,L.B.GIESBRECHT, JRNL AUTH 2 C.A.STREMICK,J.C.WHITNEY,M.R.PARSEK,J.J.HARRISON,P.L.HOWELL JRNL TITL PELA AND PELB PROTEINS FORM A MODIFICATION AND SECRETION JRNL TITL 2 COMPLEX ESSENTIAL FOR PEL POLYSACCHARIDE-DEPENDENT BIOFILM JRNL TITL 3 FORMATION IN PSEUDOMONAS AERUGINOSA. JRNL REF J. BIOL. CHEM. V. 292 19411 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28972168 JRNL DOI 10.1074/JBC.M117.812842 REMARK 2 REMARK 2 RESOLUTION. 2.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.890 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 6401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7813 - 4.8212 1.00 1262 140 0.2017 0.2700 REMARK 3 2 4.8212 - 3.8275 1.00 1150 128 0.1768 0.2112 REMARK 3 3 3.8275 - 3.3439 1.00 1132 126 0.2289 0.2943 REMARK 3 4 3.3439 - 3.0383 1.00 1109 123 0.2388 0.2697 REMARK 3 5 3.0383 - 2.8205 1.00 1108 123 0.2709 0.3490 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 968 REMARK 3 ANGLE : 1.094 1315 REMARK 3 CHIRALITY : 0.055 138 REMARK 3 PLANARITY : 0.007 173 REMARK 3 DIHEDRAL : 17.193 570 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 319 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4654 -18.5006-132.5917 REMARK 3 T TENSOR REMARK 3 T11: 0.1293 T22: 0.2108 REMARK 3 T33: 0.1455 T12: -0.0491 REMARK 3 T13: 0.0870 T23: 0.0403 REMARK 3 L TENSOR REMARK 3 L11: 2.1714 L22: 1.2500 REMARK 3 L33: 2.0119 L12: -0.1806 REMARK 3 L13: -0.4845 L23: -0.0153 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.0053 S13: -0.0921 REMARK 3 S21: 0.0684 S22: 0.0520 S23: 0.2242 REMARK 3 S31: 0.0919 S32: -0.2359 S33: -0.0319 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 351 THROUGH 387 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7635 -15.9934-121.5579 REMARK 3 T TENSOR REMARK 3 T11: 0.1914 T22: 0.2364 REMARK 3 T33: 0.1824 T12: -0.0051 REMARK 3 T13: 0.1439 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 2.4989 L22: 0.9450 REMARK 3 L33: 1.8902 L12: -0.1887 REMARK 3 L13: -0.6141 L23: 0.3160 REMARK 3 S TENSOR REMARK 3 S11: 0.1754 S12: -0.1368 S13: 0.3443 REMARK 3 S21: 0.0440 S22: -0.0019 S23: 0.0806 REMARK 3 S31: -0.2764 S32: -0.2270 S33: -0.1724 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 388 THROUGH 436 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1256 -19.5433-106.9990 REMARK 3 T TENSOR REMARK 3 T11: 0.1739 T22: 0.3264 REMARK 3 T33: 0.1899 T12: -0.1120 REMARK 3 T13: 0.0735 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 3.3777 L22: 1.1368 REMARK 3 L33: 3.0613 L12: 0.1899 REMARK 3 L13: -2.1197 L23: 0.2678 REMARK 3 S TENSOR REMARK 3 S11: 0.1600 S12: -0.3984 S13: -0.0168 REMARK 3 S21: 0.2323 S22: -0.1020 S23: 0.0259 REMARK 3 S31: -0.2040 S32: 0.1437 S33: -0.0632 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5WFT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-17. REMARK 100 THE DEPOSITION ID IS D_1000228955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10961 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.820 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 19.20 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: HEXAGONAL BIPYRAMID REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 HEPES PH 7.5, 13% (W/V) PEG 3350, REMARK 280 0.2 M PROLINE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 145.16667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.58333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.87500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.29167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 181.45833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 145.16667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 72.58333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 36.29167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 108.87500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 181.45833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 319 CG CD OE1 OE2 REMARK 470 ARG A 321 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 383 CG CD OE1 NE2 REMARK 470 GLU A 433 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 320 -111.64 -98.35 REMARK 500 ASP A 369 74.17 -101.17 REMARK 500 THR A 403 15.58 57.25 REMARK 500 REMARK 500 REMARK: NULL DBREF 5WFT A 319 436 UNP Q9HZE5 Q9HZE5_PSEAE 319 436 SEQRES 1 A 118 GLU ASP ARG THR LEU LEU ALA ASP LEU ALA ARG LEU GLY SEQRES 2 A 118 GLU TRP THR GLY ASN GLY PRO ARG ALA LEU GLY PHE TRP SEQRES 3 A 118 LYS GLN LEU LEU ALA GLY ALA ASP ASP PRO ALA LEU ARG SEQRES 4 A 118 GLU HIS ALA TRP ARG LEU SER LEU GLN MSE PHE ASP PHE SEQRES 5 A 118 ASP SER ALA ILE GLU LEU LEU ALA PRO ILE GLY ALA GLN SEQRES 6 A 118 ARG GLN MSE THR ASP GLU GLU LEU ASP ALA LEU VAL TYR SEQRES 7 A 118 SER HIS GLU THR ARG GLY THR PRO GLU GLU GLY GLU ALA SEQRES 8 A 118 TRP LEU ARG GLY TYR VAL GLN ARG TYR PRO LYS GLN ARG SEQRES 9 A 118 LEU ALA TRP GLN ARG LEU GLN GLN ILE LEU GLU HIS THR SEQRES 10 A 118 GLN MODRES 5WFT MSE A 367 MET MODIFIED RESIDUE MODRES 5WFT MSE A 386 MET MODIFIED RESIDUE HET MSE A 367 8 HET MSE A 386 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 2(C5 H11 N O2 SE) HELIX 1 AA1 THR A 322 LEU A 330 1 9 HELIX 2 AA2 ASN A 336 ALA A 351 1 16 HELIX 3 AA3 ASP A 353 MSE A 367 1 15 HELIX 4 AA4 ASP A 369 ALA A 378 1 10 HELIX 5 AA5 PRO A 379 ARG A 384 1 6 HELIX 6 AA6 THR A 387 ARG A 401 1 15 HELIX 7 AA7 THR A 403 VAL A 415 1 13 HELIX 8 AA8 GLN A 421 GLU A 433 1 13 LINK C GLN A 366 N MSE A 367 1555 1555 1.32 LINK C MSE A 367 N PHE A 368 1555 1555 1.34 LINK C GLN A 385 N MSE A 386 1555 1555 1.33 LINK C MSE A 386 N THR A 387 1555 1555 1.33 CRYST1 61.140 61.140 217.750 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016356 0.009443 0.000000 0.00000 SCALE2 0.000000 0.018886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004592 0.00000